BAC Information

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BAC

Clone NameB6Ng01-225B07
Chromosome15 (Build37)
Map Location 21,099,275 - 21,100,477
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225B07.bB6Ng01-225B07.g
ACCGA039365GA039366
length1,1941,206
definitionB6Ng01-225B07.b B6Ng01-225B07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttaaggaatgatgcaatgaaaatggaagtgaaaggcaggag
acgacatgaaacatgatttattgtgtaaaatcatcactgcagaaggaagg
aataatgacagagaatgagagtagaagacaatttagaagtaaattctatt
aatgtagtaattcaggtgagagaataatgatttgccctggtttcagaatg
agcaatcggagggatagactctcgacgcttccaaatgaagtcaatagata
tagctgatggagtcattatttcatgagcagtaatgggaagaaaatcaata
aatgttaaggacaattgaaagaaagttcagaattattcaatgattttagc
aagtcaaaagaaagataaaatgatgttaggaagagcacataattaaagga
gaaataataaagcttaccatacattactttataaagccagtgaacataat
ggaaaaatagattgggatagtaataagatatttattttcctcactgtagt
atgtaattagtttttctaagaatatagatcaatgggtctcaatttactta
atactgagatcttataattctgagttctttatgctgtggttacttccaat
gggaaaaatattttcattgctatttaataactataattttctacttttat
gaatcataatgtaaatacctgacatttagaatatctgatatgtaacccca
tcagacatgcaaagaattacttatacataatttaaattattgtagcaatt
aaatcataacatagtgaatattcatacataaacaccttttatcaacaggt
tgtcatttattgatttatttattcactcatatttaaggaatttaagcagg
attcatgtgtgtcactgttacaaagcaaataaaggaaggaagggtttaat
atggtctctgttgaaattacagctcatagtggcagagtcaatgtacaatg
tgagaagttccagctgttgggcaggaatatgacagggagtcacaacatca
aaatccaagtggagagggagatcgctttagcctcccataggatctgtgtt
ccagcccatgagcaaaggtggcacaaccactgagtgttgcccagagcatg
tcttcttacatgatcaaattctgtaggtgatacagccagatcgccactta
attatgatgcctatgatacacgattggatgtccaatgaggtaaa

gaattcctgatctttccagaatttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ctaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatctttgaaggtctgatagaactctgcactaaacccgtctggtc
ctgggctttttttggctgggagactattaataactgcttctatttcttta
ggggatatgggactgtttagaaggtcaacttgatcctgattcaactttgg
tacctggtatctgtccagaaatttgtccatttcgtctaggttttccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcatttctgattttgttaattag
gattttgtccctgtgccctttagtgagtctagctaagggtttatctatct
tgttgattttctcaaagaaccaactcctcgtttggttaattctttgaata
gttcttcttgtttccacttggttgatttcacccctgagtttgattatttc
ctgccgtctactcctcttgggtgaatttgcttccttttttttctagagct
tttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttctt
gaaggcactcatagctattgagttccctcttagaaatgctttcattgtgt
cccaagtttgggtacgttgtggctttcatttcataaactctaaaaagtct
tatttcttcctttattcctccttgacaaggtattcattggagaagaagtg
ttgttcagttccaatgtgaatgtgcctttcgttattattcgttactgaga
tcgatccttaagggtcaatgtgtatctgatataaggaatacactgagtgg
gtccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21099275_21100477
seq2: B6Ng01-225B07.b_45_1238

seq1  GAATTCCATTTAAGGAATGATGCAATGAAAATGGAAGTGAAAGGCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAGGAATGATGCAATGAAAATGGAAGTGAAAGGCAGGAG  50

seq1  ACGACATGAAACATGATTTATTGTGTAAAATCATCACTGCAGAAGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATGAAACATGATTTATTGTGTAAAATCATCACTGCAGAAGGAAGG  100

seq1  AATAATGACAGAGAATGAGAGTAGAAGACAATTTAGAAGTAAATTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACAGAGAATGAGAGTAGAAGACAATTTAGAAGTAAATTCTATT  150

seq1  AATGTAGTAATTCAGGTGAGAGAATAATGATTTGCCCTGGTTTCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAATTCAGGTGAGAGAATAATGATTTGCCCTGGTTTCAGAATG  200

seq1  AGCAATCGGAGGGATAGACTCTCGACGCTTCCAAATGAAGTCAATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCGGAGGGATAGACTCTCGACGCTTCCAAATGAAGTCAATAGATA  250

seq1  TAGCTGATGGAGTCATTATTTCATGAGCAGTAATGGGAAGAAAATCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGGAGTCATTATTTCATGAGCAGTAATGGGAAGAAAATCAATA  300

seq1  AATGTTAAGGACAATTGAAAGAAAGTTCAGAATTATTCAATGATTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAGGACAATTGAAAGAAAGTTCAGAATTATTCAATGATTTTAGC  350

seq1  AAGTCAAAAGAAAGATAAAATGATGTTAGGAAGAGCACATAATTAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAAGAAAGATAAAATGATGTTAGGAAGAGCACATAATTAAAGGA  400

seq1  GAAATAATAAAGCTTACCATACATTACTTTATAAAGCCAGTGAACATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATAAAGCTTACCATACATTACTTTATAAAGCCAGTGAACATAAT  450

seq1  GGAAAAATAGATTGGGATAGTAATAAGATATTTATTTTCCTCACTGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATAGATTGGGATAGTAATAAGATATTTATTTTCCTCACTGTAGT  500

seq1  ATGTAATTAGTTTTTCTAAGAATATAGATCAATGGGTCTCAATTTACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTAGTTTTTCTAAGAATATAGATCAATGGGTCTCAATTTACTTA  550

seq1  ATACTGAGATCTTATAATTCTGAGTTCTTTATGCTGTGGTTACTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGATCTTATAATTCTGAGTTCTTTATGCTGTGGTTACTTCCAAT  600

seq1  GGGAAAAATATTTTCATTGCTATTTAATAACTATAATTTTCTACTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATATTTTCATTGCTATTTAATAACTATAATTTTCTACTTTTAT  650

seq1  GAATCATAATGTAAATACCTGACATTTAGAATATCTGATATGTAACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAATGTAAATACCTGACATTTAGAATATCTGATATGTAACCCCA  700

seq1  TCAGACATGCAAAGAATTACTTATACATAATTTAAATTATTGTAGCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGCAAAGAATTACTTATACATAATTTAAATTATTGTAGCAATT  750

seq1  AAATCATAACATAGTGAATATTCATACATAAACACCTTTTATCAACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAACATAGTGAATATTCATACATAAACACCTTTTATCAACAGGT  800

seq1  TGTCATTTATTGATTTATTTATTCACTCATATTTAAGGAATTTAAGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTATTGATTTATTTATTCACTCATATTTAAGGAATTTAAGCAGG  850

seq1  ATTCATGTGTGTCACTGTTACAAAGCAAAT-AAGGAAGGAAGGGTTTAAT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTCATGTGTGTCACTGTTACAAAGCAAATAAAGGAAGGAAGGGTTTAAT  900

seq1  ATGGTCTCTGTTGAAATTACAGCTCATAGTGGCAGAGTCAATGTACAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTGTTGAAATTACAGCTCATAGTGGCAGAGTCAATGTACAATG  950

seq1  TGAGAAGTTCCAGCTGTTGGGCAGGAATATGACAGGGAGTCACAAACATC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAGAAGTTCCAGCTGTTGGGCAGGAATATGACAGGGAGTCAC-AACATC  999

seq1  AAAATCCAAGT-GAGAGGGAGATCGCTTTAGCCTTCCCATTAGGATCTGT  1048
      ||||||||||| ||||||||||||||||||||| ||||| ||||||||||
seq2  AAAATCCAAGTGGAGAGGGAGATCGCTTTAGCC-TCCCA-TAGGATCTGT  1047

seq1  GTTCCAGCCCATGAAGCAAAGGTGGCACCAACACTGAGTGTTGCCCAGAG  1098
      ||||||||||||| |||||||||||||| | |||||||||||||||||||
seq2  GTTCCAGCCCATG-AGCAAAGGTGGCACAACCACTGAGTGTTGCCCAGAG  1096

seq1  CAATGTTCCTTCCTACATGATTCAAAATCCTGTTAAGGTGATACAG-CAG  1147
      | ||||  |||| ||||||||   |||| ||||  ||||||||||| |||
seq2  C-ATGT--CTTCTTACATGAT--CAAATTCTGT--AGGTGATACAGCCAG  1139

seq1  ATTCGCCACTATATTATGGATG-CTATGGATACACGTTTGGATGT-CAAT  1195
      | ||||||||  ||||| |||| |||| |||||||| |||||||| ||||
seq2  A-TCGCCACTTAATTAT-GATGCCTAT-GATACACGATTGGATGTCCAAT  1186

seq1  GAAGTAAA  1203
      || |||||
seq2  GAGGTAAA  1194


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