BAC Information

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BAC

Clone NameB6Ng01-222L13
Chromosome15 (Build37)
Map Location 72,139,984 - 72,247,854
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222L13.bB6Ng01-222L13.g
ACCGA037660GA037661
length1,2161,179
definitionB6Ng01-222L13.b B6Ng01-222L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,139,984 - 72,141,179)(72,246,664 - 72,247,854)
sequence
gaattcctgcctcagagtaaggctggggttcaagctccagcactttaaaa
ggaaaggaaaaatgtaagcccgtcagtcctcctaggaaaagcatctgtga
ggtctctgaatggtagctctcagcagccatgaggaagtccttcatgccac
atgctctgggaatgtggggtcttctcacagccactcagccatcatggctg
aagcaagggccatggagctgccacctgcctggtagaacagaggggaagct
ctggggaaacttcaggaaggagggagcccacaccacagcttcaagaaatg
gggcttactgttaaccctgcagtatgcagagagcttcagtaaaactaaga
gtcgccccatgactcaagactgcgactttcatggagcccacgatactaat
acttccttattattcctatgaattaacccactagtgttaatgagttaata
actaatatttcataaaatttataatcctcaggattatttcttatgaatta
actcattcacctgcccctcctttttacctttgagtctgcttaaaagcttt
ttttttttttttcatacacaacggggctgtaacacatgtttctgtgggtc
tctgtgacaagcagtggtgagatataagagcccacccactgtgggttccg
gtccgagaaggtgtttggtaggatgggccttgttgaaggtctgtcctgtg
agtcttcccacctttgtcttcagccgtcactggctggaataaccaagctg
aattttcctaagatttcatctgtgcttattggagaaactgaccaggaaaa
cacagactgttctattatccctgcttattttatcatggtgtgtcctgttc
ccgtggcactgaggcaacctttgagaaagagcttctagttctggcacagc
agcaggacagacaaaccaggacaagttggtaatttacccacttctcaccg
gagctgggggaaagaactgcccaggttcatcttttatttgttcagcttgc
ctagatttgatatcacttaggagaccacaccactgggcatgtcttgttga
ctttctccagaggttctagcagagtagaagaagacccacttctgaagaat
ggggcagcactatcatgggcctggagaccagactgaaataagaagaggta
gcttaaattaccagcattcatttccaatcttgcctctgactgtggaatgc
ccacgtgtttcagctg

gaattcagtacaccccaggaagaagaagagtttctgtctctgttgacagt
tccaatgttgacatcaaagcagcatcccacctgggaatctgtcccttact
tgatacaggtgttgctgagtttagctcgtaaggatgattcctgttacccc
ctatagtaggcatgtgtaggcaatacaataactttgtgtagctcaatgtt
caaagtgacataaagagttttttaactaggaggattaaattacaaaagca
tgtgaagtatcttcatgtgtttgtaataaccattaaagcaatttctcttt
ggtacaatcagccagggggctaccttgaaagggtgtgtcaatgttgctct
tttgggtgacagcatactgtcgttaccccttcctgagaataaactgggtc
agagacacttgtcagcctgtgcaattccttctcagctcccactcctctcc
ctgagtccctgctccctgtgcaaggtgtcactgtctctgccttgctatca
ttgagtttgtcttggagtgagacctttatccctctcaccccccttttgaa
aactgagatcagattgtagattctagcttcccctgaagttaagagggcag
ggagtggcatttgattaggtataaatgcttgtgtttatcagaatggactg
taaaggaacagggtgctctgctggactctatacattcatccaaacatggt
gaatacactcaatttttatttgtcagttacacatcaacaaagctggagta
aaggaggaggaagaggaggaagaaaaagaggaagaggaataataggagta
aaacaggctctgagtccttgttatgacagcaatcttgcaatagggttttt
ggagacgccttcatgtttctgcttgcttctgggtagcctggcattgatta
acaaccaaacccaaaccaaatcaaaccaaatcaaacaaaccaaacaaaac
ctacaatgttaacaacataaacattctgacgattgctgagtaatccaatg
gccttcagtgatttgaaataactttacaaatccaattatatttttttttt
cgtcctgtactgggatgactggggtttactcaattggaactatagagctt
tatgaaatggcttgtttatgctcttctgtaacagtgcttgaacgctagaa
tcaggggtgactgtcagggcagcaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72139984_72141179
seq2: B6Ng01-222L13.b_44_1259

seq1  GAATTCCTGCCTCAGAGTAAGGCTGGGGTTCAAGCTCCAGCACTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTCAGAGTAAGGCTGGGGTTCAAGCTCCAGCACTTTAAAA  50

seq1  GGAAAGGAAAAATGTAAGCCCGTCAGTCCTCCTAGGAAAAGCATCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAAAATGTAAGCCCGTCAGTCCTCCTAGGAAAAGCATCTGTGA  100

seq1  GGTCTCTGAATGGTAGCTCTCAGCAGCCATGAGGAAGTCCTTCATGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGAATGGTAGCTCTCAGCAGCCATGAGGAAGTCCTTCATGCCAC  150

seq1  ATGCTCTGGGAATGTGGGGTCTTCTCACAGCCACTCAGCCATCATGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGGGAATGTGGGGTCTTCTCACAGCCACTCAGCCATCATGGCTG  200

seq1  AAGCAAGGGCCATGGAGCTGCCACCTGCCTGGTAGAACAGAGGGGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGGCCATGGAGCTGCCACCTGCCTGGTAGAACAGAGGGGAAGCT  250

seq1  CTGGGGAAACTTCAGGAAGGAGGGAGCCCACACCACAGCTTCAAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAACTTCAGGAAGGAGGGAGCCCACACCACAGCTTCAAGAAATG  300

seq1  GGGCTTACTGTTAACCCTGCAGTATGCAGAGAGCTTCAGTAAAACTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTACTGTTAACCCTGCAGTATGCAGAGAGCTTCAGTAAAACTAAGA  350

seq1  GTCGCCCCATGACTCAAGACTGCGACTTTCATGGAGCCCACGATACTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCCATGACTCAAGACTGCGACTTTCATGGAGCCCACGATACTAAT  400

seq1  ACTTCCTTATTATTCCTATGAATTAACCCACTAGTGTTAATGAGTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTATTATTCCTATGAATTAACCCACTAGTGTTAATGAGTTAATA  450

seq1  ACTAATATTTCATAAAATTTATAATCCTCAGGATTATTTCTTATGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTTCATAAAATTTATAATCCTCAGGATTATTTCTTATGAATTA  500

seq1  ACTCATTCACCTGCCCCTCCTTTTTACCTTTGAGTCTGCTTAAAAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCACCTGCCCCTCCTTTTTACCTTTGAGTCTGCTTAAAAGCTTT  550

seq1  TTTTTTTTTTTTCATACACAACGGGGCTGTAACACATGTTTCTGTGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCATACACAACGGGGCTGTAACACATGTTTCTGTGGGTC  600

seq1  TCTGTGACAAGCAGTGGTGAGATATAAGAGCCCACCCACTGTGGGTTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACAAGCAGTGGTGAGATATAAGAGCCCACCCACTGTGGGTTCCG  650

seq1  GTCCGAGAAGGTGTTTGGTAGGATGGGCCTTGTTGAAGGTCTGTCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAGAAGGTGTTTGGTAGGATGGGCCTTGTTGAAGGTCTGTCCTGTG  700

seq1  AGTCTTCCCACCTTTGTCTTCAGCCGTCACTGGCTGGAATAACCAAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCCACCTTTGTCTTCAGCCGTCACTGGCTGGAATAACCAAGCTG  750

seq1  AATTTTCCTAAGATTTCATCTGTGCTTATTGGAGAAACTGACCAGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTAAGATTTCATCTGTGCTTATTGGAGAAACTGACCAGGAAAA  800

seq1  CACAGACTGTTCTATTATCCCTGCTTATTTTATCATGGTGTGTCCTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGTTCTATTATCCCTGCTTATTTTATCATGGTGTGTCCTGTTC  850

seq1  CCGTGGCACTGAGGCAACC-TTGAGAAAGAGCTTCTAGTTCTGGCACAGC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCGTGGCACTGAGGCAACCTTTGAGAAAGAGCTTCTAGTTCTGGCACAGC  900

seq1  AGCAGGACAGACAAACCAGGACAAGTTGGTAATTAACCCAC-TCTCAACG  948
      |||||||||||||||||||||||||||||||||| |||||| ||||| ||
seq2  AGCAGGACAGACAAACCAGGACAAGTTGGTAATTTACCCACTTCTCACCG  950

seq1  GAGCT-GGGGAAAGAACTGCCCAGGTTCATCTTT--ATTGTCCAGC-TGC  994
      ||||| ||||||||||||||||||||||||||||   |||| |||| |||
seq2  GAGCTGGGGGAAAGAACTGCCCAGGTTCATCTTTTATTTGTTCAGCTTGC  1000

seq1  CTAGATTTGATATCACTTAGGAGA-CACACCACT-GGCATGTCT--GTGA  1040
      |||||||||||||||||||||||| ||||||||| |||||||||   |||
seq2  CTAGATTTGATATCACTTAGGAGACCACACCACTGGGCATGTCTTGTTGA  1050

seq1  CTTTCCCCAGAGG-TCTAGCAGAGTAG-AGAAGACACAC-TCTGAAGA--  1085
      ||||| ||||||| ||||||||||||| ||||||| ||| ||||||||  
seq2  CTTTCTCCAGAGGTTCTAGCAGAGTAGAAGAAGACCCACTTCTGAAGAAT  1100

seq1  TGGGCAGCACTATCCATGGCCTGGAGACCCAGACTG-AATAAGAAGAAGT  1134
       |||||||||||||   |||||||||| |||||||| |||||||||| ||
seq2  GGGGCAGCACTATCATGGGCCTGGAGA-CCAGACTGAAATAAGAAGAGGT  1149

seq1  AAGCTAAA-TACCAGCATTCATTT-CTATC-TGCCTCCTGACTGTGG-AT  1180
      |   |||| ||||||||||||||| | ||| ||||| |||||||||| ||
seq2  AGCTTAAATTACCAGCATTCATTTCCAATCTTGCCT-CTGACTGTGGAAT  1198

seq1  G-CCACGTG-TCCAGCTG  1196
      | ||||||| | ||||||
seq2  GCCCACGTGTTTCAGCTG  1216


seq1: chr15_72246664_72247854
seq2: B6Ng01-222L13.g_69_1247 (reverse)

seq1  AACC-TGCTGGCCTGACAGTCACCCCTTGATCCCTAGCGTCAAACCACCC  49
      |||| ||||| ||||||||||||||| ||||  |||||||  || ||  |
seq2  AACCTTGCTGCCCTGACAGTCACCCC-TGAT-TCTAGCGTTCAAGCA--C  46

seq1  TGTGTACAG-AGAGCATAAACAACCAATTTCATAAAACCTCTTTAG-TCC  97
      ||| ||||| ||||||||||||| | ||||||| ||| |||| ||| |||
seq2  TGT-TACAGAAGAGCATAAACAAGCCATTTCAT-AAAGCTCTATAGTTCC  94

seq1  AAATGAGTAAACCCAAGTCAACCAAGTACAGGGACGAAAAAAAAAATAAT  147
      || ||||||||||| ||||| || |||||| |||||||||||||||| ||
seq2  AATTGAGTAAACCCCAGTCATCCCAGTACA-GGACGAAAAAAAAAAT-AT  142

seq1  AATTGGGATTTGTAAAGTTATTTCAAAATCACTGAAGGCCATTTGGATTA  197
      |||| ||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AATT-GGATTTGTAAAGTTATTTC-AAATCACTGAAGGCCA-TTGGATTA  189

seq1  CTCAGCAATCGTTCAGAATGTTTATGTTGTTAACATTTGTAGGTTTTGTT  247
      ||||||||||| ||||||||||||||||||||||| |||||||||||| |
seq2  CTCAGCAATCG-TCAGAATGTTTATGTTGTTAACA-TTGTAGGTTTTG-T  236

seq1  TTGGTTTGTTTTGTTTTGGTTTGTTTTGGTTT-GGTTTGGTTGTTTAATC  296
      |||||||| |||| ||||||||| |||||||| |||||||||| ||||||
seq2  TTGGTTTG-TTTGATTTGGTTTGATTTGGTTTGGGTTTGGTTG-TTAATC  284

seq1  AATGCCAGGCTACCCAGAAGCAAGCAGAAACATGAAGGCGTCTCCAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGCTACCCAGAAGCAAGCAGAAACATGAAGGCGTCTCCAAAAA  334

seq1  CCCTATTGCAAGATTGCTGTCATAACAAGGACTCAGAGCCTGTTTTACTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGCAAGATTGCTGTCATAACAAGGACTCAGAGCCTGTTTTACTC  384

seq1  CTATTATTCCTCTTCCTCTTTTTCTTCCTCCTCTTCCTCCTCCTTTACTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTCCTCTTCCTCTTTTTCTTCCTCCTCTTCCTCCTCCTTTACTC  434

seq1  CAGCTTTGTTGATGTGTAACTGACAAATAAAAATTGAGTGTATTCACCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGTTGATGTGTAACTGACAAATAAAAATTGAGTGTATTCACCAT  484

seq1  GTTTGGATGAATGTATAGAGTCCAGCAGAGCACCCTGTTCCTTTACAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATGAATGTATAGAGTCCAGCAGAGCACCCTGTTCCTTTACAGTC  534

seq1  CATTCTGATAAACACAAGCATTTATACCTAATCAAATGCCACTCCCTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGATAAACACAAGCATTTATACCTAATCAAATGCCACTCCCTGCC  584

seq1  CTCTTAACTTCAGGGGAAGCTAGAATCTACAATCTGATCTCAGTTTTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTTCAGGGGAAGCTAGAATCTACAATCTGATCTCAGTTTTCAA  634

seq1  AAGGGGGGTGAGAGGGATAAAGGTCTCACTCCAAGACAAACTCAATGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGTGAGAGGGATAAAGGTCTCACTCCAAGACAAACTCAATGATA  684

seq1  GCAAGGCAGAGACAGTGACACCTTGCACAGGGAGCAGGGACTCAGGGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAGAGACAGTGACACCTTGCACAGGGAGCAGGGACTCAGGGAGA  734

seq1  GGAGTGGGAGCTGAGAAGGAATTGCACAGGCTGACAAGTGTCTCTGACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGAGCTGAGAAGGAATTGCACAGGCTGACAAGTGTCTCTGACCC  784

seq1  AGTTTATTCTCAGGAAGGGGTAACGACAGTATGCTGTCACCCAAAAGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCTCAGGAAGGGGTAACGACAGTATGCTGTCACCCAAAAGAGC  834

seq1  AACATTGACACACCCTTTCAAGGTAGCCCCCTGGCTGATTGTACCAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGACACACCCTTTCAAGGTAGCCCCCTGGCTGATTGTACCAAAGA  884

seq1  GAAATTGCTTTAATGGTTATTACAAACACATGAAGATACTTCACATGCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTTTAATGGTTATTACAAACACATGAAGATACTTCACATGCTT  934

seq1  TTGTAATTTAATCCTCCTAGTTAAAAAACTCTTTATGTCACTTTGAACAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTAATCCTCCTAGTTAAAAAACTCTTTATGTCACTTTGAACAT  984

seq1  TGAGCTACACAAAGTTATTGTATTGCCTACACATGCCTACTATAGGGGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACACAAAGTTATTGTATTGCCTACACATGCCTACTATAGGGGGT  1034

seq1  AACAGGAATCATCCTTACGAGCTAAACTCAGCAACACCTGTATCAAGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATCATCCTTACGAGCTAAACTCAGCAACACCTGTATCAAGTAA  1084

seq1  GGGACAGATTCCCAGGTGGGATGCTGCTTTGATGTCAACATTGGAACTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGATTCCCAGGTGGGATGCTGCTTTGATGTCAACATTGGAACTGT  1134

seq1  CAACAGAGACAGAAACTCTTCTTCTTCCTGGGGTGTACTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGACAGAAACTCTTCTTCTTCCTGGGGTGTACTGAATTC  1179


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