BAC Information

Click to search

BAC

Clone NameB6Ng01-224F16
Chromosome15 (Build37)
Map Location 42,785,563 - 42,914,123
singlet/doubletdoublet
Overlap geneRspo2
Upstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224F16.bB6Ng01-224F16.g
ACCGA038836GA038837
length1,1781,071
definitionB6Ng01-224F16.b B6Ng01-224F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,785,563 - 42,786,760)(42,913,080 - 42,914,123)
sequence
gaattcctctcactccaggaactcacagtggatggtcttctgagcttaat
gacaccataaataaatgtcccaataactcactacatttttcattacaatc
atctactgtctttacttatggcagggaaattacagtcgctggaagcaggt
tgggtctatgagatccactccatctcactttttttctggtcaatttcttc
tgagggtaacccttaacttccagcttgaaggaggctttctagttgctgta
tgaaaagagaaggctcttggtggtgagagaagggctaccatctttcattt
tactgttgtgacaaagttataaattccagtttagattcaaccagaatgtg
ttctcgcaaagagacctatttaagtttaaagattatcctgagaaagacaa
tatatcaaaacaagtgatagacttaactttagagatatggattccttgct
atcaatgagtatcccaaggtctcgtggtgtttggttacaattgttttaga
attttatcacaggagtcaatgtttcctcagtagctccttgaagctggaac
atccagagcatactctgaagctggccagtccagctactggtgcttgttct
ggtctcagatcaggttctagctacttctcccctcctatcctgtgttggtc
aaaagcagatctttttacactcaatctgagctgtctgataggccaggatc
ttcctactacatggacaatgctctgctaattcaaaggataagacaagttc
ttacaaatcagtagtttttttccaggtacaaaacccttaagcatctctta
ctggacatcactaatcacaggagttccgtgaatgttgtcttttttttaaa
tattttttttattacgtattttcctcaattacatttccaatgctatccca
aaagtcccccatacctcctcccactcccctacccacccactccccctttt
ggtctggcgttcccctgtactggggcatataagtttgcagtccaatggac
tctctttccagtgatgccgactaggcatctctgatacatattgcagctag
agtcaagagcttctgggttactggttagtccatatgtgttgcacttacag
ggttggcagaattcctttaagcctctggaatcttccttagtctcatggac
tgagttgtctgcaaacatcgccttctct

gaattcataaatgtaaacaaataaaaacttaaagacagaacagcaatgga
cccttgatctcagtctgcatagacgccaccatgcacgtttctcctatgta
ttctgttattgtttgatactgttagtgccacgtggctgtggcccatcact
ttggcattggcatccctgggataggggaatgagtgttaaggaaccatgtt
cttagggtctggcagcatcgtcggcacataccaggttcttggggaatgct
cggtatgaacaagactagagtataatttgaaaactgttactttagagact
gtatggtgtggtgttgggaggacaggcgagggggctgcccagcatgcttt
tctgtttcttggctaggataagcccttgtggcccaatgacagccctgtca
gcctgtgtttggccacagtttcacttggacagtaattttacttaaaccaa
tattggcagtgctcacttggtggattgcatttttgaggaggcactgtaat
gaagaagcatggaagttggctaaaggaggttcttacatttctgaacaagg
actttaaacacatacttttacagcaaaagcctatgcttagtaaattttga
tatacctattatatagtataaatttttcaaaggttaaaccaactactgca
tttcccattggcctttaaatggtgtttaacccattacatttatgtgttac
aaagaggtttcctgaaacacctacaggaaacagttaacacattgaccctt
ctgatggagtgagcctgggatgtctttaggagagaaagaaaatttctgta
tgttttaaaagttttttttgtaatgttttaaaattttatttaaaatgaaa
tttgtgaagtctgcaacccttataggtggaacaaacgatattgaactaaa
ccaggtaccctcaggagctcgtggtctcttaggctgtcatattgtattca
gaaggatgggtctagtttgggccatcattggggaagtagaggctccattt
ggttcttgcaaacttttaatatggccccatacagggttattgctcagggc
ccaagaagttgggagttgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42785563_42786760
seq2: B6Ng01-224F16.b_46_1223

seq1  GAATTCCTCTCACTCCAGGAACTCACAGTGGATGGTCTTCTGAGCTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCACTCCAGGAACTCACAGTGGATGGTCTTCTGAGCTTAAT  50

seq1  GACACCATAAATAAATGTCCCAATAACTCACTACATTTTTCATTACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATAAATAAATGTCCCAATAACTCACTACATTTTTCATTACAATC  100

seq1  ATCTACTGTCTTTACTTATGGCAGGGAAATTACAGTCGCTGGAAGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGTCTTTACTTATGGCAGGGAAATTACAGTCGCTGGAAGCAGGT  150

seq1  TGGGTCTATGAGATCCACTCCATCTCACTTTTTTTCTGGTCAATTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTATGAGATCCACTCCATCTCACTTTTTTTCTGGTCAATTTCTTC  200

seq1  TGAGGGTAACCCTTAACTTCCAGCTTGAAGGAGGCTTTCTAGTTGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAACCCTTAACTTCCAGCTTGAAGGAGGCTTTCTAGTTGCTGTA  250

seq1  TGAAAAGAGAAGGCTCTTGGTGGTGAGAGAAGGGCTACCATCTTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGAAGGCTCTTGGTGGTGAGAGAAGGGCTACCATCTTTCATTT  300

seq1  TACTGTTGTGACAAAGTTATAAATTCCAGTTTAGATTCAACCAGAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGTGACAAAGTTATAAATTCCAGTTTAGATTCAACCAGAATGTG  350

seq1  TTCTCGCAAAGAGACCTATTTAAGTTTAAAGATTATCCTGAGAAAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCAAAGAGACCTATTTAAGTTTAAAGATTATCCTGAGAAAGACAA  400

seq1  TATATCAAAACAAGTGATAGACTTAACTTTAGAGATATGGATTCCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAAACAAGTGATAGACTTAACTTTAGAGATATGGATTCCTTGCT  450

seq1  ATCAATGAGTATCCCAAGGTCTCGTGGTGTTTGGTTACAATTGTTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAGTATCCCAAGGTCTCGTGGTGTTTGGTTACAATTGTTTTAGA  500

seq1  ATTTTATCACAGGAGTCAATGTTTCCTCAGTAGCTCCTTGAAGCTGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCACAGGAGTCAATGTTTCCTCAGTAGCTCCTTGAAGCTGGAAC  550

seq1  ATCCAGAGCATACTCTGAAGCTGGCCAGTCCAGCTACTGGTGCTTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCATACTCTGAAGCTGGCCAGTCCAGCTACTGGTGCTTGTTCT  600

seq1  GGTCTCAGATCAGGTTCTAGCTACTTCTCCCCTCCTATCCTGTGTTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGATCAGGTTCTAGCTACTTCTCCCCTCCTATCCTGTGTTGGTC  650

seq1  AAAAGCAGATCTTTTTACACTCAATCTGAGCTGTCTGATAGGCCAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGATCTTTTTACACTCAATCTGAGCTGTCTGATAGGCCAGGATC  700

seq1  TTCCTACTACATGGACAATGCTCTGCTAATTCAAAGGATAAGACAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTACATGGACAATGCTCTGCTAATTCAAAGGATAAGACAAGTTC  750

seq1  TTACAAATCAGGTAGTTTTTTTCCAGGTACAAAACCCTTAAGCATCTCTT  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATCA-GTAGTTTTTTTCCAGGTACAAAACCCTTAAGCATCTCTT  799

seq1  ACTGGACATCACTAATCACAGGAGTTCCGTGAATGTTGTCTTTTTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACATCACTAATCACAGGAGTTCCGTGAATGTTGTCTTTTTTTTAA  849

seq1  ATATTTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCC  899

seq1  AAAAGTCCCCCATACCCTCCCTCCCACTCCCCTACCCACCCACTCCCCCT  950
      ||||||||||||||||   |||||||||||||||||||||||||||||| 
seq2  AAAAGTCCCCCATACC--TCCTCCCACTCCCCTACCCACCCACTCCCCC-  946

seq1  TTTTGGTCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCC  1000
      ||||||| ||||||||||||||||||||||||||| |||||||| |||||
seq2  TTTTGGT-CTGGCGTTCCCCTGTACTGGGGCATAT-AAGTTTGC-AGTCC  993

seq1  AATGGGACTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATACAT  1050
      ||| ||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  AAT-GGACTCTCTTTCCAGTGAT-GCCGACTAGG-CATC-TCTGATACAT  1039

seq1  A-TGCAGCTAGAGTCAAGAGC-TCTGGGGTACTGGTTAGTTCATAATGTT  1098
      | ||||||||||||||||||| |||||| ||||||||||| ||| ||| |
seq2  ATTGCAGCTAGAGTCAAGAGCTTCTGGGTTACTGGTTAGTCCAT-ATG-T  1087

seq1  GTTGCACCTACAGGGTT-GCAG-ATCTCTTTAGCTCCTTGGATACTTTCT  1146
      ||||||| ||||||||| |||| ||  |||||   |  ||||  ||| ||
seq2  GTTGCACTTACAGGGTTGGCAGAATTCCTTTAAGCCTCTGGAATCTTCCT  1137

seq1  CTAG-CTCCTCCATTGGGGGCCCTGAATGTTGTCTTTCAAACATCG-CTT  1194
       ||| ||| |         |  ||||  |||||| | ||||||||| |||
seq2  -TAGTCTCAT---------GGACTGA--GTTGTC-TGCAAACATCGCCTT  1174

seq1  CTCT  1198
      ||||
seq2  CTCT  1178


seq1: chr15_42913080_42914123
seq2: B6Ng01-224F16.g_68_1138 (reverse)

seq1  ACCC-ACTCCC-ACTTCTT-GGCCCTG-GC-ATTCCCCTGTACTGGGGCA  45
      |||| |||||| ||||||| ||||||| || ||  |||||||  ||| ||
seq2  ACCCAACTCCCAACTTCTTGGGCCCTGAGCAATAACCCTGTATGGGGCCA  50

seq1  TAT--AAAGTTTGCAAGA--CCAATGG-GCCTCT-CTT-CCCAATGATGG  88
      |||  |||||||||||||  | ||||| |||||| ||| |||||||||||
seq2  TATTAAAAGTTTGCAAGAACCAAATGGAGCCTCTACTTCCCCAATGATGG  100

seq1  CC--AACTA-AGCCAT-CTTCTG-ATAC-ATATG-CAGC--TAGAGA-CA  128
      ||  ||||| | |||| |||||| |||| ||||| ||||   ||||| ||
seq2  CCCAAACTAGACCCATCCTTCTGAATACAATATGACAGCCTAAGAGACCA  150

seq1  CGAGCT-CTGGGGGTA-CTGG-TTAGTTC-ATATCG-TTGTTCCACCTAT  173
      |||||| ||| ||||| |||| ||||||| |||||| |||||||||||||
seq2  CGAGCTCCTGAGGGTACCTGGTTTAGTTCAATATCGTTTGTTCCACCTAT  200

seq1  -AGGGTTGCAGACCTCACAAAATTCATTTTAAATAAAATTTTAAAACATT  222
       |||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AAGGGTTGCAGACTTCACAAATTTCATTTTAAATAAAATTTTAAAACATT  250

seq1  ACAAAAAAAACTTTTAAAAACATACAGAAATTTTCTTTCTCTCCTAAAGA  272
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAACTTTT-AAAACATACAGAAATTTTCTTTCTCTCCTAAAGA  299

seq1  CATCCCAGGCTCACTCCATCAGAAGGGTCAATGTGTTAACTGTTTCCTGT  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGGCTCACTCCATCAGAAGGGTCAATGTGTTAACTGTTTCCTGT  349

seq1  AGGTGTTTCAGGAAACCTCTTTGTAACACATAAATGTAATGGGTTAAACA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTCAGGAAACCTCTTTGTAACACATAAATGTAATGGGTTAAACA  399

seq1  CCATTTAAAGGCCAATGGGAAATGCAGTAGTTGGTTTAACCTTTGAAAAA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAGGCCAATGGGAAATGCAGTAGTTGGTTTAACCTTTGAAAAA  449

seq1  TTTATACTATATAATAGGTATATCAAAATTTACTAAGCATAGGCTTTTGC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTATATAATAGGTATATCAAAATTTACTAAGCATAGGCTTTTGC  499

seq1  TGTAAAAGTATGTGTTTAAAGTCCTTGTTCAAAAATGTAAAAACCTCCTT  522
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGTAAAAGTATGTGTTTAAAGTCCTTGTTCAGAAATGTAAGAACCTCCTT  549

seq1  TAGCCAACTTCCATGCTTCTTCATTACAGTGCCTCCTCAAAAATGCAATC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACTTCCATGCTTCTTCATTACAGTGCCTCCTCAAAAATGCAATC  599

seq1  CACCAAGTGAGCACTGCCAATATTGGTTTAAGTAAAATTACTGTCCAAGT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTGAGCACTGCCAATATTGGTTTAAGTAAAATTACTGTCCAAGT  649

seq1  GAAACTGTGGCCAAACACAGGCTGACAGGGCTGTCATTGGGCCACAAGGG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTGGCCAAACACAGGCTGACAGGGCTGTCATTGGGCCACAAGGG  699

seq1  CTTATCCTAGCCAAGAAACAGAAAAGCATGCTGGGCAGCCCCCTCGCCTG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTAGCCAAGAAACAGAAAAGCATGCTGGGCAGCCCCCTCGCCTG  749

seq1  TCCTCCCAACACCACACCATACAGTCTCTAAAGTAACAGTTTTCAAATTA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAACACCACACCATACAGTCTCTAAAGTAACAGTTTTCAAATTA  799

seq1  TACTCTAGTCTTGTTCATACCGAGCATTCCCCAAGAACCTGGTATGTGCC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTCTTGTTCATACCGAGCATTCCCCAAGAACCTGGTATGTGCC  849

seq1  GACGATGCTGCCAGACCCTAAGAACATGGTTCCTTAACACTCATTCCCCT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATGCTGCCAGACCCTAAGAACATGGTTCCTTAACACTCATTCCCCT  899

seq1  ATCCCAGGGATGCCAATGCCAAAGTGATGGGCCACAGCCACGTGGCACTA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGGATGCCAATGCCAAAGTGATGGGCCACAGCCACGTGGCACTA  949

seq1  ACAGTATCAAACAATAACAGAATACATAGGAGAAACGTGCATGGTGGCGT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCAAACAATAACAGAATACATAGGAGAAACGTGCATGGTGGCGT  999

seq1  CTATGCAGACTGAGATCAAGGGTCCATTGCTGTTCTGTCTTTAAGTTTTT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGACTGAGATCAAGGGTCCATTGCTGTTCTGTCTTTAAGTTTTT  1049

seq1  ATTTGTTTACATTTATGAATTC  1044
      ||||||||||||||||||||||
seq2  ATTTGTTTACATTTATGAATTC  1071


| Home | SequenceCutter | Blast | Download |