BAC Information

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BAC

Clone NameB6Ng01-227D16
Chromosome3 (Build37)15 (Build37)
Map Location 98,679,524 - 98,679,64887,784,916 - 87,786,090
singlet/doubletsingletsinglet
Overlap geneHao3
Upstream genePde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1
Downstream geneLOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D16.bB6Ng01-227D16.g
ACCGA040954GA040955
length2541,177
definitionB6Ng01-227D16.b B6Ng01-227D16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,679,524 - 98,679,648)(87,784,916 - 87,786,090)
sequence
tacactgaattaattgaatataacaaatgtttaattaatttttttattat
tttctctctttctctttctctttctctttctctttctctttctctttctc
tttctctttctctttctctttctctttctctttctttctctttctctttc
cctctctctctctctccctccctccctcactctctctccttaaactctct
ctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgt
gtgt
gaattcttatctggaggaagtagggcccgaggaaacttttgggatcttct
ggctcttaggaaacgtttttcctttccggttgtctcgatggcctcactga
gatgtggcagatcacatgtgttcccctggctttctcacacccatgtttat
gcccagaaggctcttacctgcagacacaatggcagctttatttagaacac
cttggaaacgcccgctgtacagaaggcaagtcccgtgctcatttagcaca
tacctcccaggggcctatgcacatcctacactacactctgatggaacaga
gttggtaaaaagcaaacacataatgctgctagaggcttcttgatgctcag
gtcctggtggggaagatggagctggtctcccagcccaggtttggccactc
ttctgcctattttgtcttgccttttctctccgtacattcacaatgccatt
tgttttctgtgtacatcagtagaaggttgttctgggcccagcttgtaaac
cagtgctcacattcagtagcagcttgcagagatggtcacatctttctggg
aacacacagccattcatgggcaagaagcactgcttgactgggtgttcact
gagatgtacatggaagtcccagggcctcagaatgagagattagacaactg
gccccgatatgggctataatcctcactccacagaccagaatggtggctgg
ctgtgcaggctggggagtattctccactctcccttgccagtcaacttacc
aaacagaaaagtggtcagtgggtacatcatgatggatgatcacaggacgg
tcatgtggggtactgtgttttccttcagagacatgaacacatatctattc
acctcagatttaggggaaccactaactgaagaagtgattcagtccaagtc
tagtttagagaacttgtgagtttactgggataacatatagcaacaagggt
gtctcaaagcagtccgcatggaaaagtcccactccagtatggctgcctac
ttccagtaatggctgcctgtgatgctgcatagctggaacctcttctgcat
gaccagcagacagctcatgctggatatccgactcttcttcagcactgcca
caattatgtaaccttgtgggtaccacttctgaattcctaacctgggagtc
tcatggaactcctacctgacttccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98679524_98679648
seq2: B6Ng01-227D16.b_103_304

seq1  ------------------------------------------------TC  2
                                                      | 
seq2  TCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT  50

seq1  TCTCTTTCTC--TCTCTTTCTC--TCTCTTTCTCTCTCTTTCTCT----C  44
      ||||||||||  ||||||||||  ||||||||| |||||||||||    |
seq2  TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTTTCTCTTTCTCTTTCCC  100

seq1  TCTCTCTCTCTCT--------------CTCTCTCT-------CTCTCTCT  73
      |||||||||||||              ||||||||       ||||||||
seq2  TCTCTCTCTCTCTCCCTCCCTCCCTCACTCTCTCTCCTTAAACTCTCTCT  150

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGT  123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGT  200

seq1  GT  125
      ||
seq2  GT  202

seq1: chr15_87784916_87786090
seq2: B6Ng01-227D16.g_63_1239

seq1  GAATTCTTATCTGGAGGAAGTAGGGCCCGAGGAAACTTTTGGGATCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTGGAGGAAGTAGGGCCCGAGGAAACTTTTGGGATCTTCT  50

seq1  GGCTCTTAGGAAACGTTTTTCCTTTCCGGTTGTCTCGATGGCCTCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTAGGAAACGTTTTTCCTTTCCGGTTGTCTCGATGGCCTCACTGA  100

seq1  GATGTGGCAGATCACATGTGTTCCCCTGGCTTTCTCACACCCATGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCAGATCACATGTGTTCCCCTGGCTTTCTCACACCCATGTTTAT  150

seq1  GCCCAGAAGGCTCTTACCTGCAGACACAATGGCAGCTTTATTTAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAGGCTCTTACCTGCAGACACAATGGCAGCTTTATTTAGAACAC  200

seq1  CTTGGAAACGCCCGCTGTACAGAAGGCAAGTCCCGTGCTCATTTAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACGCCCGCTGTACAGAAGGCAAGTCCCGTGCTCATTTAGCACA  250

seq1  TACCTCCCAGGGGCCTATGCACATCCTACACTACACTCTGATGGAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCAGGGGCCTATGCACATCCTACACTACACTCTGATGGAACAGA  300

seq1  GTTGGTAAAAAGCAAACACATAATGCTGCTAGAGGCTTCTTGATGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAAAAGCAAACACATAATGCTGCTAGAGGCTTCTTGATGCTCAG  350

seq1  GTCCTGGTGGGGAAGATGGAGCTGGTCTCCCAGCCCAGGTTTGGCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGGGGAAGATGGAGCTGGTCTCCCAGCCCAGGTTTGGCCACTC  400

seq1  TTCTGCCTATTTTGTCTTGCCTTTTCTCTCCGTACATTCACAATGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTATTTTGTCTTGCCTTTTCTCTCCGTACATTCACAATGCCATT  450

seq1  TGTTTTCTGTGTACATCAGTAGAAGGTTGTTCTGGGCCCAGCTTGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTGTACATCAGTAGAAGGTTGTTCTGGGCCCAGCTTGTAAAC  500

seq1  CAGTGCTCACATTCAGTAGCAGCTTGCAGAGATGGTCACATCTTTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCACATTCAGTAGCAGCTTGCAGAGATGGTCACATCTTTCTGGG  550

seq1  AACACACAGCCATTCATGGGCAAGAAGCACTGCTTGACTGGGTGTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGCCATTCATGGGCAAGAAGCACTGCTTGACTGGGTGTTCACT  600

seq1  GAGATGTACATGGAAGTCCCAGGGCCTCAGAATGAGAGATTAGACAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTACATGGAAGTCCCAGGGCCTCAGAATGAGAGATTAGACAACTG  650

seq1  GCCCCGATATGGGCTATAATCCTCACTCCACAGACCAGAATGGTGGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGATATGGGCTATAATCCTCACTCCACAGACCAGAATGGTGGCTGG  700

seq1  CTGTGCAGGCTGGGGAGTATTCTCCACTCTCCCTTGCCAGTCAACTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGGCTGGGGAGTATTCTCCACTCTCCCTTGCCAGTCAACTTACC  750

seq1  AAACAGAAAAGTGGTCAGTGGGTACATCATGATGGATGATCACAGGACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAGTGGTCAGTGGGTACATCATGATGGATGATCACAGGACGG  800

seq1  TCATGTGGGGTACTGTGTTTTCCTTCAGAGACATGAACACATATCTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGGGTACTGTGTTTTCCTTCAGAGACATGAACACATATCTATTC  850

seq1  ACCTCAGATTTA-GGGAACCACTAACTGAAGAAGTGATTCAGTCCAAGTC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGATTTAGGGGAACCACTAACTGAAGAAGTGATTCAGTCCAAGTC  900

seq1  TAGTTTAGAGAACTTGTGAGTTTACTGGGATAACATATAGCAACAAGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGAGAACTTGTGAGTTTACTGGGATAACATATAGCAACAAGGGT  950

seq1  GTCTCAAAAGCAG-CCGCATGGAAAAGT-CCACTCCAGTATGGCTGCCTA  997
      ||||| ||||||| |||||||||||||| |||||||||||||||||||||
seq2  GTCTC-AAAGCAGTCCGCATGGAAAAGTCCCACTCCAGTATGGCTGCCTA  999

seq1  C-TCCAGT-ATGGCTGCCTGTGAATGCTGCATAGCTGGAA-CTC-TCTGC  1043
      | |||||| ||||||||||||| ||||||||||||||||| ||| |||||
seq2  CTTCCAGTAATGGCTGCCTGTG-ATGCTGCATAGCTGGAACCTCTTCTGC  1048

seq1  ATGACCAGCAGACAGCTCCATGCTGGGATATTCGACTC-TCTCCAGCAAC  1092
      ||||||||||||||||| |||||| |||||| |||||| ||| |||| ||
seq2  ATGACCAGCAGACAGCT-CATGCT-GGATATCCGACTCTTCTTCAGC-AC  1095

seq1  TGCCACCATTTATGTAACCTTGTGGGTACCAC-TCTGAAATTCCTAAACC  1141
      ||||| || ||||||||||||||||||||||| |||| ||||||| ||||
seq2  TGCCA-CAATTATGTAACCTTGTGGGTACCACTTCTG-AATTCCT-AACC  1142

seq1  TGGGATGCTCATGAGCTTCCTACCTGAC-TCCAGG  1175
      |||||  ||||||    ||||||||||| ||||||
seq2  TGGGAGTCTCATGGAACTCCTACCTGACTTCCAGG  1177