BAC Information

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BAC

Clone NameB6Ng01-222H16
Chromosome15 (Build37)
Map Location 102,845,721 - 103,052,547
singlet/doubletdoublet
Overlap geneHoxc5, Hoxc4, LOC432989, Smug1, Cbx5
Upstream geneKrt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6
Downstream geneHnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222H16.bB6Ng01-222H16.g
ACCGA037483GA037484
length1,1281,183
definitionB6Ng01-222H16.b B6Ng01-222H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,051,445 - 103,052,547)(102,845,721 - 102,846,892)
sequence
gaattcattgattatgcatctggatactacaaccaaataatttggtaatt
cagtgaagtattcaccagttagttatccatattgctttgtttctttaatt
ggcaatgaaaaaaataatgtgcctgctatgccatgctcctttaagaagac
tagagctgagcagggactttgtggagagtttggctcagtaattgcttaat
gctaacagttagccattatacctattattctggattgatagggaccagca
gatttctttactctagaattttgtgtcctctccccccccccccccctttt
tttttctttgtgtagctctggctgttctggaaatcacagtgatgggtctg
cttctaccttcccagtgttcgaattaaaggtgtgtgtcatcccttctctt
ctttctgcaacacccccctacacacacacacacacacacacacacacaca
tatcttgtattttgaagattcaacctttaaataatcccttgtcagtggtt
tggaatgtgggtttgactcagcctgaccacaaagttctttcttgctttcc
caagactgatttctgtccacatctctggctgaggagcctatagggtgaat
ttgccttatgtcacttataggaaggtctgttggtaccagtcttttcttag
ccctatgggttctaattgctgcaatctatggtatatactccattagtatt
taagagaagactgaaagctgttttgcttgaaaaggctctctagaaacctg
agaagttcctcagtccttcccatgaagatttccataaggatacggttgct
tgtcctcttttcttctgccatagtatcaggattctgctgtaatcgctcca
tcatccctgccggctgtatctcatttcttaatactggaatgcttctcctt
cccaggcctcagcttgatccaccagttcccgattgcttttatcttgggaa
cagggactagccttaaaattgtccgtcctggcctttgtgtttcatttgaa
ccctatacacttggggttggcactgtctaaaagaagaaattatgtctccc
tcccaatgtctgagtggcattttcctcatttctaactgcagctctctgaa
ccagattctgttactttcaagggttaag
gaattccattttaaccgctacctcactcgccgcaggcgcatagagattgc
caacaacttgtgtctcaacgagagacagatcaagatctggttccagaacc
gcaggatgaagtggaagaaagattccaaaatgaagagcaaagaagctctt
tagaggaagcagggagccctcagagagcaccccggtctgctgtggtccct
gcgcccttccttttcggttttcctccttctagattttgaggcggaggcta
gagcactggctccgggcctcccagacaaaagcgcatttctttggcattcc
gaatccccatcgacccagggttccgcaggaccgcctgcactgcctgtctt
gcctcagctcagctgagcaccccaggcccggggcacattcttgtagggcg
ggtactggataagtctcagcctgggctgcctctctcggctccgagcccta
gttcagctagcctgagttaaggtgagacagactgactgtaaccccttctc
cccgacctccgcctcaccctcttctttgttcctgcctaggctgaccagcc
tgctgaaggctggttgtgccaggcagaggctatgactagctagaatcggg
gtgctttcaactaacctttgtaacttctaaactgtctttgctcattaatt
atttgcatatgaaagagggagataagtgaaagtgggcctgtaaccccgga
ggttgtcctatgctctctataccttccaatccccttcccaaagcccggga
acttccctagcctggcttgctgcatgcactcttcaggttcacagttccag
cctgctagctagctcaactattggggtctcttgtctttggaccctagcaa
gttgttctttgaggctttttgctatcctatatatcttgccatgactttct
taacctttcctgccccattgcagttgccaacttatttattggactccaag
ctctttcctgaaactatatttttgtcatatcaaataaagccagaaaagaa
caggactaaagattcaatttacttctgtcttgtttagggcatgcattgaa
ttgattgttgttcttaaatagggctcttggagatgtattgggaggcccag
tctttaaaccattccttaaaaaatatttttaactacctttaggagccagc
cagaatgaccatggaactggattcttttcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103051445_103052547
seq2: B6Ng01-222H16.b_39_1166 (reverse)

seq1  CTTAA-CCTTG-AAGTTACAG-ATCT-GCTCAG-GAGCTGCAGTTAGAAA  45
      ||||| ||||| |||| |||| |||| | |||| ||||||||||||||||
seq2  CTTAACCCTTGAAAGTAACAGAATCTGGTTCAGAGAGCTGCAGTTAGAAA  50

seq1  TGAG--AAATG-CACTCAGACA-TGGGAGGG-GACATAATT--CTCTTTT  88
      ||||  ||||| |||||||||| |||||||| |||||||||   ||||||
seq2  TGAGGAAAATGCCACTCAGACATTGGGAGGGAGACATAATTTCTTCTTTT  100

seq1  AGACAGTG-CAACCC--AGTGTATTAGGGTCAAATGAAACACAAA-GCCA  134
      |||||||| ||||||  |||||||  || |||||||||||||||| ||||
seq2  AGACAGTGCCAACCCCAAGTGTATAGGGTTCAAATGAAACACAAAGGCCA  150

seq1  -GACGGACAA-TTTAAGGCTAGTCCCTGTACC--AGAT-AAAGC-ATCGG  178
       ||||||||| |||||||||||||||||| ||  |||| ||||| |||||
seq2  GGACGGACAATTTTAAGGCTAGTCCCTGTTCCCAAGATAAAAGCAATCGG  200

seq1  G-ACTGGTGGATCAAGCTGA-GCCTGGGAAGGAGAAGCATTCCAGTATT-  225
      | |||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GAACTGGTGGATCAAGCTGAGGCCTGGGAAGGAGAAGCATTCCAGTATTA  250

seq1  AGAAATGAGATACAGCCGGCA-GGATGATGGAGCGATTACAGCAGAATCC  274
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAATGAGATACAGCCGGCAGGGATGATGGAGCGATTACAGCAGAATCC  300

seq1  TGATACTATGGCAGAAGAAAAGAGGACAAGCAACCGTATCCTTATGGAAA  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTATGGCAGAAGAAAAGAGGACAAGCAACCGTATCCTTATGGAAA  350

seq1  TCTTCATGGGAAGGACTGAGGAACTTCTCAGGTTTCTAGAGAGCCTTTTC  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGGAAGGACTGAGGAACTTCTCAGGTTTCTAGAGAGCCTTTTC  400

seq1  AAGCAAAACAGCTTTCAGTCTTCTCTTAAATACTAATGGAGTATATACCA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACAGCTTTCAGTCTTCTCTTAAATACTAATGGAGTATATACCA  450

seq1  TAGATTGCAGCAATTAGAACCCATAGGGCTAAGAAAAGACTGGTACCAAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCAGCAATTAGAACCCATAGGGCTAAGAAAAGACTGGTACCAAC  500

seq1  AGACCTTCCTATAAGTGACATAAGGCAAATTCACCCTATAGGCTCCTCAG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCCTATAAGTGACATAAGGCAAATTCACCCTATAGGCTCCTCAG  550

seq1  CCAGAGATGTGGACAGAAATCAGTCTTGGGAAAGCAAGAAAGAACTTTGT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGTGGACAGAAATCAGTCTTGGGAAAGCAAGAAAGAACTTTGT  600

seq1  GGTCAGGCTGAGTCAAACCCACATTCCAAACCACTGACAAGGGATTATTT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCTGAGTCAAACCCACATTCCAAACCACTGACAAGGGATTATTT  650

seq1  AAAGGTTGAATCTTCAAAATACAAGATATGTGTGTGTGTGTGTGTGTGTG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGAATCTTCAAAATACAAGATATGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGTGTGTGTAGGGGGGTGTTGCAGAAAGAAGAGAAGGGATGACACACACC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAGGGGGGTGTTGCAGAAAGAAGAGAAGGGATGACACACACC  750

seq1  TTTAATTCGAACACTGGGAAGGTAGAAGCAGACCCATCACTGTGATTTCC  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCGAACACTGGGAAGGTAGAAGCAGACCCATCACTGTGATTTCC  800

seq1  AGAACAGCCAGAGCTACACAAAGAAAAAAAAAGGGGGGGGGGGGGGGGAG  824
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAACAGCCAGAGCTACACAAAGAAAAAAAAA-GGGGGGGGGGGGGGGAG  849

seq1  AGGACACAAAATTCTAGAGTAAAGAAATCTGCTGGTCCCTATCAATCCAG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAAAATTCTAGAGTAAAGAAATCTGCTGGTCCCTATCAATCCAG  899

seq1  AATAATAGGTATAATGGCTAACTGTTAGCATTAAGCAATTACTGAGCCAA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGGTATAATGGCTAACTGTTAGCATTAAGCAATTACTGAGCCAA  949

seq1  ACTCTCCACAAAGTCCCTGCTCAGCTCTAGTCTTCTTAAAGGAGCATGGC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCACAAAGTCCCTGCTCAGCTCTAGTCTTCTTAAAGGAGCATGGC  999

seq1  ATAGCAGGCACATTATTTTTTTCATTGCCAATTAAAGAAACAAAGCAATA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGCACATTATTTTTTTCATTGCCAATTAAAGAAACAAAGCAATA  1049

seq1  TGGATAACTAACTGGTGAATACTTCACTGAATTACCAAATTATTTGGTTG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTAACTGGTGAATACTTCACTGAATTACCAAATTATTTGGTTG  1099

seq1  TAGTATCCAGATGCATAATCAATGAATTC  1103
      |||||||||||||||||||||||||||||
seq2  TAGTATCCAGATGCATAATCAATGAATTC  1128

seq1: chr15_102845721_102846892
seq2: B6Ng01-222H16.g_68_1250

seq1  GAATTCCATTTTAACCGCTACCTCACTCGCCGCAGGCGCATAGAGATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTAACCGCTACCTCACTCGCCGCAGGCGCATAGAGATTGC  50

seq1  CAACAACTTGTGTCTCAACGAGAGACAGATCAAGATCTGGTTCCAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTTGTGTCTCAACGAGAGACAGATCAAGATCTGGTTCCAGAACC  100

seq1  GCAGGATGAAGTGGAAGAAAGATTCCAAAATGAAGAGCAAAGAAGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGAAGTGGAAGAAAGATTCCAAAATGAAGAGCAAAGAAGCTCTT  150

seq1  TAGAGGAAGCAGGGAGCCCTCAGAGAGCACCCCGGTCTGCTGTGGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGCAGGGAGCCCTCAGAGAGCACCCCGGTCTGCTGTGGTCCCT  200

seq1  GCGCCCTTCCTTTTCGGTTTTCCTCCTTCTAGATTTTGAGGCGGAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTTCCTTTTCGGTTTTCCTCCTTCTAGATTTTGAGGCGGAGGCTA  250

seq1  GAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCC  300

seq1  GAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTT  350

seq1  GCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCG  400

seq1  GGTACTGGATAAGTCTCAGCCTGGGCTGCCTCTCTCGGCTCCGAGCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGATAAGTCTCAGCCTGGGCTGCCTCTCTCGGCTCCGAGCCCTA  450

seq1  GTTCAGCTAGCCTGAGTTAAGGTGAGACAGACTGACTGTAACCCCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTAGCCTGAGTTAAGGTGAGACAGACTGACTGTAACCCCTTCTC  500

seq1  CCCGACCTCCGCCTCACCCTCTTCTTTGTTCCTGCCTAGGCTGACCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACCTCCGCCTCACCCTCTTCTTTGTTCCTGCCTAGGCTGACCAGCC  550

seq1  TGCTGAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGG  600

seq1  GTGCTTTCAACTAACCTTTGTAACTTCTAAACTGTCTTTGCTCATTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCAACTAACCTTTGTAACTTCTAAACTGTCTTTGCTCATTAATT  650

seq1  ATTTGCATATGAAAGAGGGAGATAAGTGAAAGTGGGCCTGTAACCCCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATATGAAAGAGGGAGATAAGTGAAAGTGGGCCTGTAACCCCGGA  700

seq1  GGTTGTCCTATGCTCTCTATACCTTCCAATCCCCTTCCCAAAGCCCGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCTATGCTCTCTATACCTTCCAATCCCCTTCCCAAAGCCCGGGA  750

seq1  ACTTCCCTAGCCTGGCTTGCTGCATGCACTC-TCAGGTTCACAGTTCCAG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTCCCTAGCCTGGCTTGCTGCATGCACTCTTCAGGTTCACAGTTCCAG  800

seq1  CCTGCTAGCTAGCTCAACTATTGGGGTCTCTTGTCTTTGGACCCTAGCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGCTAGCTCAACTATTGGGGTCTCTTGTCTTTGGACCCTAGCAA  850

seq1  GTTGTTCTTTGAGGCTTTTTGCTATCCTATATATCTTGCCATGACTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTTGAGGCTTTTTGCTATCCTATATATCTTGCCATGACTTTCT  900

seq1  CA--CCTTCCTGCCCCATTGCAGTTGCCCAACTATTTATT-GACTCCAAG  946
       |  | |||||||||||||||||||||| |  |||||||| |||||||||
seq2  TAACCTTTCCTGCCCCATTGCAGTTGCCAACTTATTTATTGGACTCCAAG  950

seq1  C-CCTTCCTGAAACTATA-TTTTGTCATATCAAATAAAGCCAGAAAAAGA  994
      | | |||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CTCTTTCCTGAAACTATATTTTTGTCATATCAAATAAAGCCAG-AAAAGA  999

seq1  ACAGGACTAAAGATTCAA-TTACTTCTGTC-TGTTTAGGGCATGCATTGA  1042
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  ACAGGACTAAAGATTCAATTTACTTCTGTCTTGTTTAGGGCATGCATTGA  1049

seq1  ATTGA----TGTGTCTAAATA-GGCTCT--GAGATGTATTGGGAGGCCCA  1085
      |||||    |||   |||||| ||||||  ||||||||||||||||||||
seq2  ATTGATTGTTGTTCTTAAATAGGGCTCTTGGAGATGTATTGGGAGGCCCA  1099

seq1  GTCTTTAAACCATCCCTTAAAAAATATTTTTAAACACCTTTAGGAG-CAG  1134
      ||||||||||||| |||||||||||||||||||  ||||||||||| |||
seq2  GTCTTTAAACCATTCCTTAAAAAATATTTTTAACTACCTTTAGGAGCCAG  1149

seq1  CAAGAATAGGGAACAATGGAACTGAGTTCTTTTCTTGA  1172
      | |||||     || |||||||||  ||||||||||||
seq2  CCAGAAT----GACCATGGAACTGGATTCTTTTCTTGA  1183