BAC Information

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BAC

Clone NameB6Ng01-227F16
Chromosome14 (Build37)15 (Build37)
Map Location 9,478,206 - 9,478,31187,784,916 - 87,785,954
singlet/doubletsingletsinglet
Overlap gene4930452B06Rik
Upstream geneLOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005
Downstream geneLOC100041948, Fhit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227F16.bB6Ng01-227F16.g
ACCGA041046GA041047
length2701,050
definitionB6Ng01-227F16.b B6Ng01-227F16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,478,206 - 9,478,311)(87,784,916 - 87,785,954)
sequence
tacactgaattaattgaatataacaaatgtttaattaatttttttattat
tttctctctttctctttctctttctctttctctttctctttctctttctc
tttctctttctctttctctttctctttctctttctttctctttctctttc
cctctctctctctctccctccctccctcactctctctccttcaactctct
ctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgt
gtgtatgtgagtgtgtatgt
gaattcttatctggaggaagtagggcccgaggaaacttttgggatcttct
ggctcttaggaaacgtttttcctttccggttgtctcgatggcctcactga
gatgtggcagatcacatgtgttcccctggctttctcacacccatgtttat
gcccagaaggctcttacctgcagacacaatggcagctttatttagaacac
cttggaaacgcccgctgtacagaaggcaagtcccgtgctcatttagcaca
tacctcccaggggcctatgcacatcctacactacactctgatggaacaga
gttggtaaaaagcaaacacataatgctgctagaggcttcttgatgctcag
gtcctggtggggaagatggagctggtctcccagcccaggtttggccactc
ttctgcctattttgtcttgccttttctctccgtacattcacaatgccatt
tgttttctgtgtacatcagtagaaggttgttctgggcccagcttgtaaac
cagtgctcacattcagtagcagcttgcagagatggtcacatctttctggg
aacacacagccattcatgggcaagaagcactgcttgactggggtgttcac
tgagatgtacatggaagtcccagggcctcagaatgagagattagacaact
ggccccgatatgggctataatcctcactccacagaccagaatggtggctg
gctgtgcaggctggggagtattctccactctccccttgccagtcaactta
ccaaacagaaaagtggtcagtggggtacatcatgatggatgatcacagga
cggttcatgtggggtactgtgttttcttcagagacatgaacacatatctt
attcacctcagatttagggaaccactactgagaagtgattcagtcccagt
ctagtttagagaccttgtgagtctactgggataacatatagcaacaaggg
tgtctcaaaagcagctcgccattgcaagtccacttcagtaatggcttgcc
tacctccagtatggctggcctgtggaaatgcctgcaatagctggaaatct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_9478206_9478311
seq2: B6Ng01-227F16.b_251_323 (reverse)

seq1  ACATACACACTCACATACACACACAGAGAGGGGGGAGACAAAGAGAGAGA  50
      ||||||||||||||||||||||||                         |
seq2  ACATACACACTCACATACACACAC-------------------------A  25

seq1  CAGACACAGAGAGACAGACACAGAGAGACTTAGAGAGAGACAGAAAAAGA  100
      || ||||||||||| ||    ||||||    ||||||||| ||| | |||
seq2  CACACACAGAGAGAGAG----AGAGAG----AGAGAGAGAGAGAGAGAGA  67

seq1  GAGAGA  106
      ||||||
seq2  GAGAGA  73

seq1: chr15_87784916_87785954
seq2: B6Ng01-227F16.g_72_1121

seq1  GAATTCTTATCTGGAGGAAGTAGGGCCCGAGGAAACTTTTGGGATCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTGGAGGAAGTAGGGCCCGAGGAAACTTTTGGGATCTTCT  50

seq1  GGCTCTTAGGAAACGTTTTTCCTTTCCGGTTGTCTCGATGGCCTCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTAGGAAACGTTTTTCCTTTCCGGTTGTCTCGATGGCCTCACTGA  100

seq1  GATGTGGCAGATCACATGTGTTCCCCTGGCTTTCTCACACCCATGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCAGATCACATGTGTTCCCCTGGCTTTCTCACACCCATGTTTAT  150

seq1  GCCCAGAAGGCTCTTACCTGCAGACACAATGGCAGCTTTATTTAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAGGCTCTTACCTGCAGACACAATGGCAGCTTTATTTAGAACAC  200

seq1  CTTGGAAACGCCCGCTGTACAGAAGGCAAGTCCCGTGCTCATTTAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACGCCCGCTGTACAGAAGGCAAGTCCCGTGCTCATTTAGCACA  250

seq1  TACCTCCCAGGGGCCTATGCACATCCTACACTACACTCTGATGGAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCAGGGGCCTATGCACATCCTACACTACACTCTGATGGAACAGA  300

seq1  GTTGGTAAAAAGCAAACACATAATGCTGCTAGAGGCTTCTTGATGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAAAAGCAAACACATAATGCTGCTAGAGGCTTCTTGATGCTCAG  350

seq1  GTCCTGGTGGGGAAGATGGAGCTGGTCTCCCAGCCCAGGTTTGGCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGGGGAAGATGGAGCTGGTCTCCCAGCCCAGGTTTGGCCACTC  400

seq1  TTCTGCCTATTTTGTCTTGCCTTTTCTCTCCGTACATTCACAATGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTATTTTGTCTTGCCTTTTCTCTCCGTACATTCACAATGCCATT  450

seq1  TGTTTTCTGTGTACATCAGTAGAAGGTTGTTCTGGGCCCAGCTTGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTGTACATCAGTAGAAGGTTGTTCTGGGCCCAGCTTGTAAAC  500

seq1  CAGTGCTCACATTCAGTAGCAGCTTGCAGAGATGGTCACATCTTTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCACATTCAGTAGCAGCTTGCAGAGATGGTCACATCTTTCTGGG  550

seq1  AACACACAGCCATTCATGGGCAAGAAGCACTGCTTGACT-GGGTGTTCAC  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACACACAGCCATTCATGGGCAAGAAGCACTGCTTGACTGGGGTGTTCAC  600

seq1  TGAGATGTACATGGAAGTCCCAGGGCCTCAGAATGAGAGATTAGACAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTACATGGAAGTCCCAGGGCCTCAGAATGAGAGATTAGACAACT  650

seq1  GGCCCCGATATGGGCTATAATCCTCACTCCACAGACCAGAATGGTGGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGATATGGGCTATAATCCTCACTCCACAGACCAGAATGGTGGCTG  700

seq1  GCTGTGCAGGCTGGGGAGTATTCTCCACTCT-CCCTTGCCAGTCAACTTA  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGTGCAGGCTGGGGAGTATTCTCCACTCTCCCCTTGCCAGTCAACTTA  750

seq1  CCAAACAGAAAAGTGGTCAGT-GGGTACATCATGATGGATGATCACAGGA  797
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAAACAGAAAAGTGGTCAGTGGGGTACATCATGATGGATGATCACAGGA  800

seq1  CGG-TCATGTGGGGTACTGTGTTTTCCTTCAGAGACATGAACACATATC-  845
      ||| ||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CGGTTCATGTGGGGTACTGTGTTTT-CTTCAGAGACATGAACACATATCT  849

seq1  TATTCACCTCAGATTTAGGGAACCACTAACTGAAGAAGTGATTCAGTCCA  895
      ||||||||||||||||||||||||||| |||| |||||||||||||||| 
seq2  TATTCACCTCAGATTTAGGGAACCACT-ACTG-AGAAGTGATTCAGTCCC  897

seq1  AGTCTAGTTTAGAGAACTTGTGAGTTTACTGGGATAACATATAGCAACAA  945
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AGTCTAGTTTAGAGACCTTGTGAGTCTACTGGGATAACATATAGCAACAA  947

seq1  GGGTGTCTCAAAAGCAGC-CG-CATGGAAAAGTCCACTCCAGT-ATGGC-  991
      |||||||||||||||||| || ||| |  ||||||||| |||| ||||| 
seq2  GGGTGTCTCAAAAGCAGCTCGCCATTG-CAAGTCCACTTCAGTAATGGCT  996

seq1  TGCCTA-CTCCAGTATGGCT-GCCTGTG--AATG-CTGC-ATAGCTGGAA  1035
      |||||| ||||||||||||| |||||||  |||| |||| ||||||||||
seq2  TGCCTACCTCCAGTATGGCTGGCCTGTGGAAATGCCTGCAATAGCTGGAA  1046

seq1  CTCT  1039
       |||
seq2  ATCT  1050