BAC Information

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BAC

Clone NameB6Ng01-226A16
Chromosome15 (Build37)
Map Location 83,374,818 - 83,531,008
singlet/doubletdoublet
Overlap geneBik, Mcat, Tspo, Ttll12, Scube1
Upstream gene9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1
Downstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226A16.bB6Ng01-226A16.g
ACCGA040082GA040083
length873408
definitionB6Ng01-226A16.b B6Ng01-226A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,374,818 - 83,375,680)(83,530,595 - 83,531,008)
sequence
gaattcactgtacctcaggagcattactggctaagtgcccctgaggcttg
gctggcccttcttctcttgacccctgctcccttcctctctgcaggctggt
cctgtggccatcagtggggggagtgctggccacacccctgtctgtgaagc
cttgaggcacaggatctactggactagagtcctttggggtggagagttca
attaagtggtgtttgcaggcaagttcaataaaatgtttccagccagtctc
cccttaggtcgtcctctgtggggctgttgcaatattggatgtagatggtg
gaaggaattgaaagtgacctctgcccccagtcccattcaccatgcctgca
cccaagggccataagaatgccccccagagcttcccatcttcctgagtttc
tctgtatagccctggctgtcctggaactcactctgcagaccaggctggcc
ttgagtgcagaaatctgcctgcctctgctctgtcgtgcctagctccactg
tccctttctgcctgtcacctgatggggcagtctgtccatctcctgtatgg
gcaggggcagctctccagaagagctgtggcgttgggctgtgctacacaag
gaacaccaagggaggagggccaggcctgccaccactaagctctggacctc
ccccaggccaggcccattatcttttctagatcaactgagacctctacctg
ggaactttggttttttctatctgccccatttcccatcagacagcaaaaca
gtgtccctcccctgtgtgactatcatggcttgtgaccactttctctggtc
tcccagatgccctcattgtgtcctttgaaattgtcccaaactttcccagt
tctgggttaaggtgcttgttctg
ctaaaagggccgatcagaccctcgtggtgccagctggtttctctgtacta
ggtagaagggttcaatatcccgactgcttgggcctctccttcctagtggc
gtgtcaggctgagagctcctgtctggttttgtttaacgcgtgttggggct
cagatgagctcattatgggaaacagatctgtgaacatgtaattacacccc
aaagaaatgccaaaacagaggtctggacaagagttagtaaagaccagaag
ggcctgtgaaaagctacccctggctggggtgaggcttggggggggggtgg
aagcagaattgccagggcttcaaagaggaagctctcagcggggctcacgc
tctcggagggggaagatgttggtaggactaggcacagtgagtgtagggct
gcaggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83374818_83375680
seq2: B6Ng01-226A16.b_45_917

seq1  GAATTCACTGTACCTCAGGAGCATTACTGGCTAAGTGCCCCTGAGGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTACCTCAGGAGCATTACTGGCTAAGTGCCCCTGAGGCTTG  50

seq1  GCTGGCCCTTCTTCTCTTGACCCCTGCTCCCTTCCTCTCTGCAGGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTTCTTCTCTTGACCCCTGCTCCCTTCCTCTCTGCAGGCTGGT  100

seq1  CCTGTGGCCATCAGTGGGGGGAGTGCTGGCCACACCCCTGTCTGTGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCCATCAGTGGGGGGAGTGCTGGCCACACCCCTGTCTGTGAAGC  150

seq1  CTTGAGGCACAGGATCTACTGGACTAGAGTCCTTTGGGGTGGAGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCACAGGATCTACTGGACTAGAGTCCTTTGGGGTGGAGAGTTCA  200

seq1  ATTAAGTGGTGTTTGCAGGCAAGTTCAATAAAATGTTTCCAGCCAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGGTGTTTGCAGGCAAGTTCAATAAAATGTTTCCAGCCAGTCTC  250

seq1  CCCTTAGGTCGTCCTCTGTGGGGCTGTTGCAATATTGGATGTAGATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGGTCGTCCTCTGTGGGGCTGTTGCAATATTGGATGTAGATGGTG  300

seq1  GAAGGAATTGAAAGTGACCTCTGCCCCCAGTCCCATTCACCATGCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATTGAAAGTGACCTCTGCCCCCAGTCCCATTCACCATGCCTGCA  350

seq1  CCCAAGGGCCATAAGAATGCCCCCCAGAGCTTCCCATCTTCCTGAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGCCATAAGAATGCCCCCCAGAGCTTCCCATCTTCCTGAGTTTC  400

seq1  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGCAGACCAGGCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGCAGACCAGGCTGGCC  450

seq1  TTGAGTGCAGAAATCTGCCTGCCTCTGCTCTGTCGTGCCTAGCTCCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCAGAAATCTGCCTGCCTCTGCTCTGTCGTGCCTAGCTCCACTG  500

seq1  TCCCTTTCTGCCTGTCACCTGATGGGGCAGTCTGTCCATCTCCTGTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTGCCTGTCACCTGATGGGGCAGTCTGTCCATCTCCTGTATGG  550

seq1  GCAGGGGCAGCTCTCCAGAAGAGCTGTGGCGTTGGGCTGTGCTACACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCAGCTCTCCAGAAGAGCTGTGGCGTTGGGCTGTGCTACACAAG  600

seq1  GAACACCAAGGGAGGAGGGCCAGGCCTGCCACCACTAAGCTCTGGACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAAGGGAGGAGGGCCAGGCCTGCCACCACTAAGCTCTGGACCTC  650

seq1  CCCCAGGCCAGGCCCATTATC-TTTCTAGATCAACTGAGACCTCTACCT-  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CCCCAGGCCAGGCCCATTATCTTTTCTAGATCAACTGAGACCTCTACCTG  700

seq1  GGAACTTTGG-TTTTTCTATCTGCCC--ATTCCCATCAGACAGCAAAACA  745
      |||||||||| |||||||||||||||   |||||||||||||||||||||
seq2  GGAACTTTGGTTTTTTCTATCTGCCCCATTTCCCATCAGACAGCAAAACA  750

seq1  GTGTCCCT-CCCTGTGTGACTATCAGTGGC-TGTGACCACTTTCTCTGGT  793
      |||||||| |||||||||||||||| |||| |||||||||||||||||||
seq2  GTGTCCCTCCCCTGTGTGACTATCA-TGGCTTGTGACCACTTTCTCTGGT  799

seq1  CTCCCAGATGCCCTCATTGTGTCCTT--GAATTGTCCCAAAC-TTCCCAG  840
      ||||||||||||||||||||||||||   ||||||||||||| |||||||
seq2  CTCCCAGATGCCCTCATTGTGTCCTTTGAAATTGTCCCAAACTTTCCCAG  849

seq1  TTCTGGG-TAAGGTGCTTGTTCTG  863
      ||||||| ||||||||||||||||
seq2  TTCTGGGTTAAGGTGCTTGTTCTG  873

seq1: chr15_83530595_83531008
seq2: B6Ng01-226A16.g_68_481 (reverse)

seq1  CAGCCTGCAGCCCTACACACACTGTGCCTAGACCTACCAACATCTTCCCC  50
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CAGCCTGCAGCCCTACACTCACTGTGCCTAGTCCTACCAACATCTTCCCC  50

seq1  CTCCGAGAGCGTGAGCCCCGCTGAGAGCTTCCTCTTTGAAGCCCTGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGAGCGTGAGCCCCGCTGAGAGCTTCCTCTTTGAAGCCCTGGCAA  100

seq1  TTCTGCTTCCACCCCCCCCCCAAGCCTCACCCCAGCCAGGGGTAGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCCACCCCCCCCCCAAGCCTCACCCCAGCCAGGGGTAGCTTTT  150

seq1  CACAGGCCCTTCTGGTCTTTACTAACTCTTGTCCAGACCTCTGTTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCCTTCTGGTCTTTACTAACTCTTGTCCAGACCTCTGTTTTGGC  200

seq1  ATTTCTTTGGGGTGTAATTACATGTTCACAGATCTGTTTCCCATAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTGGGGTGTAATTACATGTTCACAGATCTGTTTCCCATAATGAG  250

seq1  CTCATCTGAGCCCCAACACGCGTTAAACAAAACCAGACAGGAGCTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGAGCCCCAACACGCGTTAAACAAAACCAGACAGGAGCTCTCAG  300

seq1  CCTGACACGCCACTAGGAAGGAGAGGCCCAAGCAGTCGGGATATTGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACGCCACTAGGAAGGAGAGGCCCAAGCAGTCGGGATATTGAACC  350

seq1  CTTCTACCTAGTACAGAGAAACCAGCTGGCACCACGAGGGTCTGATCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTAGTACAGAGAAACCAGCTGGCACCACGAGGGTCTGATCGGC  400

seq1  CCTTTTAGGAATTC  414
      ||||||||||||||
seq2  CCTTTTAGGAATTC  414