BAC Information

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BAC

Clone NameB6Ng01-227H14
Chromosome15 (Build37)
Map Location 66,903,274 - 67,042,574
singlet/doubletdoublet
Overlap geneSt3gal1
Upstream geneKcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667
Downstream geneZfat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227H14.bB6Ng01-227H14.g
ACCGA041135GA041136
length9471,093
definitionB6Ng01-227H14.b B6Ng01-227H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,903,274 - 66,904,218)(67,041,484 - 67,042,574)
sequence
gaattcagccctgcccagcaagaactctgccccaggagacctcggctggt
gagccaaacaagagtccacattaacacctttgtttttattgttttctttc
caaaatgccaaggcccattcagcaacagcccagacttgctccttgataat
gaagggcttttgacctgggagacctccagaaagcagctcttctctggaag
cagtaagaacacctgtaggagaagccaggctccaagtcttgccattgcct
ttccctatgatgagcctggtccaaaggtgcttatgagtgaggggggccat
cctcaatgacctcaagtctgcttattaaatagatgtctaacaactctaac
tctggttcttttgttatccaggaatttctcatctctaagtaattgctcaa
atatgtacttggctgatgatcttgggcaaagtgctacactcttaaaagat
tttcctatatttttattttatgcatatagatgttttgccttcacgtacat
ctatgcaccgtacaggaactcggtgccctcaaaggccaaaagctgttgaa
tcccttgggactggagttacagacagtggtgagctttcatgtgggtatgg
aaaattgaacccagatctcctggaaaagtagctgaattaaaaaaaaaaaa
atgaaataaaaggagatcatgactactcctaaagtacagtgaagattttt
tttttttttttttttttctgagacagggtttctctgtattgtcctggctg
tcctggaactcactttgtagaccaggctggctctcaaacgcagaaatccg
ccttgccctctgcctcccgagtgctgggatagagtgtgccaccatgccca
gctgaagatttttattgtagatctaagggggggaaaaaaaaaatcatccg
aaacccaaaaaacagtcagaagagatgagtccagctggaacactacc

gaattcattcccaattgccctgaaggctgacgggtatactccctgcccct
gctgtattgggctagatattgtgagcgtaagactgaaaacagacacaacc
atgttcacttcgcacaagcagccttcaagccaggaactgcccactgctcc
aaggttcaaaatcagccagcagctcccttgccctgcctgctcacaggcct
gggatttagccatgaggcaaggatgtgccagcaatcattacccacgtacc
gtcatgcccatgtccagctctccaaagaagagttactaaagatgtgttgg
ccacatggacaacattagcaaattatgtcctcattcccagtttttcttcc
atctgtctttgaaaaaacaaaacaaaaaaacaaaaaaacaaaaaaacaaa
tcaattattctagaataatgaaacagtttaataagacaatccacatgtgg
attctatgtgtttgaagtaccaggtatttttttttaaagccaaaaggaat
ttttaattgactacagggaatagcttgttgaacaattatccatttcccac
tttttcaaaaacccagctcaagctgcagtcaggagtacgtaaacaaatgg
tcgctccagctgcttcctgctcctgcaaaggcttcacactgaaccagact
tcaaaggggaagaggaaactcagcacctaggtgtgtgggctgaacagctc
agaaaatgcatgaattgctccctaaaactgcccaggtggatagaatgagc
ttgtgtcagtcattcggctgtttatgcaacaagataccatactgactatc
ccctttggataagactgctttcgcacaaccggtctagaaatgaccagcat
tcacggaatgcctggacagatacggaatcctactggccaagtggatgtca
cacataatgatgagcagcatcttgggaaagaaatgcaatatgcagaggag
gaagagagcagaccgatctggaggaagtgagcagccattcttgtgaggga
tcgtcttttcttgttagcggagctctcttagtactttcaaaacatacaga
atctctgagcatagactggtttaatcaattgttcattattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_66903274_66904218
seq2: B6Ng01-227H14.b_45_991

seq1  GAATTCAGCCCTGCCCAGCAAGAACTCTGCCCCAGGAGACCTCGGCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCTGCCCAGCAAGAACTCTGCCCCAGGAGACCTCGGCTGGT  50

seq1  GAGCCAAACAAGAGTCCACATTAACACCTTTGTTTTTATTGTTTTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACAAGAGTCCACATTAACACCTTTGTTTTTATTGTTTTCTTTC  100

seq1  CAAAATGCCAAGGCCCATTCAGCAACAGCCCAGACTTGCTCCTTGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCCAAGGCCCATTCAGCAACAGCCCAGACTTGCTCCTTGATAAT  150

seq1  GAAGGGCTTTTGACCTGGGAGACCTCCAGAAAGCAGCTCTTCTCTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTTTTGACCTGGGAGACCTCCAGAAAGCAGCTCTTCTCTGGAAG  200

seq1  CAGTAAGAACACCTGTAGGAGAAGCCAGGCTCCAAGTCTTGCCATTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAACACCTGTAGGAGAAGCCAGGCTCCAAGTCTTGCCATTGCCT  250

seq1  TTCCCTATGATGAGCCTGGTCCAAAGGTGCTTATGAGTGAGGGGGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATGATGAGCCTGGTCCAAAGGTGCTTATGAGTGAGGGGGGCCAT  300

seq1  CCTCAATGACCTCAAGTCTGCTTATTAAATAGATGTCTAACAACTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGACCTCAAGTCTGCTTATTAAATAGATGTCTAACAACTCTAAC  350

seq1  TCTGGTTCTTTTGTTATCCAGGAATTTCTCATCTCTAAGTAATTGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTTTTGTTATCCAGGAATTTCTCATCTCTAAGTAATTGCTCAA  400

seq1  ATATGTACTTGGCTGATGATCTTGGGCAAAGTGCTACACTCTTAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTTGGCTGATGATCTTGGGCAAAGTGCTACACTCTTAAAAGAT  450

seq1  TTTCCTATATTTTTATTTTATGCATATAGATGTTTTGCCTTCACGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATATTTTTATTTTATGCATATAGATGTTTTGCCTTCACGTACAT  500

seq1  CTATGCACCGTACAGGAACTCGGTGCCCTCAAAGGCCAAAAGCTGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACCGTACAGGAACTCGGTGCCCTCAAAGGCCAAAAGCTGTTGAA  550

seq1  TCCCTTGGGACTGGAGTTACAGACAGTGGTGAGCTTTCATGTGGGTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGGACTGGAGTTACAGACAGTGGTGAGCTTTCATGTGGGTATGG  600

seq1  AAAATTGAACCCAGATCTCCTGGAAAAGTAGCTGAATTAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAACCCAGATCTCCTGGAAAAGTAGCTGAATTAAAAAAAAAAAA  650

seq1  ATGAAATAAAAGGAGATCATGACTACTCCTAAAGTACAGTGAAGATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAAGGAGATCATGACTACTCCTAAAGTACAGTGAAGATTTTT  700

seq1  TTTTTTTTTTTTTTTTTCTGAGACAGGGTTTCTCTGTATTGTCCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTCTGAGACAGGGTTTCTCTGTATTGTCCTGGCTG  750

seq1  TCCTGGAACTCACTTTGTAGACCAGGCTGGC-CTCAAACGCAGAAATCCG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGGCTGGCTCTCAAACGCAGAAATCCG  800

seq1  CCT--GCCTCTGCCTCCCGAGTGCTGGGATTAGAGTGTGCCACCATGCCC  847
      |||   ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTGCCCTCTGCCTCCCGAGTGCTGGGA-TAGAGTGTGCCACCATGCCC  849

seq1  AGCTGAAGATTTTTATTGTAGATCTAAGGGGGGGAAAAAAAAAAACCAAC  897
      |||||||||||||||||||||||||||||||||| |||||||||| || |
seq2  AGCTGAAGATTTTTATTGTAGATCTAAGGGGGGG-AAAAAAAAAATCATC  898

seq1  CAAAAACCAAAAAACAAGCAG-AGAGATGAGTCCAGGCTGAACACTACC  945
      | ||| ||||||||||  ||| ||||||||||||||   ||||||||||
seq2  CGAAACCCAAAAAACAGTCAGAAGAGATGAGTCCAGCTGGAACACTACC  947


seq1: chr15_67041484_67042574
seq2: B6Ng01-227H14.g_65_1157 (reverse)

seq1  CAGAATAATGAAACCATTTGA-TAAAACAGTCTATGCTCAGAGATTCTGT  49
      ||||||||||||  || |||| |||| |||||||||||||||||||||||
seq2  CAGAATAATGAA--CAATTGATTAAACCAGTCTATGCTCAGAGATTCTGT  48

seq1  ATGTTT--GAAGTACT-AGAGAGCTCCCGCTAACA--GAAAGACGATCCC  94
      ||||||   ||||||| |||||||| |||||||||   ||||||||| ||
seq2  ATGTTTTGAAAGTACTAAGAGAGCT-CCGCTAACAAGAAAAGACGAT-CC  96

seq1  CTCACAAGAATGGCTGCTCACTTCCTCCAGATCTGTCTGCTCTCTTCCTC  144
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCACAAGAATGGCTGCTCACTTCCTCCAGATCGGTCTGCTCTCTTCCTC  146

seq1  CTCTGCATATTGCATTTCTTT-CCAAGATGCTGCTCATCATTATGTGGTG  193
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CTCTGCATATTGCATTTCTTTCCCAAGATGCTGCTCATCATTATGT-GTG  195

seq1  ACATCCACTTGGCCAGTAGGATTCCGTATCTGTCCAGGCATTCCGTGAAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACTTGGCCAGTAGGATTCCGTATCTGTCCAGGCATTCCGTGAAT  245

seq1  GCTGGTCATTTCTAGACCGGTTGTGCGAAAGCAGTCTTATCCAAAGGGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCATTTCTAGACCGGTTGTGCGAAAGCAGTCTTATCCAAAGGGGA  295

seq1  TAGTCAGTATGGTATCTTGTTGCATAAACAGCCGAATGACTGACACAAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTATGGTATCTTGTTGCATAAACAGCCGAATGACTGACACAAGC  345

seq1  TCATTCTATCCACCTGGGCAGTTTTAGGGAGCAATTCATGCATTTTCTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTATCCACCTGGGCAGTTTTAGGGAGCAATTCATGCATTTTCTGA  395

seq1  GCTGTTCAGCCCACACACCTAGGTGCTGAGTTTCCTCTTCCCCTTTGAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCAGCCCACACACCTAGGTGCTGAGTTTCCTCTTCCCCTTTGAAG  445

seq1  TCTGGTTCAGTGTGAAGCCTTTGCAGGAGCAGGAAGCAGCTGGAGCGACC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCAGTGTGAAGCCTTTGCAGGAGCAGGAAGCAGCTGGAGCGACC  495

seq1  ATTTGTTTACGTACTCCTGACTGCAGCTTGAGCTGGGTTTTTGAAAAAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTACGTACTCCTGACTGCAGCTTGAGCTGGGTTTTTGAAAAAGT  545

seq1  GGGAAATGGATAATTGTTCAACAAGCTATTCCCTGTAGTCAATTAAAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGGATAATTGTTCAACAAGCTATTCCCTGTAGTCAATTAAAAAT  595

seq1  TCCTTTTGGCTTTAAAAAAAAATACCTGGTACTTCAAACACATAGAATCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGGCTTTAAAAAAAAATACCTGGTACTTCAAACACATAGAATCC  645

seq1  ACATGTGGATTGTCTTATTAAACTGTTTCATTATTCTAGAATAATTGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGATTGTCTTATTAAACTGTTTCATTATTCTAGAATAATTGATT  695

seq1  TGTTTTTTTGTTTTTTTGTTTTTTTGTTTTGTTTTTTCAAAGACAGATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTGTTTTTTTGTTTTTTTGTTTTGTTTTTTCAAAGACAGATGG  745

seq1  AAGAAAAACTGGGAATGAGGACATAATTTGCTAATGTTGTCCATGTGGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACTGGGAATGAGGACATAATTTGCTAATGTTGTCCATGTGGCC  795

seq1  AACACATCTTTAGTAACTCTTCTTTGGAGAGCTGGACATGGGCATGACGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTTTAGTAACTCTTCTTTGGAGAGCTGGACATGGGCATGACGG  845

seq1  TACGTGGGTAATGATTGCTGGCACATCCTTGCCTCATGGCTAAATCCCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGGTAATGATTGCTGGCACATCCTTGCCTCATGGCTAAATCCCAG  895

seq1  GCCTGTGAGCAGGCAGGGCAAGGGAGCTGCTGGCTGATTTTGAACCTTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGCAGGCAGGGCAAGGGAGCTGCTGGCTGATTTTGAACCTTGG  945

seq1  AGCAGTGGGCAGTTCCTGGCTTGAAGGCTGCTTGTGCGAAGTGAACATGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGCAGTTCCTGGCTTGAAGGCTGCTTGTGCGAAGTGAACATGG  995

seq1  TTGTGTCTGTTTTCAGTCTTACGCTCACAATATCTAGCCCAATACAGCAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGTTTTCAGTCTTACGCTCACAATATCTAGCCCAATACAGCAG  1045

seq1  GGGCAGGGAGTATACCCGTCAGCCTTCAGGGCAATTGGGAATGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGAGTATACCCGTCAGCCTTCAGGGCAATTGGGAATGAATTC  1093


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