BAC Information

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BAC

Clone NameB6Ng01-224H20
Chromosome1 (Build37)15 (Build37)
Map Location 111,009,964 - 111,010,35169,197,819 - 69,198,327
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224H20.bB6Ng01-224H20.g
ACCGA038934GA038935
length1,000503
definitionB6Ng01-224H20.b B6Ng01-224H20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,009,964 - 111,010,351)(69,197,819 - 69,198,327)
sequence
gaattctcaacagaggaatcgttacaggccaagaaatgttcaacatcctt
agtcattacggaaatgcaactcaaaatgactcttagattctatcttattt
tttttggtttatttttttttattatgtattttcttcaattacatttccaa
tgctatcccaaaagtcccccaccccccccccactcccctacccacccatt
cccattttttggtcctggcattcctctgtactggggcgtataaagtttgc
ctgatcaatgggcctctctttccagtgatggccgactaggtcatcttttg
atacatatgcagctagagtcaagagctctggggtactggttagttcataa
tgttgttctactgatagggttgcagatctctttagctccttggatacttt
ctctagctcctccattgggggccctgtgatccatccaatagttgactgcg
agcatccacttctgtgtttgctaggccccagcctagtctcacaagggaca
gctatatcacggtccttgcaacaaaggcttgctagtgtatgcaatggtgt
catcgtttggaggctaattatgggaaggatccctaactcatcagaatagc
tacgattaaatgtgcactcgcacgtgtgcacgcacacacacacacacaca
cagagacacacacacatatacacataatcataaaataaacaaaagtgaat
ttggccctgaaacactcgatattgtatttttctactttgttttaaatccc
ttatctatcttattgatttgtatttttatttaatatataatatatgtctt
tattgattattttccggactttactactgcacagcaattttgaaatgaat
agaaatagtcttgtttgatgacaagtatgcttctactacatataattacc
tgaacatataatgggcatttattatattactagtttgaatgaataagaaa
ataatttctaatacattaataattttatttttatattaaatcttttagtg


tctacccactacaggatcatgagcagaaagcaatgatacttctatgctga
tcagtgtgttcgttaggctggagttgagatgccacctggacttccaagaa
tggagaagatatgagagcaagaagtgtgcaggagggttcccctagggaag
cctgaatagacgggtctatgaaactgcagagtataagacttggagaaatt
tatcttctgctaatttaggagaaaactgatataaaatcacagttacacag
ctatttctgatagaactaagaaatcagaatggtgtctaggattatgtagg
attatcctcaccaaattatttttatttatacaatctgtatagtagctata
aatatccatattttcacaaatgtgggaatgatatcttacaggagtaaatt
aaaactaatacattagtattctcctaaaattaaaattatatatttttcaa
aaattgaaaagggtgtgtgtgtttgtgtgtgtgtaagtgagagagggagg
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111009964_111010351
seq2: B6Ng01-224H20.b_146_628 (reverse)

seq1  ATCCATCCCATAATTAGCCTCTAAACAACGACACCATTGCATATACTAGC  50
      |||| |||||||||||||||| |||| | |||||||||||||| ||||||
seq2  ATCCTTCCCATAATTAGCCTCCAAACGATGACACCATTGCATACACTAGC  50

seq1  AAGTGTTTGTTGCAAGGACAGTGATATAGCTGTCTCTCGTGAGACTAGGC  100
      |||  |||||||||||||| |||||||||||||| || ||||||||||||
seq2  AAGCCTTTGTTGCAAGGACCGTGATATAGCTGTCCCTTGTGAGACTAGGC  100

seq1  CGGGGCCTACCAAACACAGAAGTGGATGCTCACAGTCAACTATTGGATGG  150
       |||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TGGGGCCTAGCAAACACAGAAGTGGATGCTCGCAGTCAACTATTGGATGG  150

seq1  ATCACAGGGCCCCCAATGGAGGAACTAGAGAAAGTATCCAAGGAGCTAAA  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAA  200

seq1  GAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACCTGTACCC  250
      ||||||||||||||| |  ||  |||||||||||||||||||| ||||||
seq2  GAGATCTGCAACCCTATCAGTAGAACAACATTATGAACTAACCAGTACCC  250

seq1  CTGAGCCCTTGACTCTAGCTGCATATGTATCAAAAGATGGCC-AGTTGGC  299
      | |||| |||||||||||||||||||||||||||||||| || ||| |||
seq2  CAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGACCTAGTCGGC  300

seq1  CATCACTGGAGAGAGAGGCCCATTGGTCAGGCAAACTTT-----------  338
      |||||||||| |||||||||||||| |||||||||||||           
seq2  CATCACTGGAAAGAGAGGCCCATTGATCAGGCAAACTTTATACGCCCCAG  350

seq1  --------------------------------------------------  338
                                                        
seq2  TACAGAGGAATGCCAGGACCAAAAAATGGGAATGGGTGGGTAGGGGAGTG  400

seq1  ------------------------ATAGCATTGGAAATGTAATTGAGAAA  364
                              ||||||||||||||||||||||  ||
seq2  GGGGGGGGGTGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAAGAA  450

seq1  AATA---AGTAAAAAAAAA------AAAAAAAA  388
      ||||   | ||||||||||      ||||||||
seq2  AATACATAATAAAAAAAAATAAACCAAAAAAAA  483


seq1: chr15_69197819_69198327
seq2: B6Ng01-224H20.g_66_574

seq1  GAATTCTCTACCCACTACAGGATCATGAGCAGAAAGCAATGATACTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCCACTACAGGATCATGAGCAGAAAGCAATGATACTTCTA  50

seq1  TGCTGATCAGTGTGTTCGTTAGGCTGGAGTTGAGATGCCACCTGGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCAGTGTGTTCGTTAGGCTGGAGTTGAGATGCCACCTGGACTTC  100

seq1  CAAGAATGGAGAAGATATGAGAGCAAGAAGTGTGCAGGAGGGTTCCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGAGAAGATATGAGAGCAAGAAGTGTGCAGGAGGGTTCCCCTA  150

seq1  GGGAAGCCTGAATAGACGGGTCTATGAAACTGCAGAGTATAAGACTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCTGAATAGACGGGTCTATGAAACTGCAGAGTATAAGACTTGGA  200

seq1  GAAATTTATCTTCTGCTAATTTAGGAGAAAACTGATATAAAATCACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATCTTCTGCTAATTTAGGAGAAAACTGATATAAAATCACAGTT  250

seq1  ACACAGCTATTTCTGATAGAACTAAGAAATCAGAATGGTGTCTAGGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTATTTCTGATAGAACTAAGAAATCAGAATGGTGTCTAGGATTA  300

seq1  TGTAGGATTATCCTCACCAAATTATTTTTATTTATACAATCTGTATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATTATCCTCACCAAATTATTTTTATTTATACAATCTGTATAGTA  350

seq1  GCTATAAATATCCATATTTTCACAAATGTGGGAATGATATCTTACAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAATATCCATATTTTCACAAATGTGGGAATGATATCTTACAGGAG  400

seq1  TAAATTAAAACTAATACATTAGTATTCTCCTAAAATTAAAATTATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAACTAATACATTAGTATTCTCCTAAAATTAAAATTATATATT  450

seq1  TTTCAAAAATTGAAAAGGGTGTGTGTGTTTGTGTGTGTGTAAGTGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATTGAAAAGGGTGTGTGTGTTTGTGTGTGTGTAAGTGAGAGA  500

seq1  GGGAGGAAA  509
      |||||||||
seq2  GGGAGGAAA  509


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