BAC Information

Click to search

BAC

Clone NameB6Ng01-226H22
Chromosome15 (Build37)
Map Location 29,951,526 - 30,143,754
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226H22.bB6Ng01-226H22.g
ACCGA040422GA040423
length1,1561,193
definitionB6Ng01-226H22.b B6Ng01-226H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,142,589 - 30,143,754)(29,951,526 - 29,952,699)
sequence
gaattcaaaaccaatattataagtttcccccttggttggtgcctacacta
ccgctgaccatcctgaccttagtcttctctctctttcattctgtacccaa
tgggctaagtgactcagcaatgtctgtcatccaatagaaccaacatgagg
tcacctctttcccttactgtccctcctagcatgagccatcacctgaactg
atcacagattttgttatcaggtctccctgtgcccatcattccttccttat
catagatgtagaccgacttaaggctatgttggcttattcactattagttc
aaaaccttccctggctacaagggcctataacatcgagctggtgatttatt
ccctgaagtgtcttatattgctttccttatttccactgcatccaagacac
tagtcctaaaggagtatgagcagtcccacatgtggccctaggtccttcca
gcaccacactccaaactctacagaaatgggtgccattatgttttgatcac
tgatatattccaagaagctccaagactctctaacttaaacaagaaactca
gcaaacatctgtcaatccaaagaagaatcaaaactctaccaactgcacta
attgaaaaacctctcctaaactacataaaattaaacattacatttcatgg
ccaacatcagctagcccagaaaaccctcagtgaactggaatgcaaagtct
gcaatgggcttggatccaggttttatactttagccttgaagaattcctgc
gacttctctttcacaaaattctttctctataaaatcaggaccaccttcca
cggcttttattgttttgttttcaagattaagccatgctgggggaaggtta
tatgatgaccgtgatgaccatccactattttcttctgaacctggccccgt
tgtgatgggctgtcacttttcataaagcaagtgttaaaaatacaccataa
ttataatgtgcagctgcattccaaagccccaaataaattcttattaagtc
acagtttcctttaaagagtgatggtaactttgggcttccccatttcaagc
agaaaagctgtatgcccagagggcagctttcacaggatataggagatgcc
aagattcagggaagaaatcatttcacagattaacggacacggcagcttgt
ttcagc
gaattcatttatattgatgatgcatttatttatttatttatttatttatt
tattccacttaggagggttcatgagcatctgttaaacctgcatgctctgt
tagcaactttgacaggcaacaactcttacatagaacttcacaaccttcca
agttggcaattccctgcatttcttttttttttttaatattttttattacg
tattttcctcaattacatttccaatgctatcccaaaagtcccccatactc
tcccccccacttccctacccatccattcccaattttttggccctggcgtt
cccctgtactggagcatataaagtttgcaagtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatacatatgcagctagagtcaa
gagctccagggtactggttagttcgtaatgttgttccacctatagggttg
cagatccctttagctccttgggtactttctccagatcctccattgggagc
cctgtgatccatccaatagctaactgtgagcatccacttgtgtgtttgct
aggccctggcatagtctcacatgagacagctatatctgggtcctttaatt
ccctgcatttcattgaaggatttatttggtggcaatcctccagctatttc
tgtccagatagagcattcattttttttatttataaatgaatgagaagcca
tcaatggagtggggtacccgtaagtaaggacttttatgtccttgacaatg
catgatctagcatgtcctcttgtatcttccttgaacagtaagtttttagc
tctggaaactcattatgggttcagatccaagctacatcccaagacatcat
ggcacacattcagtcttctcttcatttctgacaatttagagcttcaataa
tctgtgtccaaagcttcttttacttatgacgcttcagatggtgtgaacct
cactacaatagaaaatggccaagccctcatccagaagaatagaatttatc
ctaacttggagagcattcaacaccacacttctccctgggatcttgaggcc
atggcgtgttaatctcttctgacctgagaatactagcctcaacctcaatt
cagacgtgcatttgcctatcccactggttcaaataatcatttcaatttgc
tacttcaggtttcctaacttaagaattcggaaatttttttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30142589_30143754
seq2: B6Ng01-226H22.b_47_1202 (reverse)

seq1  GCTGAAACAAGCTGCCGTTGTCCCCGTTTTATCCTGTGAAATGATGTCTT  50
      ||||||||||||||||| |||||     |||  |||||||||||| ||||
seq2  GCTGAAACAAGCTGCCG-TGTCC----GTTAATCTGTGAAATGATTTCTT  45

seq1  TCCCCTGATTCTTTTGGCATCTCCTATTAATCCCTGGTTGAAGGCTGCCC  100
        |||||| ||  ||||||||||||||  || ||||  |||| |||||||
seq2  --CCCTGAATC--TTGGCATCTCCTAT--AT-CCTG--TGAAAGCTGCCC  86

seq1  TCTGGGCATTACAAGCTTTTCTGCTTG-AATGGGAAAGCCC-AAGTAACC  148
      |||||||| ||| |||||||||||||| |||||| |||||| |||| |||
seq2  TCTGGGCA-TAC-AGCTTTTCTGCTTGAAATGGGGAAGCCCAAAGTTACC  134

seq1  ATCACTCTTTAA--GGAACTGTGACTTAATAAG-ATTTATTTGGGGCTTT  195
      ||||||||||||  | ||||||||||||||||| ||||||||||||||||
seq2  ATCACTCTTTAAAGGAAACTGTGACTTAATAAGAATTTATTTGGGGCTTT  184

seq1  -GAATGCAGCTGCACATTATAATTATGGTGTATTTTTAACACTTGCTTTA  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGCTGCACATTATAATTATGGTGTATTTTTAACACTTGCTTTA  234

seq1  TGAAAAGTGACAGCCCATCACAACGGGGCCAGGTTCAGAAGAAAATAGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTGACAGCCCATCACAACGGGGCCAGGTTCAGAAGAAAATAGTG  284

seq1  GATGGTCATCACGGTCATCATATAACCTTCCCCCAGCATGGCTTAATCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCATCACGGTCATCATATAACCTTCCCCCAGCATGGCTTAATCTT  334

seq1  GAAAACAAAACAATAAAAGCCGTGGAAGGTGGTCCTGATTTTATAGAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAACAATAAAAGCCGTGGAAGGTGGTCCTGATTTTATAGAGAA  384

seq1  AGAATTTTGTGAAAGAGAAGTCGCAGGAATTCTTCAAGGCTAAAGTATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGTGAAAGAGAAGTCGCAGGAATTCTTCAAGGCTAAAGTATAA  434

seq1  AACCTGGATCCAAGCCCATTGCAGACTTTGCATTCCAGTTCACTGAGGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGATCCAAGCCCATTGCAGACTTTGCATTCCAGTTCACTGAGGGT  484

seq1  TTTCTGGGCTAGCTGATGTTGGCCATGAAATGTAATGTTTAATTTTATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCTAGCTGATGTTGGCCATGAAATGTAATGTTTAATTTTATGT  534

seq1  AGTTTAGGAGAGGTTTTTCAATTAGTGCAGTTGGTAGAGTTTTGATTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGAGAGGTTTTTCAATTAGTGCAGTTGGTAGAGTTTTGATTCTT  584

seq1  CTTTGGATTGACAGATGTTTGCTGAGTTTCTTGTTTAAGTTAGAGAGTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGACAGATGTTTGCTGAGTTTCTTGTTTAAGTTAGAGAGTCT  634

seq1  TGGAGCTTCTTGGAATATATCAGTGATCAAAACATAATGGCACCCATTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTCTTGGAATATATCAGTGATCAAAACATAATGGCACCCATTTC  684

seq1  TGTAGAGTTTGGAGTGTGGTGCTGGAAGGACCTAGGGCCACATGTGGGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTTTGGAGTGTGGTGCTGGAAGGACCTAGGGCCACATGTGGGAC  734

seq1  TGCTCATACTCCTTTAGGACTAGTGTCTTGGATGCAGTGGAAATAAGGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATACTCCTTTAGGACTAGTGTCTTGGATGCAGTGGAAATAAGGAA  784

seq1  AGCAATATAAGACACTTCAGGGAATAAATCACCAGCTCGATGTTATAGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATAAGACACTTCAGGGAATAAATCACCAGCTCGATGTTATAGGC  834

seq1  CCTTGTAGCCAGGGAAGGTTTTGAACTAATAGTGAATAAGCCAACATAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGCCAGGGAAGGTTTTGAACTAATAGTGAATAAGCCAACATAGC  884

seq1  CTTAAGTCGGTCTACATCTATGATAAGGAAGGAATGATGGGCACAGGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCGGTCTACATCTATGATAAGGAAGGAATGATGGGCACAGGGAG  934

seq1  ACCTGATAACAAAATCTGTGATCAGTTCAGGTGATGGCTCATGCTAGGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATAACAAAATCTGTGATCAGTTCAGGTGATGGCTCATGCTAGGAG  984

seq1  GGACAGTAAGGGAAAGAGGTGACCTCATGTTGGTTCTATTGGATGACAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTAAGGGAAAGAGGTGACCTCATGTTGGTTCTATTGGATGACAGA  1034

seq1  CATTGCTGAGTCACTTAGCCCATTGGGTACAGAATGAAAGAGAGAGAAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGAGTCACTTAGCCCATTGGGTACAGAATGAAAGAGAGAGAAGA  1084

seq1  CTAAGGTCAGGATGGTCAGCGGTAGTGTAGGCACCAACCAAGGGGGAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCAGGATGGTCAGCGGTAGTGTAGGCACCAACCAAGGGGGAAAC  1134

seq1  TTATAATATTGGTTTTGAATTC  1166
      ||||||||||||||||||||||
seq2  TTATAATATTGGTTTTGAATTC  1156

seq1: chr15_29951526_29952699
seq2: B6Ng01-226H22.g_68_1260

seq1  GAATTCATTTATATTGATGATGCATTTATTTATTTATTTATTTATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATATTGATGATGCATTTATTTATTTATTTATTTATTTATT  50

seq1  TATTCCACTTAGGAGGGTTCATGAGCATCTGTTAAACCTGCATGCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACTTAGGAGGGTTCATGAGCATCTGTTAAACCTGCATGCTCTGT  100

seq1  TAGCAACTTTGACAGGCAACAACTCTTACATAGAACTTCACAACCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTTTGACAGGCAACAACTCTTACATAGAACTTCACAACCTTCCA  150

seq1  AGTTGGCAATTCCCTGCATTTCTTTTTTTTTTTTAATATTTTTTATTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCAATTCCCTGCATTTCTTTTTTTTTTTTAATATTTTTTATTACG  200

seq1  TATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACTC  250

seq1  TCCCCCCCACTTCCCTACCCATCCATTCCCAATTTTTTGGCCCTGGCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCACTTCCCTACCCATCCATTCCCAATTTTTTGGCCCTGGCGTT  300

seq1  CCCCTGTACTGGAGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTACTGGAGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTC  350

seq1  CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA  400

seq1  GAGCTCCAGGGTACTGGTTAGTTCGTAATGTTGTTCCACCTATAGGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGGGTACTGGTTAGTTCGTAATGTTGTTCCACCTATAGGGTTG  450

seq1  CAGATCCCTTTAGCTCCTTGGGTACTTTCTCCAGATCCTCCATTGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTTTAGCTCCTTGGGTACTTTCTCCAGATCCTCCATTGGGAGC  500

seq1  CCTGTGATCCATCCAATAGCTAACTGTGAGCATCCACTTGTGTGTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATCCATCCAATAGCTAACTGTGAGCATCCACTTGTGTGTTTGCT  550

seq1  AGGCCCTGGCATAGTCTCACATGAGACAGCTATATCTGGGTCCTTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGGCATAGTCTCACATGAGACAGCTATATCTGGGTCCTTTAATT  600

seq1  CCCTGCATTTCATTGAAGGATTTATTTGGTGGCAATCCTCCAGCTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATTTCATTGAAGGATTTATTTGGTGGCAATCCTCCAGCTATTTC  650

seq1  TGTCCAGATAGAGCATTCATTTTTTTTATTTATAAATGAATGAGAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGATAGAGCATTCATTTTTTTTATTTATAAATGAATGAGAAGCCA  700

seq1  TCAATGGAGTGGGGTACCCGTAAGTAAGGAC-TTTATGTCCTTGACAATG  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAATGGAGTGGGGTACCCGTAAGTAAGGACTTTTATGTCCTTGACAATG  750

seq1  CATGATCTAGCATGTCCTCTTGTATCTTCCTTGAACAGTAAG-TTTTAGC  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATGATCTAGCATGTCCTCTTGTATCTTCCTTGAACAGTAAGTTTTTAGC  800

seq1  TCTGGAAACTCATTAT-GGTTCAGATCCAAGCTACAT-CCAAGACATCAT  846
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TCTGGAAACTCATTATGGGTTCAGATCCAAGCTACATCCCAAGACATCAT  850

seq1  GGCACACATTCAGTCTTCTCTTCATTTCTGACAATTTAGAGCTTCAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACATTCAGTCTTCTCTTCATTTCTGACAATTTAGAGCTTCAATAA  900

seq1  TCTGTGTCCAAAGCTTC-TTTACTTATGACGC-TCAGAT-GTGTG-ACCT  942
      ||||||||||||||||| |||||||||||||| |||||| ||||| ||||
seq2  TCTGTGTCCAAAGCTTCTTTTACTTATGACGCTTCAGATGGTGTGAACCT  950

seq1  CACTACAATAG-AAATGGCCAAG-CCTCATCCAG-AGATAAGAA-TTAT-  987
      ||||||||||| ||||||||||| |||||||||| |||  |||| |||| 
seq2  CACTACAATAGAAAATGGCCAAGCCCTCATCCAGAAGAATAGAATTTATC  1000

seq1  CTAACTT-GAGAGCATCCAACCACACACCTCTCCCT-GGATC-TGAGGCC  1034
      ||||||| |||||||| ||||  ||||| ||||||| ||||| |||||||
seq2  CTAACTTGGAGAGCATTCAACACCACACTTCTCCCTGGGATCTTGAGGCC  1050

seq1  AT-GCGTG-TAATCTCCTCTGACCTGAG-ATACTAGCTCCCAACTTCAAT  1081
      || ||||| ||||||| ||||||||||| |||||||| | |||| |||||
seq2  ATGGCGTGTTAATCTCTTCTGACCTGAGAATACTAGC-CTCAACCTCAAT  1099

seq1  CCAGACATGCATTTGCCTAATCCCACT-GTTCACATAATCATTTCAAAAT  1130
       ||||| ||||||||||| |||||||| ||||| ||||||||||| || |
seq2  TCAGACGTGCATTTGCCT-ATCCCACTGGTTCAAATAATCATTTC-AATT  1147

seq1  TGCTACTCTCCATGTTACTAACTAAAGTA-TCG--AATTTTTTTCTG  1174
      ||||||| ||    || |||||| ||| | |||  ||||||||||||
seq2  TGCTACT-TCAGGTTTCCTAACTTAAGAATTCGGAAATTTTTTTCTG  1193