BAC Information

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BAC

Clone NameB6Ng01-220K09
Chromosome15 (Build37)
Map Location 29,728,481 - 29,890,947
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K09.bB6Ng01-220K09.g
ACCGA036153GA036154
length1,0351,137
definitionB6Ng01-220K09.b B6Ng01-220K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,728,481 - 29,729,006)(29,889,807 - 29,890,947)
sequence
gaattcatcctttccatatgcatctttgcgggaagcgggtgcggccgcat
aggccaagatggcaccctggcccattgccaggccctgtgaaccgcacatg
ttaactgccttgcctgaacatgcacagtgaaactgcatgagtaagctgcc
tgccaagttagattattccttgtgatccggatctgtcagcctatctgtga
ccgacctgagctcatgcctgatttatctgtagtcggatgtcctgcttgag
tttgaggcacagtaggctgcctgaaccatcagccactccgttgactcccc
caccaccccccttataaagatgagggatacaaaaggggaaagcgtagtct
tcatgcaaaagtctggaaaaatgtgcccgccgttgccgggggccttccca
gtatttcaggatcaacaagggcaatggtatcatgaacccctggattggaa
ggttgtacaaagattgaaggagtcagttcgacttatggggaccaggctgc
ctttaccataactcaggttgagtccctacagtggtactgtatgacgcctt
ttgattggcagaacctctgcaaggctgttctttcaggaggaggttactta
acatggaagactgcttatattgagcatgtcgttgagcaggctgcagctaa
tgctgccgctggactccccaatgcatcctgggatatagacatgttaatgg
ggcaagggaattttgccaacaatcaaacaggttatcctatacaggtttat
gagcagattaataactgtgctcttagagcttggaaaatgctatcaggcac
tggagaccttggggccagcttgtctaaagtgatacaggaacccaatgaga
agtttacagacttcctagcatgactagtggagacagctgggagagtgttt
tcagatgttgatgctacaatgccattggtcaagcaattagcctatgagca
ggccaaaaaaccctgcagagatgccatacgcccttataaaaagcaaaccg
ctgatgtatgggctaaagtttgcctgagatgtggt

gaattccctcgacacatattgtccagtagattaaacttctctacctccta
acctttaacagaggccttttggggaaggagagtatttctgcttctctagg
ttccacaatcctggaggaattaaaaagtgtgaaatattcaaatggcaact
aggaggaggaggtaacaacaaagggcattactgatccacagaaaatcccc
aaataattaaagatgcaattgaatgaaaaactcaagttctaagcctgttt
tcaaatacactgcagttccaacagctggctgtggagaacaagattctatc
cttcagtgtctttatgcatcttgttcttttccaacctgttagtttgcatg
tattttggagagtgaatactaatactttcatttttaatagcatacagaat
ttttcatgtggtatgtataattaaacaaaatgttaaattgatgaatggat
aatgtatattaagtgactatacttcacttcataaataagggaatatttga
tgtgcatgaattgacattttgtattagcaggtgataagattcttttcaaa
tcttttactatttctctcaacaggaaatactgagttttccaggtgccaat
agaattatcatatcatcatccccaaaagatggagagccaagaacatgtga
gtttcaggacagcagggaccttggctctttagtattttctcagcaaaact
tgattaatgccttgtatgaaagaaataagctcaactaatatgatgaaagt
atataaatctaatttaaaatacagtataataagacacattagggagggag
aaatgcctcattctttctttaaaagaagccaggaaaaaacccaaaatcta
caaaggttgatgcattaggtaaggaataataaaatttggaacaataagtg
ttaaatcttcattccaaaacattgcatatatttgtaaagttccgtaatta
taaatacgacaaggtagactccctttctcccattcagagcttcttttctg
tttggtcatgccacagctgcttgtagaagaaccagatatctctagccgcc
cctccccctcctcattagatctcagatcttctaccagggacattccagct
gctgtaaggcatgccagaacctcaatgcacatcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29728481_29729006
seq2: B6Ng01-220K09.b_46_571

seq1  GAATTCATCCTTTCCATATGCATCTTTGCGGGAAGCGGGTGCGGCCGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTTCCATATGCATCTTTGCGGGAAGCGGGTGCGGCCGCAT  50

seq1  AGGCCAAGATGGCACCCTGGCCCATTGCCAGGCCCTGTGAACCGCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGATGGCACCCTGGCCCATTGCCAGGCCCTGTGAACCGCACATG  100

seq1  TTAACTGCCTTGCCTGAACATGCACAGTGAAACTGCATGAGTAAGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCCTTGCCTGAACATGCACAGTGAAACTGCATGAGTAAGCTGCC  150

seq1  TGCCAAGTTAGATTATTCCTTGTGATCCGGATCTGTCAGCCTATCTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTTAGATTATTCCTTGTGATCCGGATCTGTCAGCCTATCTGTGA  200

seq1  CCGACCTGAGCTCATGCCTGATTTATCTGTAGTCGGATGTCCTGCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTGAGCTCATGCCTGATTTATCTGTAGTCGGATGTCCTGCTTGAG  250

seq1  TTTGAGGCACAGTAGGCTGCCTGAACCATCAGCCACTCCGTTGACTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCACAGTAGGCTGCCTGAACCATCAGCCACTCCGTTGACTCCCC  300

seq1  CACCACCCCCCTTATAAAGATGAGGGATACAAAAGGGGAAAGCGTAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCCCTTATAAAGATGAGGGATACAAAAGGGGAAAGCGTAGTCT  350

seq1  TCATGCAAAAGTCTGGAAAAATGTGCCCGCCGTTGCCGGGGGCCTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAAAGTCTGGAAAAATGTGCCCGCCGTTGCCGGGGGCCTTCCCA  400

seq1  GTATTTCAGGATCAACAAGGGCAATGGTATCATGAACCCCTGGATTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAGGATCAACAAGGGCAATGGTATCATGAACCCCTGGATTGGAA  450

seq1  GGTTGTACAAAGATTGAAGGAGTCAGTTCGACTTATGGGGACCAGGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAAGATTGAAGGAGTCAGTTCGACTTATGGGGACCAGGCTGC  500

seq1  CTTTACCATAACTCAGGTTGAGTCCC  526
      ||||||||||||||||||||||||||
seq2  CTTTACCATAACTCAGGTTGAGTCCC  526


seq1: chr15_29889807_29890947
seq2: B6Ng01-220K09.g_65_1201 (reverse)

seq1  GACTGATGGTGCATTGCCGTGTCT-GCATGCCTTACAGGCAAGCTGGAAT  49
      ||||||| ||||||||  || ||| |||||||||||||   |||||||||
seq2  GACTGAT-GTGCATTGAGGT-TCTGGCATGCCTTACAG--CAGCTGGAAT  46

seq1  GT-CCTGGTAGGAGGAATCTGAGATCTTATGAG--AGGGGAGGGGCGGCT  96
      || |||||||| ||  ||||||||||| |||||   ||||||||||||||
seq2  GTCCCTGGTAGAAG--ATCTGAGATCTAATGAGGAGGGGGAGGGGCGGCT  94

seq1  AGGAGGATATCCTGGTCTCTGACAAGCAGCTGTGGCATGACCAAACAGAA  146
      ||   ||||||  | |||   |||||||||||||||||||||||||||||
seq2  AG--AGATATCTGGTTCTTCTACAAGCAGCTGTGGCATGACCAAACAGAA  142

seq1  AAGAAGCTCTGAATGGGAGAAAGGGAGTCTA-CTTGTCGTATTTAATAAT  195
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  AAGAAGCTCTGAATGGGAGAAAGGGAGTCTACCTTGTCGTATTT-ATAAT  191

seq1  TACGGAACTTTACAAATATATGCAATGTTTTGGAATGAAGATTTAACACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAACTTTACAAATATATGCAATGTTTTGGAATGAAGATTTAACACT  241

seq1  TATTGTTCCAAATTTTATTATTCCTTACCTAATGCATCAACCTTTGTAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCCAAATTTTATTATTCCTTACCTAATGCATCAACCTTTGTAGA  291

seq1  TTTTGGGTTTTTTCCTGGCTTCTTTTAAAGAAAGAATGAGGCATTTCTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTTTTCCTGGCTTCTTTTAAAGAAAGAATGAGGCATTTCTCC  341

seq1  CTCCCTAATGTGTCTTATTATACTGTATTTTAAATTAGATTTATATACTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAATGTGTCTTATTATACTGTATTTTAAATTAGATTTATATACTT  391

seq1  TCATCATATTAGTTGAGCTTATTTCTTTCATACAAGGCATTAATCAAGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATATTAGTTGAGCTTATTTCTTTCATACAAGGCATTAATCAAGTT  441

seq1  TTGCTGAGAAAATACTAAAGAGCCAAGGTCCCTGCTGTCCTGAAACTCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGAAAATACTAAAGAGCCAAGGTCCCTGCTGTCCTGAAACTCAC  491

seq1  ATGTTCTTGGCTCTCCATCTTTTGGGGATGATGATATGATAATTCTATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGGCTCTCCATCTTTTGGGGATGATGATATGATAATTCTATTG  541

seq1  GCACCTGGAAAACTCAGTATTTCCTGTTGAGAGAAATAGTAAAAGATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGAAAACTCAGTATTTCCTGTTGAGAGAAATAGTAAAAGATTTG  591

seq1  AAAAGAATCTTATCACCTGCTAATACAAAATGTCAATTCATGCACATCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCTTATCACCTGCTAATACAAAATGTCAATTCATGCACATCAA  641

seq1  ATATTCCCTTATTTATGAAGTGAAGTATAGTCACTTAATATACATTATCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTTATTTATGAAGTGAAGTATAGTCACTTAATATACATTATCC  691

seq1  ATTCATCAATTTAACATTTTGTTTAATTATACATACCACATGAAAAATTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAATTTAACATTTTGTTTAATTATACATACCACATGAAAAATTC  741

seq1  TGTATGCTATTAAAAATGAAAGTATTAGTATTCACTCTCCAAAATACATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTATTAAAAATGAAAGTATTAGTATTCACTCTCCAAAATACATG  791

seq1  CAAACTAACAGGTTGGAAAAGAACAAGATGCATAAAGACACTGAAGGATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAACAGGTTGGAAAAGAACAAGATGCATAAAGACACTGAAGGATA  841

seq1  GAATCTTGTTCTCCACAGCCAGCTGTTGGAACTGCAGTGTATTTGAAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGTTCTCCACAGCCAGCTGTTGGAACTGCAGTGTATTTGAAAAC  891

seq1  AGGCTTAGAACTTGAGTTTTTCATTCAATTGCATCTTTAATTATTTGGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGAACTTGAGTTTTTCATTCAATTGCATCTTTAATTATTTGGGG  941

seq1  ATTTTCTGTGGATCAGTAATGCCCTTTGTTGTTACCTCCTCCTCCTAGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTGGATCAGTAATGCCCTTTGTTGTTACCTCCTCCTCCTAGTT  991

seq1  GCCATTTGAATATTTCACACTTTTTAATTCCTCCAGGATTGTGGAACCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAATATTTCACACTTTTTAATTCCTCCAGGATTGTGGAACCTA  1041

seq1  GAGAAGCAGAAATACTCTCCTTCCCCAAAAGGCCTCTGTTAAAGGTTAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGAAATACTCTCCTTCCCCAAAAGGCCTCTGTTAAAGGTTAGG  1091

seq1  AGGTAGAGAAGTTTAATCTACTGGACAATATGTGTCGAGGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGAAGTTTAATCTACTGGACAATATGTGTCGAGGGAATTC  1137


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