BAC Information

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BAC

Clone NameB6Ng01-221N10
Chromosome15 (Build37)
Map Location 75,382,344 - 75,528,425
singlet/doubletdoublet
Overlap geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik
Downstream geneRhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221N10.bB6Ng01-221N10.g
ACCGA037018GA037019
length881686
definitionB6Ng01-221N10.b B6Ng01-221N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,527,552 - 75,528,425)(75,382,344 - 75,383,029)
sequence
gaattctgagttgggcaggaagtggcccttttctaagctgccatgtgaga
gcctaaaggtgtcccccctcctgcctcccccccccaacctcatgctaaga
gattagagactcctaagcctgtctggctcctcccacaaatggcagcctgt
cctttgggatgggttagtcttggggatgccactacagaaccaaacttaca
accgggaaaagatgggctggagagagcaatgtgaaaaaaaggagctgatt
ctaaaaatattatagcttggtctggattggttcgctttagtgattgctcc
tgcctcagtgggtactgaggagtttggttctggggtcccttggatcaatc
ctgctatagtttggatacccaatgttttccaaggcctaggtatgaagact
tgggagaaggtagaaacttttgggatggggcctagtgtgagaaggtcact
aggggtgtaccctcaagtgagaccctgtctctctttgcttcccggaggtg
agatgagcagtttcatgctctcaccatgatgctctgctccctatagatcc
ctagagcaacaggaccgccgaccatagacagcaagctctggaatcgcaag
ccaaaatcaaccttcattccttccagttactccaggtcacagaagtggaa
ggtccaaacggacaccgtcagcggtgacacttacgtcaagattcctggct
caactgcttgtcctgctgacacctttattttactcttgcattttttccag
aatgaggagcggagaggaggcagccttttgaaggcccaagattggattga
gccaaaggatttaattagggggctttgttatcccacgactgtggacatcc
agatgtcagagctgtggcatgcgccctcatt
gaattcattttagtgggtgatgtgaggaagggattcaatatctggttccc
ccctccagctcactctcaaagagactctcattttcccccttcctgtcacg
tggtgtgatggtttgtatatgtttggcccagggtgtggctcctttaggag
gtgtagccttgttggagtaggtgtgtcactgtgggtatgggctttaagac
cctcatgctagctgcttggaagtcagtctttcactagcagccttcagatg
aagatgtagaactctcagctctgcctgcaccatgcctgcttggatgttgt
tcttggtcccttaagcggcactttttgcactggagttttgacctgttagg
atatatactaaggtcattcaataaaatttgggcctcccttcttagaattg
ggaacaaaacacccagggaaggagttacagagacaaagtttggagctgag
atgaaaggatggaccatctagagactaccatccgataatcagcctccaaa
tgctgacaccattgcatacactagcaagattttgctgaaaggaccctgat
atagctttctcttgtgagactatgccaggcctagcaaacacagaagtgga
tgctcacagtcagctattggatggatcacagggcccccaatggaggagct
agagaaagtacccaaggagctgggggaggggggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75527552_75528425
seq2: B6Ng01-221N10.b_46_926 (reverse)

seq1  AATGA-GGCGCATGCCACAGCTCTGACATCTTGATGTCCACAGTCGT-GG  48
      ||||| ||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AATGAGGGCGCATGCCACAGCTCTGACATCTGGATGTCCACAGTCGTGGG  50

seq1  ATAAACAAG-CCCCTAATTAAATCCTTTGGCTCAATCCAATCTTGGGCCT  97
      ||||  ||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGCCCCCTAATTAAATCCTTTGGCTCAATCCAATCTTGGGCCT  100

seq1  TC-AAAGGCTGCCTCCTCTCCGCTCCTCATTCTGG-AAAAATGCAAGAGT  145
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAAAAGGCTGCCTCCTCTCCGCTCCTCATTCTGGAAAAAATGCAAGAGT  150

seq1  AAA--TAAGGTGTCAGCAGGACAAGCAGTTGAGCCAGGAATCTTGACGTA  193
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGGTGTCAGCAGGACAAGCAGTTGAGCCAGGAATCTTGACGTA  200

seq1  AGTGTCACCGCTGACGGTGTCCGTTTGGACCTTCCACTTCTGTGACCTGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACCGCTGACGGTGTCCGTTTGGACCTTCCACTTCTGTGACCTGG  250

seq1  AGTAACTGGAAGGAATGAAGGTTGATTTTGGCTTGCGATTCCAGAGCTTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGGAAGGAATGAAGGTTGATTTTGGCTTGCGATTCCAGAGCTTG  300

seq1  CTGTCTATGGTCGGCGGTCCTGTTGCTCTAGGGATCTATAGGGAGCAGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGGTCGGCGGTCCTGTTGCTCTAGGGATCTATAGGGAGCAGAG  350

seq1  CATCATGGTGAGAGCATGAAACTGCTCATCTCACCTCCGGGAAGCAAAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGTGAGAGCATGAAACTGCTCATCTCACCTCCGGGAAGCAAAGA  400

seq1  GAGACAGGGTCTCACTTGAGGGTACACCCCTAGTGACCTTCTCACACTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTCTCACTTGAGGGTACACCCCTAGTGACCTTCTCACACTAG  450

seq1  GCCCCATCCCAAAAGTTTCTACCTTCTCCCAAGTCTTCATACCTAGGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCCCAAAAGTTTCTACCTTCTCCCAAGTCTTCATACCTAGGCCT  500

seq1  TGGAAAACATTGGGTATCCAAACTATAGCAGGATTGATCCAAGGGACCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACATTGGGTATCCAAACTATAGCAGGATTGATCCAAGGGACCCC  550

seq1  AGAACCAAACTCCTCAGTACCCACTGAGGCAGGAGCAATCACTAAAGCGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAACTCCTCAGTACCCACTGAGGCAGGAGCAATCACTAAAGCGA  600

seq1  ACCAATCCAGACCAAGCTATAATATTTTTAGAATCAGCTCCTTTTTTTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCAGACCAAGCTATAATATTTTTAGAATCAGCTCCTTTTTTTCA  650

seq1  CATTGCTCTCTCCAGCCCATCTTTTCCCGGTTGTAAGTTTGGTTCTGTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTCTCCAGCCCATCTTTTCCCGGTTGTAAGTTTGGTTCTGTAG  700

seq1  TGGCATCCCCAAGACTAACCCATCCCAAAGGACAGGCTGCCATTTGTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCCCAAGACTAACCCATCCCAAAGGACAGGCTGCCATTTGTGGG  750

seq1  AGGAGCCAGACAGGCTTAGGAGTCTCTAATCTCTTAGCATGAGGTTGGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGACAGGCTTAGGAGTCTCTAATCTCTTAGCATGAGGTTGGGG  800

seq1  GGGGGAGGCAGGAGGGGGGACACCTTTAGGCTCTCACATGGCAGCTTAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGCAGGAGGGGGGACACCTTTAGGCTCTCACATGGCAGCTTAGA  850

seq1  AAAGGGCCACTTCCTGCCCAACTCAGAATTC  874
      |||||||||||||||||||||||||||||||
seq2  AAAGGGCCACTTCCTGCCCAACTCAGAATTC  881

seq1: chr15_75382344_75383029
seq2: B6Ng01-221N10.g_70_755

seq1  GAATTCATTTTAGTGGGTGATGTGAGGAAGGGATTCAATATCTGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTAGTGGGTGATGTGAGGAAGGGATTCAATATCTGGTTCCC  50

seq1  CCCTCCAGCTCACTCTCAAAGAGACTCTCATTTTCCCCCTTCCTGTCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGCTCACTCTCAAAGAGACTCTCATTTTCCCCCTTCCTGTCACG  100

seq1  TGGTGTGATGGTTTGTATATGTTTGGCCCAGGGTGTGGCTCCTTTAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGATGGTTTGTATATGTTTGGCCCAGGGTGTGGCTCCTTTAGGAG  150

seq1  GTGTAGCCTTGTTGGAGTAGGTGTGTCACTGTGGGTATGGGCTTTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCTTGTTGGAGTAGGTGTGTCACTGTGGGTATGGGCTTTAAGAC  200

seq1  CCTCATGCTAGCTGCTTGGAAGTCAGTCTTTCACTAGCAGCCTTCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTAGCTGCTTGGAAGTCAGTCTTTCACTAGCAGCCTTCAGATG  250

seq1  AAGATGTAGAACTCTCAGCTCTGCCTGCACCATGCCTGCTTGGATGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGAACTCTCAGCTCTGCCTGCACCATGCCTGCTTGGATGTTGT  300

seq1  TCTTGGTCCCTTAAGCGGCACTTTTTGCACTGGAGTTTTGACCTGTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCCTTAAGCGGCACTTTTTGCACTGGAGTTTTGACCTGTTAGG  350

seq1  ATATATACTAAGGTCATTCAATAAAATTTGGGCCTCCCTTCTTAGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTAAGGTCATTCAATAAAATTTGGGCCTCCCTTCTTAGAATTG  400

seq1  GGAACAAAACACCCAGGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAACACCCAGGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG  450

seq1  ATGAAAGGATGGACCATCTAGAGACTACCATCCGATAATCAGCCTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGATGGACCATCTAGAGACTACCATCCGATAATCAGCCTCCAAA  500

seq1  TGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGAT  550

seq1  ATAGCTTTCTCTTGTGAGACTATGCCAGGCCTAGCAAACACAGAAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCTCTTGTGAGACTATGCCAGGCCTAGCAAACACAGAAGTGGA  600

seq1  TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  650

seq1  AGAGAAAGTACCCAAGGAGCTGGGGGAGGGGGGTCT  686
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTACCCAAGGAGCTGGGGGAGGGGGGTCT  686