BAC Information

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BAC

Clone NameB6Ng01-227G23
Chromosome15 (Build37)
Map Location 35,958,569 - 36,091,620
singlet/doubletdoublet
Overlap geneRgs22, Fbxo43
Upstream geneStk3, Osr2, Vps13b, EG666183, Cox6c
Downstream gene1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G23.bB6Ng01-227G23.g
ACCGA041105GA041106
length948693
definitionB6Ng01-227G23.b B6Ng01-227G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,958,569 - 35,959,518)(36,090,931 - 36,091,620)
sequence
gaattctcatgaataataaacccatgatcacaagaaaagcattaaaatga
tccctggcagactggaaacttaagagtatgccctgtgtgtgaagggaatc
tgtgatatctgttaccacagtgattgggagagctggctggctaggtgggt
gtccactcctccatggctactccatgtgcctctcctaaagatgcatggtc
agctgaggagaacgaccattcttctatcatgggcttagttgcactcccct
gctagaagctccaaacaagttttcaaagtaagcaatttaagagttagttc
agcaagacactgtaggtagaacacttgccactgccatactccctcaagac
ctaatacagatgtcaacatttctgctgatactccctggcctaccattgct
ccatcttagccatcacctactccaagctgaactgcgcctccctacaacag
agccccaaagacatttagatcacaagggcagctgctttaatggatctaga
gtagaaagccattattgggaggtgctgactctggggcctgcctagtagaa
gtaggtcacaggaatctgtcactgtgattattttgttgtgttttccctgt
ctctgcttcctgtctgccagtatctactgttcttctttcatactctgttg
ggcatgatggactgaatgtcccaaaccatgtgccaaaaaactaccttctc
tctttaagttgccctctcgtgtgttttggtcatggttagagcaccattat
ctgatgtcacagctggccaggtgtggtaacacctggaatccaagcatccc
agaggcttctctcccttaggatgtctatagctgtgatggaatgtcatgac
taaaagcaagttggggaggtaagggttttttttttttttttttgggctta
cattttccatatccttcattaagaaagtcaggacaggaactcaacagg
gaattctttgaggacagggacgaggggaaaattgccagactgcagcgtgt
tctcgcaggactgattggcaagaagatgggcatagaacagctggatatcc
tgaccgaattacagtatagaaacttgaagcacatcctagctatggtttta
gagtccttgacttcggagagtttatacaggtaaggaataaaagtggctca
tgaaagaaaacttttatcattttttaaattggtgttttgttgtgtttctg
tctttggttgtcttacactatatcagaggaagcttaaatgacctccctag
tagccctgtgatccctgatgggataggctaggcctgtaatctctgatggg
acagcttgtgatctcaggtacttgagaagctgagggagaaggattgctca
gatccaaggtcagaagaaaaaaaatcaaaatgccaggctttatttcaaaa
ttgcttcttgttgttgttggtggtggtcatggtggttgtgtgtgtgtgca
tgtgtttgtgtggctttttaaaattgccttactttctgagacaaggccag
gaggcctcctgcctccactttccccacactgggattgcgagtgggtgctg
agccttttatgtggatagtgaaatcaaaaacgcaggtcttcctacttaca
tttactttacccagtcctcactaccgtgagtggggggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_35958569_35959518
seq2: B6Ng01-227G23.b_46_993

seq1  GAATTCTCATGAATAATAAACCCATGATCACAAGAAAAGCATTAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGAATAATAAACCCATGATCACAAGAAAAGCATTAAAATGA  50

seq1  TCCCTGGCAGACTGGAAACTTAAGAGTATGCCCTGTGTGTGAAGGGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCAGACTGGAAACTTAAGAGTATGCCCTGTGTGTGAAGGGAATC  100

seq1  TGTGATATCTGTTACCACAGTGATTGGGAGAGCTGGCTGGCTAGGTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATCTGTTACCACAGTGATTGGGAGAGCTGGCTGGCTAGGTGGGT  150

seq1  GTCCACTCCTCCATGGCTACTCCATGTGCCTCTCCTAAAGATGCATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCCTCCATGGCTACTCCATGTGCCTCTCCTAAAGATGCATGGTC  200

seq1  AGCTGAGGAGAACGACCATTCTTCTATCATGGGCTTAGTTGCACTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGAACGACCATTCTTCTATCATGGGCTTAGTTGCACTCCCCT  250

seq1  GCTAGAAGCTCCAAACAAGTTTTCAAAGTAAGCAATTTAAGAGTTAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGCTCCAAACAAGTTTTCAAAGTAAGCAATTTAAGAGTTAGTTC  300

seq1  AGCAAGACACTGTAGGTAGAACACTTGCCACTGCCATACTCCCTCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACACTGTAGGTAGAACACTTGCCACTGCCATACTCCCTCAAGAC  350

seq1  CTAATACAGATGTCAACATTTCTGCTGATACTCCCTGGCCTACCATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACAGATGTCAACATTTCTGCTGATACTCCCTGGCCTACCATTGCT  400

seq1  CCATCTTAGCCATCACCTACTCCAAGCTGAACTGCGCCTCCCTACAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAGCCATCACCTACTCCAAGCTGAACTGCGCCTCCCTACAACAG  450

seq1  AGCCCCAAAGACATTTAGATCACAAGGGCAGCTGCTTTAATGGATCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAAAGACATTTAGATCACAAGGGCAGCTGCTTTAATGGATCTAGA  500

seq1  GTAGAAAGCCATTATTGGGAGGTGCTGACTCTGGGGCCTGCCTAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGCCATTATTGGGAGGTGCTGACTCTGGGGCCTGCCTAGTAGAA  550

seq1  GTAGGTCACAGGAATCTGTCACTGTGATTATTTTGTTGTGTTTTCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCACAGGAATCTGTCACTGTGATTATTTTGTTGTGTTTTCCCTGT  600

seq1  CTCTGCTTCCTGTCTGCCAGTATCTACTGTTCTTCTTTCATACTCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCCTGTCTGCCAGTATCTACTGTTCTTCTTTCATACTCTGTTG  650

seq1  GGCATGATGGACTGAATGTCCCAAACCATGTGCCAAAAAACTACCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATGGACTGAATGTCCCAAACCATGTGCCAAAAAACTACCTTCTC  700

seq1  TCTTTAAGTTGCCCTCTCGTGTGTTTTGGTCATGGTTAGAGCACCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTTGCCCTCTCGTGTGTTTTGGTCATGGTTAGAGCACCATTAT  750

seq1  CTGATGTCACAGCTGGCCAGGTGTGGTAACACCTGGAATCCAAGCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCACAGCTGGCCAGGTGTGGTAACACCTGGAATCCAAGCATCCC  800

seq1  AGAGGCTTCTCTCCCTTAGGATGTCTATAGCTGTGATGGAATGTCATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTCTCTCCCTTAGGATGTCTATAGCTGTGATGGAATGTCATGAC  850

seq1  TAAAAAGCAAGTTGGGGAGGTAAGGGTTTTTTTTTTTTTTTTTTTGGCTT  900
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  T-AAAAGCAAGTTGGGGAGGTAAGGGTTTTTTTTTTTTTTTTTTGGGCTT  899

seq1  ACA-TTTCCATATTCATCATTAAAGAAAGTCAGGACAGGAACCCAAACAG  949
      ||| ||||||||| | ||||| |||||||||||||||||||| | |||||
seq2  ACATTTTCCATATCCTTCATT-AAGAAAGTCAGGACAGGAACTC-AACAG  947

seq1  G  950
      |
seq2  G  948

seq1: chr15_36090931_36091620
seq2: B6Ng01-227G23.g_68_760 (reverse)

seq1  CACACACACCCCCACTCACGGTAGTGAGGACT-GGTAAAGTAAATGTAAG  49
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  CACACAC-CCCCCACTCACGGTAGTGAGGACTGGGTAAAGTAAATGTAAG  49

seq1  TAGGAAGACCTGCG-TTTTGA-TTCACTATCCACATAAAAGGCTCAGCAC  97
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  TAGGAAGACCTGCGTTTTTGATTTCACTATCCACATAAAAGGCTCAGCAC  99

seq1  CCACTCGCAATCCCAGTGTGGGG-AAGTGGAGGCAGGAGGCCTCCTGGCC  146
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCACTCGCAATCCCAGTGTGGGGAAAGTGGAGGCAGGAGGCCTCCTGGCC  149

seq1  TTGTCTCAGAAAGTAAGGCAATTTTAAAAAGCCACACAAACACATGCACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGAAAGTAAGGCAATTTTAAAAAGCCACACAAACACATGCACA  199

seq1  CACACACAACCACCATGACCACCACCAACAACAACAAGAAGCAATTTTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAACCACCATGACCACCACCAACAACAACAAGAAGCAATTTTGA  249

seq1  AATAAAGCCTGGCATTTTGATTTTTTTTCTTCTGACCTTGGATCTGAGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCTGGCATTTTGATTTTTTTTCTTCTGACCTTGGATCTGAGCA  299

seq1  ATCCTTCTCCCTCAGCTTCTCAAGTACCTGAGATCACAAGCTGTCCCATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCCCTCAGCTTCTCAAGTACCTGAGATCACAAGCTGTCCCATC  349

seq1  AGAGATTACAGGCCTAGCCTATCCCATCAGGGATCACAGGGCTACTAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACAGGCCTAGCCTATCCCATCAGGGATCACAGGGCTACTAGGG  399

seq1  AGGTCATTTAAGCTTCCTCTGATATAGTGTAAGACAACCAAAGACAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTTAAGCTTCCTCTGATATAGTGTAAGACAACCAAAGACAGAAA  449

seq1  CACAACAAAACACCAATTTAAAAAATGATAAAAGTTTTCTTTCATGAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAACACCAATTTAAAAAATGATAAAAGTTTTCTTTCATGAGCC  499

seq1  ACTTTTATTCCTTACCTGTATAAACTCTCCGAAGTCAAGGACTCTAAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTCCTTACCTGTATAAACTCTCCGAAGTCAAGGACTCTAAAAC  549

seq1  CATAGCTAGGATGTGCTTCAAGTTTCTATACTGTAATTCGGTCAGGATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTAGGATGTGCTTCAAGTTTCTATACTGTAATTCGGTCAGGATAT  599

seq1  CCAGCTGTTCTATGCCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTTCTATGCCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGC  649

seq1  TGCAGTCTGGCAATTTTCCCCTCGTCCCTGTCCTCAAAGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTGGCAATTTTCCCCTCGTCCCTGTCCTCAAAGAATTC  693