BAC Information

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BAC

Clone NameB6Ng01-221F03
Chromosome15 (Build37)
Map Location 16,264,080 - 16,416,686
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221F03.bB6Ng01-221F03.g
ACCGA036645GA036646
length7041,034
definitionB6Ng01-221F03.b B6Ng01-221F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,416,145 - 16,416,686)(16,264,080 - 16,265,078)
sequence
gaattccttcccatgtttgatagtgttttcctgtatttctttaagaaatt
tacgtgtttcctctttaagggctcctacctgtttatttgtgttctcctgt
tttgtttgtttgtttgtttgttttttgtttttttgttctgttttttcgag
acagggtttctctgtatagccctggctgtcctggaactcactttgtagac
caggctggcctcgaactcagaaatccacctgcctctgcctcctgagtgtt
gggattaaaggtgtgtgccaccatacctggcttctcctgtattttttaag
agagctatggtatccaggtgtgttaaggtatccaggacttgctactgtgg
gagaattgggttctgatggtgccaagtggattctgttgcttatgttattg
tgcttgcctctcaccatcttgttattttgttttacctggccttgctatct
ctgacttgagtttgtacccactgtgatcctggttatgatggaccttgtag
gagtcaaactgtttctggatatgtacttgggaaggagaatgctggagcac
ctgatcttcccctggacacacttgtgaccaaataaatgatgtttctccag
cagggcagatagttcccacctccactgggccccggagtgttaggccaggt
ataaagcacctcctgggagtcaaagttgtatttgtgtgtgggtgtggagg
gggc

gaattctcagctcctccagtgccatgtctgcctggatgctgccatgcttc
tacctcgctgaaatagacagaacctctgaacctgtaagccagccacaatc
aaatgttttcctttataagagttgccttggtcatgatgtctgttcacaac
aatagaaacctaagaggcaaatattagtagcctttgttttgtaaaaaaat
ataaaatttagagatttaaaaaatggtagagattatagcttcatatatat
atatatatatatatatatatatatatatatatctcattatgtatttattc
atccatttatttaacagtgtgtatatgtgtacattttctgtgcagcacat
gtgtagatcaggtaacaagttgtcagagttggttttctccatccatgctg
atcatccccttgatggaacatagttcttcatacattgcagaaacaaccat
tactcacggaaccatctcgtccaacttgtagtaaatttcttagtattgtt
ttaccatttctcccatttattaaaaactatactcttttctcaagcaatat
gtcccgattaaggattcttctcccatttcctcctctcagttcctcccaat
tttccttcccatctggattctcatcatattctcatctgtctctcaacaga
aaagaatagtcttctaaggtataacactcaaacataacaaaatagaacac
aatgcattacattgaaggtgggaaaggaatcccacagaagtaaaagaacc
caaaagaagttctaagaatcagagatccactcattcatagactcaagagt
tctattattatccaaaattaaaactataacatatacacaaaggacctggt
gcagacccatgtaggccttcatatggggacaaaaggggtacagttggact
ctattccctcattatttggaaacttcgttaggattgccttcatatacttt
taaggcccccaatggaaggagctagagaaagtacccaagaagctgaagtg
tatgtaactctataggtgaaacaacattatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16416145_16416686
seq2: B6Ng01-221F03.b_206_748 (reverse)

seq1  GCCCCCTCCACACCCACACACAAATACAAC-TTGACTCCCAGGAGGTGCT  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCCCCTCCACACCCACACACAAATACAACTTTGACTCCCAGGAGGTGCT  50

seq1  TTATACCTGGCCTAACACTCCGGGGCCCAGTGGAGGTGGGAACTATCTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTGGCCTAACACTCCGGGGCCCAGTGGAGGTGGGAACTATCTGC  100

seq1  CCTGCTGGAGAAACATCATTTATTTGGTCACAAGTGTGTCCAGGGGAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGAGAAACATCATTTATTTGGTCACAAGTGTGTCCAGGGGAAGA  150

seq1  TCAGGTGCTCCAGCATTCTCCTTCCCAAGTACATATCCAGAAACAGTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTCCAGCATTCTCCTTCCCAAGTACATATCCAGAAACAGTTTG  200

seq1  ACTCCTACAAGGTCCATCATAACCAGGATCACAGTGGGTACAAACTCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACAAGGTCCATCATAACCAGGATCACAGTGGGTACAAACTCAAG  250

seq1  TCAGAGATAGCAAGGCCAGGTAAAACAAAATAACAAGATGGTGAGAGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATAGCAAGGCCAGGTAAAACAAAATAACAAGATGGTGAGAGGCA  300

seq1  AGCACAATAACATAAGCAACAGAATCCACTTGGCACCATCAGAACCCAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATAACATAAGCAACAGAATCCACTTGGCACCATCAGAACCCAAT  350

seq1  TCTCCCACAGTAGCAAGTCCTGGATACCTTAACACACCTGGATACCATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACAGTAGCAAGTCCTGGATACCTTAACACACCTGGATACCATAG  400

seq1  CTCTCTTAAAAAATACAGGAGAAGCCAGGTATGGTGGCACACACCTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAAAAATACAGGAGAAGCCAGGTATGGTGGCACACACCTTTAA  450

seq1  TCCCAACACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAG  500

seq1  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG  542
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG  543


seq1: chr15_16264080_16265078
seq2: B6Ng01-221F03.g_65_1062

seq1  GAATTCTCAGCTCCTCCAGTGCCATGTCTGCCTGGATGCTGCCATGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCCAGTGCCATGTCTGCCTGGATGCTGCCATGCTTC  50

seq1  TACCTCGCTGAAATAGACAGAACCTCTGAACCTGTAAGCCAGCCACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGCTGAAATAGACAGAACCTCTGAACCTGTAAGCCAGCCACAATC  100

seq1  AAATGTTTTCCTTTATAAGAGTTGCCTTGGTCATGATGTCTGTTCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCCTTTATAAGAGTTGCCTTGGTCATGATGTCTGTTCACAAC  150

seq1  AATAGAAACCTAAGAGGCAAATATTAGTAGCCTTTGTTTTGTAAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACCTAAGAGGCAAATATTAGTAGCCTTTGTTTTGTAAAAAAAT  200

seq1  ATAAAATTTAGAGATTTAAAAAATGGTAGAGATTATAGCTTCATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTAGAGATTTAAAAAATGGTAGAGATTATAGCTTCATATATAT  250

seq1  ATATATATATATATATATATATATATATATATCTCATTATGTATTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATCTCATTATGTATTTATTC  300

seq1  ATCCATTTATTTAACAGTGTGTATATGTGTACATTTTCTGTGCAGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTATTTAACAGTGTGTATATGTGTACATTTTCTGTGCAGCACAT  350

seq1  GTGTAGATCAGGTAACAAGTTGTCAGAGTTGGTTTTCTCCATCCATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATCAGGTAACAAGTTGTCAGAGTTGGTTTTCTCCATCCATGCTG  400

seq1  ATCATCCCCTTGATGGAACATAGTTCTTCATACATTGCAGAAACAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCCTTGATGGAACATAGTTCTTCATACATTGCAGAAACAACCAT  450

seq1  TACTCACGGAACCATCTCGTCCAACTTGTAGTAAATTTCTTAGTATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACGGAACCATCTCGTCCAACTTGTAGTAAATTTCTTAGTATTGTT  500

seq1  TTACCATTTCTCCCATTTATTAAAAACTATACTCTTTTCTCAAGCAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTTCTCCCATTTATTAAAAACTATACTCTTTTCTCAAGCAATAT  550

seq1  GTCCCGATTAAGGATTCTTCTCCCATTTCCTCCTCTCAGTTCCTCCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGATTAAGGATTCTTCTCCCATTTCCTCCTCTCAGTTCCTCCCAAT  600

seq1  TTTCCTTCCCATCTGGATTCTCATCATATTCTCATCTGTCTCTCAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCCATCTGGATTCTCATCATATTCTCATCTGTCTCTCAACAGA  650

seq1  AAAGAATAGTCTTCTAAGGTATAACACTCAAACATAACAAAATAGAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGTCTTCTAAGGTATAACACTCAAACATAACAAAATAGAACAC  700

seq1  AATGCATTACATTGAAGGTGGGAAAGGAATCCAACAGAAGTAAAAGAACC  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATGCATTACATTGAAGGTGGGAAAGGAATCCCACAGAAGTAAAAGAACC  750

seq1  CAAAAGAAGTTCTAAGAATCAGAGATCCACTCATTCATAGACTCAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGTTCTAAGAATCAGAGATCCACTCATTCATAGACTCAAGAGT  800

seq1  TCTATTATTATCCAAAATTAAAACTATAACATATACACAAAGGACCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTATCCAAAATTAAAACTATAACATATACACAAAGGACCTGGT  850

seq1  GCAGACCCATGTAGGCCTTCATATGGGGACAAAAGGGGTACAGTTTGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAGACCCATGTAGGCCTTCATATGGGGACAAAAGGGGTACAG-TTGGAC  899

seq1  TCTATTCCCTCATTATTTGGAAACTTCGTTAGGATTGCCTTCATATACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCCTCATTATTTGGAAACTTCGTTAGGATTGCCTTCATATACTT  949

seq1  TTAAGGGCCCCCAATGG-AGGAGCTAGAGAAAGTACCCAAGGAGCTGAAG  999
      |||| |||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TTAA-GGCCCCCAATGGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAG  998


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