BAC Information

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BAC

Clone NameB6Ng01-223F23
Chromosome15 (Build37)
Map Location 102,573,956 - 102,714,980
singlet/doubletdoublet
Overlap geneLOC637762, LOC100043050
Upstream geneKrt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223F23.bB6Ng01-223F23.g
ACCGA038133GA038134
length312913
definitionB6Ng01-223F23.b B6Ng01-223F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,714,671 - 102,714,980)(102,573,956 - 102,574,864)
sequence
tcctttgattagagacctaagaatagccctgtttgaaaggagggctctct
cactttttatattcattgctcacattacaaacagtcctgtcagctggcca
gtggtggcacatgcctttaatcccagcactcgggaggcagaggcaggcgg
atttctgagtttgaggccagcctggtcttcagtagtgagttctaggacag
ccagggcttatacagagaaaccctgtttctaaaaaccaaacaacatttac
aacaacaacaacgacaaaacatatccatcctgtcctctgaggtcttttaa
gtatactctgat
gaattcactgaaccaggcactagtttgagtgcctactgtgtacaggagca
gttcatatgtttcttgaagggggggggcaaaaagggggcagaccccacat
ttactgcttcttttcttgtatgctttttaagacaccaagctagcctcaaa
actgaggatgctcttggatttctgatccttttgcctccactctcagaatg
ttggggtagcaggtttaactcctgctccttttctgtttcatctccttgcc
agatagctggggtgcagagttttgatcctcaggtacttttctgttcttca
ctcccatccccaagagtaagcacctttactgggcttctcacctctctgcc
tgggtgccgggtgtgtgtgtatggagcacggggcttgggtgctcctagtg
tctctcccatagaggaactgaggttatgggggcaagtcacattaccataa
aggcccatggagcaggcagggagaggacagacatttggaatggtagagaa
ggtttggggaggagccgtgtgctgcagtcagagccggtgctgcattctaa
tcagcgctgcggaggctgcgcagcggccgtcaatcatccacacaaagggc
cgcccgcccccttccccctctcaggcctgcgcaccagccttcccactcca
tcctcagaacgtctgggcagtgctaagaggctggggttggggggagcaga
cccgccaacaggagggacccacgatacacccagtaaattcaagcagaaac
tcacagagtggggccattaccaagctgggtgggttcctagcaccctggag
gctgaagagagaaagagagagacaaagggacagacgttggaggggagaaa
tggaaggatagaggccagaaatagcgggaacctaagaactgactcaaact
aggtggcatcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102714671_102714980
seq2: B6Ng01-223F23.b_50_361 (reverse)

seq1  ATCAGAGTATACTTAAAAGACCTCAGAGGACAGGATTGTTTGGTTTTGTT  50
      |||||||||||||||||||||||||||||||||||| | |  ||||||| 
seq2  ATCAGAGTATACTTAAAAGACCTCAGAGGACAGGATGGATATGTTTTGTC  50

seq1  GTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTCGAGACAGGGTTTCTCTG  100
      ||||||||||||||   ||||||||||||||| || ||||||||||||||
seq2  GTTGTTGTTGTTGTAAATGTTGTTTGGTTTTTAGAAACAGGGTTTCTCTG  100

seq1  TAT-AGCCCTGGCTGTCCTAGAACTCACT-CTGTAGACCAGGCTGGCCTC  148
      ||| ||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TATAAGCCCTGGCTGTCCTAGAACTCACTACTGAAGACCAGGCTGGCCTC  150

seq1  AAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  200

seq1  ATGTGCCACCACTGGCCAGCTGACAGGACTGTTTGTAATGTGAGCAATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACCACTGGCCAGCTGACAGGACTGTTTGTAATGTGAGCAATGA  250

seq1  ATATAAAAAGTGAGAGAGCCCTCCTTTCAAACAGGGCTATTCTTAGGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAGTGAGAGAGCCCTCCTTTCAAACAGGGCTATTCTTAGGTCT  300

seq1  CTAATCAAAGGA  310
      ||||||||||||
seq2  CTAATCAAAGGA  312

seq1: chr15_102573956_102574864
seq2: B6Ng01-223F23.g_69_981

seq1  GAATTCACTGAACCAGGCACTAGTTTGAGTGCCTACTGTGTACAGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAACCAGGCACTAGTTTGAGTGCCTACTGTGTACAGGAGCA  50

seq1  GTTCATATGTTTCTTGAAGGGGGGGGGCAAAAAGGGGGCAGACCCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATGTTTCTTGAAGGGGGGGGGCAAAAAGGGGGCAGACCCCACAT  100

seq1  TTACTGCTTCTTTTCTTGTATGCTTTTTAAGACACCAAGCTAGCCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTCTTTTCTTGTATGCTTTTTAAGACACCAAGCTAGCCTCAAA  150

seq1  ACTGAGGATGCTCTTGGATTTCTGATCCTTTTGCCTCCACTCTCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATGCTCTTGGATTTCTGATCCTTTTGCCTCCACTCTCAGAATG  200

seq1  TTGGGGTAGCAGGTTTAACTCCTGCTCCTTTTCTGTTTCATCTCCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTAGCAGGTTTAACTCCTGCTCCTTTTCTGTTTCATCTCCTTGCC  250

seq1  AGATAGCTGGGGTGCAGAGTTTTGATCCTCAGGTACTTTTCTGTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTGGGGTGCAGAGTTTTGATCCTCAGGTACTTTTCTGTTCTTCA  300

seq1  CTCCCATCCCCAAGAGTAAGCACCTTTACTGGGCTTCTCACCTCTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCCCCAAGAGTAAGCACCTTTACTGGGCTTCTCACCTCTCTGCC  350

seq1  TGGGTGCCGGGTGTGTGTGTATGGAGCACGGGGCTTGGGTGCTCCTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCGGGTGTGTGTGTATGGAGCACGGGGCTTGGGTGCTCCTAGTG  400

seq1  TCTCTCCCATAGAGGAACTGAGGTTATGGGGGCAAGTCACATTACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCATAGAGGAACTGAGGTTATGGGGGCAAGTCACATTACCATAA  450

seq1  AGGCCCATGGAGCAGGCAGGGAGAGGACAGACATTTGGAATGGTAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATGGAGCAGGCAGGGAGAGGACAGACATTTGGAATGGTAGAGAA  500

seq1  GGTTTGGGGAGGAGCCGTGTGCTGCAGTCAGAGCCGGTGCTGCATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGAGGAGCCGTGTGCTGCAGTCAGAGCCGGTGCTGCATTCTAA  550

seq1  TCAGCGCTGCGGAGGCTGCGCAGCGGCCGTCAATCATCCACACAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTGCGGAGGCTGCGCAGCGGCCGTCAATCATCCACACAAAGGGC  600

seq1  CGCCCGCCCCCTTCCCCCTCTCAGGCCTGCGCACCAGCCTTCCCACTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCCCCCTTCCCCCTCTCAGGCCTGCGCACCAGCCTTCCCACTCCA  650

seq1  TCCTCAGAACGTCTGGGCAGTGCTAAGAGGCTGGGGTTGGGGGGAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAACGTCTGGGCAGTGCTAAGAGGCTGGGGTTGGGGGGAGCAGA  700

seq1  CCCGCCAACAGGAGGGACCCACGATACACCCAGTAAATTCAAGCAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAACAGGAGGGACCCACGATACACCCAGTAAATTCAAGCAGAAAC  750

seq1  TCACAGAGTGGGGCCATTACCAAGCTGGGTGGG-TCCTAGCACCCTGGAG  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCACAGAGTGGGGCCATTACCAAGCTGGGTGGGTTCCTAGCACCCTGGAG  800

seq1  GCTGAAGAGAGAAAGAGAGAGACAAAGGGACAGACGTGGAAGGGGAGAAA  849
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  GCTGAAGAGAGAAAGAGAGAGACAAAGGGACAGACGTTGGAGGGGAGAAA  850

seq1  TGG-AGGAGAGAGGCCAGAAATAGCGGGAA-CTAAG-ACTGACACAAAGC  896
      ||| |||| ||||||||||||||||||||| ||||| |||||| |||| |
seq2  TGGAAGGATAGAGGCCAGAAATAGCGGGAACCTAAGAACTGACTCAAA-C  899

seq1  TAGGT-GCATCCCC  909
      ||||| ||||||||
seq2  TAGGTGGCATCCCC  913