BAC Information

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BAC

Clone NameB6Ng01-226E13
Chromosome15 (Build37)
Map Location 12,645,938 - 12,736,743
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109
Downstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E13.bB6Ng01-226E13.g
ACCGA040264GA040265
length1,1611,179
definitionB6Ng01-226E13.b B6Ng01-226E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,645,938 - 12,647,115)(12,735,563 - 12,736,743)
sequence
gaattcctcttcagggaggatccatctgccatcaagagctcctgttccag
ttaccctgtggaagagaaatcattgttgtcatgttcgggtcacataaacc
accctgagactcggtggtggcgtggtcaccacacctattgataccctaac
acaacagagtagggactgtttactgatttaactcgggtaggagttgccca
aatgtcccaacatggagaagtgcatttattaaataagcaatgcgggtgga
gtatacatgtgcccatctgtgtgtacacacatgtttgctagcatgtggag
gccacgggttgacgttgggtgtttcctaactcattctccaccttagtttt
tgagacaaggtctctcgttgcacctgcttcagatagactggctgatcagt
gggtccttggtgtccccacctctgctcccagtcctaggaatacatgtatg
ccttcacagtgagcttttaatagtcctgagatagcaagacaggtcctcat
tcttgcccagtgagcattttatacacagaggcatcttaccagcccttaaa
tgagtatttgttgaatgagaacagtccacattttacgagtaggactcaaa
tcccaggaaacaaaacttcacagaaattcaccaccatgcactcatgtatg
tgtgcacatgcacacacacacacatgagtgcacgtacacatgggtcctgg
ctactcctactctggctagctccgattcctaggacagcagagcccatcct
agaaactgtcctttcaaggctccgctacccggcatgggtatcacacacca
caaataccgaaaaagaaaattggaagagaaaagaaaaagccatccagaaa
aatagtccagatttctcatgatctcacccatgagtcagatcggcatttgg
gataagtcaccagcaccgaccagaacagtttgtctgcaggatgcctgcct
gccagtttccacagcagagcagcacacgttttaaattggcttaaaaggac
aaaccggggcacttgtttattttttttctctcctaaaaaaaaaaaatcaa
aggtgaatggattcctgcctaaaaatagaccctggaatgaacgatattct
tttaaacgcgagtgcaagtgtttgcatcgggggcaagtggaacgtctcac
aagacggtctt
gaattccaggtgcttgatgaacatgtccttgtaggcagagagcacattac
tcctgtaattcggctatcaggctgcatggctacctcggtggtggacgagg
gagttgcaggccccgaagaggaaagaagcaatccttactcctgccagtct
caagatgagttttgggagtttggacatgtctcaacctcaccgttgtccca
ggcctgttccccaagtcacacctctcacttgccccacacaccagctttct
ttctctgtttgatgacataagaaaggtcacttcagcgactgggccttacc
tttcagttctgatcaatagccaatagccttgacaatagcctgtgatgttt
aggggactgtctatggaacccctttgccaacccagtaacatttttaatct
tgtacgtacatggtcaaggatggttggatcttttgtgatctgacatgaat
aagacctgaagagaatcatgttccaaagaggaaagcataacctttgacat
cattttccaagaactgtgtctatgaagtttagatccctaaagttaccctg
cgttgggtgagcattgctgaccactgaagcagcgacgtttcttccccacc
tctggttctttccatccacttagaagcacagctatagccctgcgctgcct
ctctattccttcctgggtcaaagagtaaatgaaggaacatgggatctttt
cttctagaaggatttgttctgctgtcttcatcctccgatgcaaagttttg
aaagtaggcctatgatggtttgtctatccttggaccagggagtggcacca
tctggaggtgtggccttgttggaataggtgtgacctggttggaatgggtg
tgtcactgtgggtgtgggtataagatcctcaccctagttgcctggagtca
atcttcccactagcagcctttggatgaagatgtagaactctcagttctgc
ctgcgccatgacagccctggaatgctgccatgcttcccaccttgatgata
atgggactgaacctttggaacctgtgaacctgtaagccagccccataaat
gttgtttttaataagacctgacttgttcatggtgtctgttcaattcagta
agcctacctagacagggccctaaagagatagctaccgggtgcatggatga
accaactccaccttaaaaagctgtgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12645938_12647115
seq2: B6Ng01-226E13.b_46_1206

seq1  GAATTCCTCTTCAGGGAGGATCCATCTGCCATCAAGAGCTCCTGTTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAGGGAGGATCCATCTGCCATCAAGAGCTCCTGTTCCAG  50

seq1  TTACCCTGTGGAAGAGAAATCATTGTTGTCATGTTCGGGTCACATAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGTGGAAGAGAAATCATTGTTGTCATGTTCGGGTCACATAAACC  100

seq1  ACCCTGAGACTCGGTGGTGGCGTGGTCACCACACCTATTGATACCCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGACTCGGTGGTGGCGTGGTCACCACACCTATTGATACCCTAAC  150

seq1  ACAACAGAGTAGGGACTGTTTACTGATTTAACTCGGGTAGGAGTTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGTAGGGACTGTTTACTGATTTAACTCGGGTAGGAGTTGCCCA  200

seq1  AATGTCCCAACATGGAGAAGTGCATTTATTAAATAAGCAATGCGGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCAACATGGAGAAGTGCATTTATTAAATAAGCAATGCGGGTGGA  250

seq1  GTATACATGTGCCCATCTGTGTGTACACACATGTTTGCTAGCATGTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGTGCCCATCTGTGTGTACACACATGTTTGCTAGCATGTGGAG  300

seq1  GCCACGGGTTGACGTTGGGTGTTTCCTAACTCATTCTCCACCTTAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGGTTGACGTTGGGTGTTTCCTAACTCATTCTCCACCTTAGTTTT  350

seq1  TGAGACAAGGTCTCTCGTTGCACCTGCTTCAGATAGACTGGCTGATCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGGTCTCTCGTTGCACCTGCTTCAGATAGACTGGCTGATCAGT  400

seq1  GGGTCCTTGGTGTCCCCACCTCTGCTCCCAGTCCTAGGAATACATGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTGGTGTCCCCACCTCTGCTCCCAGTCCTAGGAATACATGTATG  450

seq1  CCTTCACAGTGAGCTTTTAATAGTCCTGAGATAGCAAGACAGGTCCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGTGAGCTTTTAATAGTCCTGAGATAGCAAGACAGGTCCTCAT  500

seq1  TCTTGCCCAGTGAGCATTTTATACACAGAGGCATCTTACCAGCCCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCAGTGAGCATTTTATACACAGAGGCATCTTACCAGCCCTTAAA  550

seq1  TGAGTATTTGTTGAATGAGAACAGTCCACATTTTACGAGTAGGACTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTTGTTGAATGAGAACAGTCCACATTTTACGAGTAGGACTCAAA  600

seq1  TCCCAGGAAACAAAACTTCACAGAAATTCACCACCATGCACTCATGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAAACAAAACTTCACAGAAATTCACCACCATGCACTCATGTATG  650

seq1  TGTGCACATGCACACACACACACATGAGTGCACGTACACATGGGTCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATGCACACACACACACATGAGTGCACGTACACATGGGTCCTGG  700

seq1  CTACTCCTACTCTGGCTAGCTCCGATTCCTAGGACAGCAGAGCCCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTACTCTGGCTAGCTCCGATTCCTAGGACAGCAGAGCCCATCCT  750

seq1  AGAAACTGTCCTTTCAAGGCTCCGCTACCCGGCATGGGTATCACACACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGTCCTTTCAAGGCTCCGCTACCCGGCATGGGTATCACACACCA  800

seq1  CAAATACCGAAAAAGAAAATTGGAAGAGAAAAGAAAAAGCCATCCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCGAAAAAGAAAATTGGAAGAGAAAAGAAAAAGCCATCCAGAAA  850

seq1  AATAGTCCAGATTTCTCATGATCTCACCCATGAGTCAGATCGGCATTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCAGATTTCTCATGATCTCACCCATGAGTCAGATCGGCATTTGG  900

seq1  GATAAGTCACCAGCACCGACCAGAACAGTTTGTCTGCAGGATGCCTGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTCACCAGCACCGACCAGAACAGTTTGTCTGCAGGATGCCTGCCT  950

seq1  GCCAGTTTCCACAGCAGAGCAGGCACACGTTTTAAATTGGCTTAAAAGGA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCAGTTTCCACAGCAGAGCA-GCACACGTTTTAAATTGGCTTAAAAGGA  999

seq1  CAAACCGGGGCACTTGTTTATTTTTTTTCTTCTCCTTAAAAAAAAAAAAT  1050
      ||||||||||||||||||||||||||||| ||||||  ||||||||||| 
seq2  CAAACCGGGGCACTTGTTTATTTTTTTTC-TCTCCT--AAAAAAAAAAAA  1046

seq1  TCCAAGGTGAATGAATTTCTTGCTTAAAAATAGACCCCTTGGAAATGAAA  1100
      || |||||||||| | ||| ||| |||||||||||||  ||| |||| ||
seq2  TCAAAGGTGAATGGA-TTCCTGCCTAAAAATAGACCC--TGG-AATG-AA  1091

seq1  CGATAATTTTCTTTTAAACGCCGAGTGCCAAGTGTTTTGCCATCGGGGGC  1150
      |||||   |||||||||||| |||||| |||||||||   ||||||||||
seq2  CGATA---TTCTTTTAAACG-CGAGTG-CAAGTGTTT--GCATCGGGGGC  1134

seq1  -AGTGGGAAAACGTCTCACAGGAC-GTCTT  1178
       |||||   ||||||||||| ||| |||||
seq2  AAGTGG---AACGTCTCACAAGACGGTCTT  1161

seq1: chr15_12735563_12736743
seq2: B6Ng01-226E13.g_67_1245 (reverse)

seq1  AGCA-ACAGCTTTCTTAAGGTGGAGTTGG-TCATCCATTGGCACCCCTGT  48
      |||| |||||||| ||||||||||||||| ||||||||  ||||||  | 
seq2  AGCACACAGCTTT-TTAAGGTGGAGTTGGTTCATCCAT--GCACCC--GG  45

seq1  TAGCTA-CTCTTTGGGGCCTTGTCTTAGTTAGGGTTTTACTGATGTGAAC  97
      |||||| |||||| ||||| |||| ||| ||||   |||||||  |||||
seq2  TAGCTATCTCTTTAGGGCCCTGTC-TAGGTAGG--CTTACTGAATTGAAC  92

seq1  AGACACCATGACCAAGTCAAGTCTTATAAAAAACAACATTTAATTGGGGC  147
      ||||||||||| ||||||| ||||||| ||||||||||||||  ||||||
seq2  AGACACCATGAACAAGTCAGGTCTTATTAAAAACAACATTTA--TGGGGC  140

seq1  TGGCTTACAGGTTCACAGGTT-CAAAGGTTCAGT-CCATTATCATCAAGG  195
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TGGCTTACAGGTTCACAGGTTCCAAAGGTTCAGTCCCATTATCATCAAGG  190

seq1  TGGG-AGCATGGCAGCA-TCCA-GGCTGTCATGGCGCAGGCAGACCTGAG  242
      |||| |||||||||||| |||| ||||||||||||||||||||| |||||
seq2  TGGGAAGCATGGCAGCATTCCAGGGCTGTCATGGCGCAGGCAGAACTGAG  240

seq1  AGTTCTACATCTTCATCCAAAGGCTGCTAGTGGG-AGATTGACTTCCAGG  291
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AGTTCTACATCTTCATCCAAAGGCTGCTAGTGGGAAGATTGAC-TCCAGG  289

seq1  CAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCC  339

seq1  AACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAGATGGTGCCACT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAGATGGTGCCACT  389

seq1  CCCTGGTCCAAGGATAGACAAACCATCATAGGCCTACTTTCAAAACTTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCCAAGGATAGACAAACCATCATAGGCCTACTTTCAAAACTTTG  439

seq1  CATCGGAGGATGAAGACAGCAGAACAAATCCTTCTAGAAGAAAAGATCCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGAGGATGAAGACAGCAGAACAAATCCTTCTAGAAGAAAAGATCCC  489

seq1  ATGTTCCTTCATTTACTCTTTGACCCAGGAAGGAATAGAGAGGCAGCGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTCATTTACTCTTTGACCCAGGAAGGAATAGAGAGGCAGCGCA  539

seq1  GGGCTATAGCTGTGCTTCTAAGTGGATGGAAAGAACCAGAGGTGGGGAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATAGCTGTGCTTCTAAGTGGATGGAAAGAACCAGAGGTGGGGAAG  589

seq1  AAACGTCGCTGCTTCAGTGGTCAGCAATGCTCACCCAACGCAGGGTAACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCGCTGCTTCAGTGGTCAGCAATGCTCACCCAACGCAGGGTAACT  639

seq1  TTAGGGATCTAAACTTCATAGACACAGTTCTTGGAAAATGATGTCAAAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATCTAAACTTCATAGACACAGTTCTTGGAAAATGATGTCAAAGG  689

seq1  TTATGCTTTCCTCTTTGGAACATGATTCTCTTCAGGTCTTATTCATGTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTTCCTCTTTGGAACATGATTCTCTTCAGGTCTTATTCATGTCA  739

seq1  GATCACAAAAGATCCAACCATCCTTGACCATGTACGTACAAGATTAAAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAAAGATCCAACCATCCTTGACCATGTACGTACAAGATTAAAAA  789

seq1  TGTTACTGGGTTGGCAAAGGGGTTCCATAGACAGTCCCCTAAACATCACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGGGTTGGCAAAGGGGTTCCATAGACAGTCCCCTAAACATCACA  839

seq1  GGCTATTGTCAAGGCTATTGGCTATTGATCAGAACTGAAAGGTAAGGCCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGTCAAGGCTATTGGCTATTGATCAGAACTGAAAGGTAAGGCCC  889

seq1  AGTCGCTGAAGTGACCTTTCTTATGTCATCAAACAGAGAAAGAAAGCTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTGAAGTGACCTTTCTTATGTCATCAAACAGAGAAAGAAAGCTGG  939

seq1  TGTGTGGGGCAAGTGAGAGGTGTGACTTGGGGAACAGGCCTGGGACAACG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGCAAGTGAGAGGTGTGACTTGGGGAACAGGCCTGGGACAACG  989

seq1  GTGAGGTTGAGACATGTCCAAACTCCCAAAACTCATCTTGAGACTGGCAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTGAGACATGTCCAAACTCCCAAAACTCATCTTGAGACTGGCAG  1039

seq1  GAGTAAGGATTGCTTCTTTCCTCTTCGGGGCCTGCAACTCCCTCGTCCAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGATTGCTTCTTTCCTCTTCGGGGCCTGCAACTCCCTCGTCCAC  1089

seq1  CACCGAGGTAGCCATGCAGCCTGATAGCCGAATTACAGGAGTAATGTGCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGGTAGCCATGCAGCCTGATAGCCGAATTACAGGAGTAATGTGCT  1139

seq1  CTCTGCCTACAAGGACATGTTCATCAAGCACCTGGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTACAAGGACATGTTCATCAAGCACCTGGAATTC  1179