BAC Information

Click to search

BAC

Clone NameB6Ng01-225H06
Chromosome15 (Build37)
Map Location 83,119,399 - 83,302,489
singlet/doubletdoublet
Overlap geneLOC100042119, Arfgap3, Pacsin2, LOC414359
Upstream geneSept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt
Downstream geneTtll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H06.bB6Ng01-225H06.g
ACCGA039643GA039644
length890500
definitionB6Ng01-225H06.b B6Ng01-225H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,119,399 - 83,120,288)(83,301,984 - 83,302,489)
sequence
gaattcacaccactcacctgcatccccgtgggctgctctgagccaggtat
tctcaaatcaagctcggagacataataccaaaatcacaaggagcgtgcta
atgtgatttatgaacagaaacagtacaaaaactcgtcagctgagattgtg
gctcctctggacctcagaagtcacactggccagaaaggggcaggagtcag
ggtgggagacatggctcagttggtggaacacttgtttagcgtgcaggaga
ccttgggtcccatctctggcagggcttaaaaccatgtggtgacatatcct
gacaatagacctgaggaggtggaagcaggaggatgaggggttcaaagcca
tcctcaggtacagcctgggatacacaagacaagagattcaaaacgaaagt
gggtggacctgttaactgtaatcccagatactcaggaagctgaggcagga
ggatcacaaattcaaagccagaatgggcaacataatctaaccccaactaa
aaatggatgtgccttgttgcatagaaggttgctttattttgtgaaagggt
ctcactatgtagccttggctagcctgagactcagtatatagaccaggttg
gcctcaaactcacagagatccatctgcctcccaagtgctacaattaaaag
cttatacttcacactcagttacactgagtgtttattgaagtttaggtaat
gtgttttgtttttaatttctttagatttatttttttattctgtgtatttg
tgaatgcctctttctctgtatgtgtgcatatatattgcagtgcatatata
cctagttctcttgagggccaggagagggtgtccagtcctctggaacttgt
gaagagaaccaaccagactgtgtggtgtggttaggttttg
ttaggggctatgcaacccggtcacaagcaacatgaacagacagttcccaa
aggatcatttggatggctgtgctggggcaggagactttggtcatgcttag
caatgggataggaggctcttagagagtagggcagagctggctaagttcag
cctcccttttgtggggcttggataaggaatgtcagttgcgttgtgggaat
ttctgactgtgggggctgtcgtgttagtgcctggttcccaggcggtcctt
ggcagggtctggcactgggtagttagctgtctgggcacactgctggaatg
ctctgacctgtgattagccaggccaggcttggctctctctgctgcccaca
tgatactcccatcagccttaatgagtgcacgtgctgcaatctgaaactgg
agccagggctggaaccagttgcacagaaaatagaagtgtcacaacaggaa
gggtgcgtccagtctgccaagggacagctgggttcggggatgggggtggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83119399_83120288
seq2: B6Ng01-225H06.b_44_933

seq1  GAATTCACACCACTCACCTGCATCCCCGTGGGCTGCTCTGAGCCAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCACTCACCTGCATCCCCGTGGGCTGCTCTGAGCCAGGTAT  50

seq1  TCTCAAATCAAGCTCGGAGACATAATACCAAAATCACAAGGAGCGTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATCAAGCTCGGAGACATAATACCAAAATCACAAGGAGCGTGCTA  100

seq1  ATGTGATTTATGAACAGAAACAGTACAAAAACTCGTCAGCTGAGATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTATGAACAGAAACAGTACAAAAACTCGTCAGCTGAGATTGTG  150

seq1  GCTCCTCTGGACCTCAGAAGTCACACTGGCCAGAAAGGGGCAGGAGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGGACCTCAGAAGTCACACTGGCCAGAAAGGGGCAGGAGTCAG  200

seq1  GGTGGGAGACATGGCTCAGTTGGTGGAACACTTGTTTAGCGTGCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGACATGGCTCAGTTGGTGGAACACTTGTTTAGCGTGCAGGAGA  250

seq1  CCTTGGGTCCCATCTCTGGCAGGGCTTAAAACCATGTGGTGACATATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTCCCATCTCTGGCAGGGCTTAAAACCATGTGGTGACATATCCT  300

seq1  GACAATAGACCTGAGGAGGTGGAAGCAGGAGGATGAGGGGTTCAAAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGACCTGAGGAGGTGGAAGCAGGAGGATGAGGGGTTCAAAGCCA  350

seq1  TCCTCAGGTACAGCCTGGGATACACAAGACAAGAGATTCAAAACGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGTACAGCCTGGGATACACAAGACAAGAGATTCAAAACGAAAGT  400

seq1  GGGTGGACCTGTTAACTGTAATCCCAGATACTCAGGAAGCTGAGGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGACCTGTTAACTGTAATCCCAGATACTCAGGAAGCTGAGGCAGGA  450

seq1  GGATCACAAATTCAAAGCCAGAATGGGCAACATAATCTAACCCCAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAAATTCAAAGCCAGAATGGGCAACATAATCTAACCCCAACTAA  500

seq1  AAATGGATGTGCCTTGTTGCATAGAAGGTTGCTTTATTTTGTGAAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGTGCCTTGTTGCATAGAAGGTTGCTTTATTTTGTGAAAGGGT  550

seq1  CTCACTATGTAGCCTTGGCTAGCCTGAGACTCAGTATATAGACCAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGCCTTGGCTAGCCTGAGACTCAGTATATAGACCAGGTTG  600

seq1  GCCTCAAACTCACAGAGATCCATCTGCCTCCCAAGTGCTACAATTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACTCACAGAGATCCATCTGCCTCCCAAGTGCTACAATTAAAAG  650

seq1  CTTATACTTCACACTCAGTTACACTGAGTGTTTATTGAAGTTTAGGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTTCACACTCAGTTACACTGAGTGTTTATTGAAGTTTAGGTAAT  700

seq1  GTGTTTTGTTTTTAATTTCTTTAGATTTATTTTTTTATTCTGTGTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTTTTTAATTTCTTTAGATTTATTTTTTTATTCTGTGTATTTG  750

seq1  TGAATGCCTCTTTCTCTGTATGTGTGCATATATATTGCAGTGCATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCTCTTTCTCTGTATGTGTGCATATATATTGCAGTGCATATATA  800

seq1  CCTAGTTCTCTTGAGGGCCAGGAGAGGGTGTCCAGTCCTCTGGAACTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCTCTTGAGGGCCAGGAGAGGGTGTCCAGTCCTCTGGAACTTGT  850

seq1  GAAGAGAACCAACCAGACTGTGTGGTGTGGTTAGGTTTTG  890
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAACCAACCAGACTGTGTGGTGTGGTTAGGTTTTG  890

seq1: chr15_83301984_83302489
seq2: B6Ng01-225H06.g_65_570 (reverse)

seq1  CCCACCCCCATCCCCGAACCCAGCTGTCCCTTGGCAGACTGGACGCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCATCCCCGAACCCAGCTGTCCCTTGGCAGACTGGACGCACCC  50

seq1  TTCCTGTTGTGACACTTCTATTTTCTGTGCAACTGGTTCCAGCCCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGTGACACTTCTATTTTCTGTGCAACTGGTTCCAGCCCTGGCT  100

seq1  CCAGTTTCAGATTGCAGCACGTGCACTCATTAAGGCTGATGGGAGTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCAGATTGCAGCACGTGCACTCATTAAGGCTGATGGGAGTATCA  150

seq1  TGTGGGCAGCAGAGAGAGCCAAGCCTGGCCTGGCTAATCACAGGTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGCAGAGAGAGCCAAGCCTGGCCTGGCTAATCACAGGTCAGAG  200

seq1  CATTCCAGCAGTGTGCCCAGACAGCTAACTACCCAGTGCCAGACCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGCAGTGTGCCCAGACAGCTAACTACCCAGTGCCAGACCCTGCC  250

seq1  AAGGACCGCCTGGGAACCAGGCACTAACACGACAGCCCCCACAGTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCGCCTGGGAACCAGGCACTAACACGACAGCCCCCACAGTCAGAA  300

seq1  ATTCCCACAACGCAACTGACATTCCTTATCCAAGCCCCACAAAAGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACAACGCAACTGACATTCCTTATCCAAGCCCCACAAAAGGGAGG  350

seq1  CTGAACTTAGCCAGCTCTGCCCTACTCTCTAAGAGCCTCCTATCCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTAGCCAGCTCTGCCCTACTCTCTAAGAGCCTCCTATCCCATTG  400

seq1  CTAAGCATGACCAAAGTCTCCTGCCCCAGCACAGCCATCCAAATGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATGACCAAAGTCTCCTGCCCCAGCACAGCCATCCAAATGATCCT  450

seq1  TTGGGAACTGTCTGTTCATGTTGCTTGTGACCGGGTTGCATAGCCCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACTGTCTGTTCATGTTGCTTGTGACCGGGTTGCATAGCCCCTAA  500

seq1  GAATTC  506
      ||||||
seq2  GAATTC  506