BAC Information

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BAC

Clone NameB6Ng01-227M04
Chromosome15 (Build37)6 (Build37)
Map Location 58,264,030 - 58,264,51293,653,740 - 93,654,807
singlet/doubletsingletsinglet
Overlap geneD15Ertd621e
Upstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231
Downstream geneEG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M04.bB6Ng01-227M04.g
ACCGA041347GA041348
length6361,057
definitionB6Ng01-227M04.b B6Ng01-227M04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,264,030 - 58,264,512)(93,653,740 - 93,654,807)
sequence
gaattccgctcgtgtcgagattaattcatatgataatccagttgtttgtt
atcatttaccaaaatgaaattgtatgttaaacttatagcaaactatttta
cacatgcacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgttttcattgacttgattccatatttcatttttttcttttatctgacac
ggccagtgtgagcagtttgagtctgtccactgggtacacaaagcgaattg
cattcctgtttgactctactctgactgcgttcttaatgatgggaaacctt
tcaccgggaagtggtatgctgggggtgtaacaacgtttctttaaagctga
gatataaagtcatttgctgctgtgcaaatgtctttaagattataacaggt
cctgaaagcagccagctgtgttacattcctgtgagcagtgtgagtgtcca
atgaggagtgaagcacacgctcacgttgcctgtccttcaattataatgta
ttaaaagaatagttaatgttgttagcagaaaaaaacgaaaagcgcagttt
aataatgtgcttctatttgcagaacttgaaaaggcacgcattcaccatgt
ttgaagtaggcaaactctcatatgattctctggaca
gaattcactagggcatgcttcagcctaagaacagagtctctggggattga
tgcgctccgaaataatcagtgttggtgtgtaatggtggcacgaatgcacg
tccattttctcaaaaggcaatgagaatgtagacagctttctagtgttcgt
gacttgaagcaaggtcattcaagaaggtggttaaagcctaattaaacata
aggagcctagacagtagcagtactgaagccacaggaagccctcagtgttc
acttagctttttgacatgtaaaacaccatgaaaaaaaaaaaaaagtgaaa
cccagagccaagcttccaccctttgaacccaaagcagccgcgaccttttc
tgtgatgctgaattgaacatcccttaccagtcacaatgaagttaaaatgg
actaagaaagaacacatattaagctttacacaattgtgaaattgatattc
cagctatgtcaccttcgcctgcatcaggattgagcaagggtgaaagagac
agagaaatcaattccacgaattttggagaatgtcagagtaaggatctgct
gcaaacttttgctccttcattgtcatccatcctgtttgatgttcccatct
gtctggggagaagtccactgaagcaagggaagagaaaagtgcatgtattg
gccaagcataagccaggcatcagatgagattagggggtgacgtgtgtgtt
ttcacggtctgtgccagtggtgacaccagggcctggtgacccacttgcac
tacacttcaaggaaagtcattctgctactttgttaagtgaccgcgaccaa
taccagaagcagattagctacagagattgccccctaggtgaggatttaag
atgcacacagatggatcagagctataagttctgtaagactggcctcacta
aaatactaacagtaattaaaaaaaatagtaattggggaaatggcctcacc
ttgctgctctctaaaatacacttgaagtagagagtgaaacattggggaag
taaccttggtacttttttaccaaggactattatcatagaagattaaaatt
tgaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_58264030_58264512
seq2: B6Ng01-227M04.b_197_679

seq1  TTTCATTGACTTGATTCCATATTTCATTTTTTTCTTTCAGCTGACACGGC  50
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  TTTCATTGACTTGATTCCATATTTCATTTTTTTCTTTTATCTGACACGGC  50

seq1  CAGTGTGAGCAGTTTGAGTCTGTCCACTGGGTACACAAAGCGAATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAGCAGTTTGAGTCTGTCCACTGGGTACACAAAGCGAATTGCAT  100

seq1  TCCTGTTTGACTCCACTCTGACTGCATTCTTAATGATGGGAAACCTTTCA  150
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TCCTGTTTGACTCTACTCTGACTGCGTTCTTAATGATGGGAAACCTTTCA  150

seq1  CCGGTGAGTGGTATGCTGTGGGTGTAACGAGGTTTCAGTAAAGATAAGAT  200
      ||||  |||||||||||| ||||||||| | |||||  ||||| | ||||
seq2  CCGGGAAGTGGTATGCTGGGGGTGTAACAACGTTTCTTTAAAGCTGAGAT  200

seq1  ATAAAGTCATTTGCTGCTGTGCAAATGTCTTTAAGATTAGAACAGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAAGTCATTTGCTGCTGTGCAAATGTCTTTAAGATTATAACAGGTCCT  250

seq1  GAAAGCAGCCAGCTGTGTTACATTCCTGTGAGCAGTGTGAGTGTCCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCCAGCTGTGTTACATTCCTGTGAGCAGTGTGAGTGTCCAATG  300

seq1  AGGAGTGAAGCACACGCTCACGTTGCCTGTCCTTCAGTTTTAATGTAGTA  350
      |||||||||||||||||||||||||||||||||||| || ||||||| ||
seq2  AGGAGTGAAGCACACGCTCACGTTGCCTGTCCTTCAATTATAATGTATTA  350

seq1  GAAGCATAGTAAATGTTGTTAGCATAAAAAAAGGAAAAGCAGAGTTTAAT  400
       ||| ||||| ||||||||||||| ||||||| |||||||  ||||||||
seq2  AAAGAATAGTTAATGTTGTTAGCAGAAAAAAACGAAAAGCGCAGTTTAAT  400

seq1  AATGTGCTTCTTTTTGCAGAACTTGAAAAGCCACGCAGTCACCATGTTTG  450
      ||||||||||| |||||||||||||||||| |||||| ||||||||||||
seq2  AATGTGCTTCTATTTGCAGAACTTGAAAAGGCACGCATTCACCATGTTTG  450

seq1  AAGTAGGCAAACTCTCAGATGAGTCTCTGGACA  483
      ||||||||||||||||| |||| ||||||||||
seq2  AAGTAGGCAAACTCTCATATGATTCTCTGGACA  483

seq1: chr6_93653740_93654807
seq2: B6Ng01-227M04.g_69_1125 (reverse)

seq1  GTATTCAAATTTT-ATCTTCTATGATATTAGTTCTTTGTATAAAAAGTAC  49
      ||||||||||||| ||||||||||||| |||| ||| ||| |||||||||
seq2  GTATTCAAATTTTAATCTTCTATGATAATAGTCCTTGGTA-AAAAAGTAC  49

seq1  CAAGGTTTACTTCCCCCAAATGTTTTCACTCTCTACTTTCAAAGGTTGTA  99
      ||||| ||||||||||  |||| ||||||||||||| |||||    ||||
seq2  CAAGG-TTACTTCCCC--AATG-TTTCACTCTCTAC-TTCAA---GTGTA  91

seq1  TTTTAGAGAGCAGCAAGGTGAGGCCATTTTCCCCAAATTACTATTTTTTT  149
      |||||||||||||||||||||||||||||  ||| |||||||| ||||||
seq2  TTTTAGAGAGCAGCAAGGTGAGGCCATTT--CCCCAATTACTA-TTTTTT  138

seq1  TTAATTACTGTTAGTATTTTAGTGAGGCCAGTCTTACAGAACTTATAGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTGTTAGTATTTTAGTGAGGCCAGTCTTACAGAACTTATAGCT  188

seq1  CTGATCCATCTGTGTGCATCTTAAATCCTCACCTAGGGGGCAATCTCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCATCTGTGTGCATCTTAAATCCTCACCTAGGGGGCAATCTCTGT  238

seq1  AGCTAATCTGCTTCTGGTATTGGTCGCGGTCACTTAACAAAGTAGCAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCTGCTTCTGGTATTGGTCGCGGTCACTTAACAAAGTAGCAGAA  288

seq1  TGACTTTCCTTGAAGTGTAGTGCAAGTGGGTCACCAGGCCCTGGTGTCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCTTGAAGTGTAGTGCAAGTGGGTCACCAGGCCCTGGTGTCAC  338

seq1  CACTGGCACAGACCGTGAAAACACACACGTCACCCCCTAATCTCATCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACAGACCGTGAAAACACACACGTCACCCCCTAATCTCATCTGA  388

seq1  TGCCTGGCTTATGCTTGGCCAATACATGCACTTTTCTCTTCCCTTGCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTTATGCTTGGCCAATACATGCACTTTTCTCTTCCCTTGCTTC  438

seq1  AGTGGACTTCTCCCCAGACAGATGGGAACATCAAACAGGATGGATGACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTTCTCCCCAGACAGATGGGAACATCAAACAGGATGGATGACAA  488

seq1  TGAAGGAGCAAAAGTTTGCAGCAGATCCTTACTCTGACATTCTCCAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGCAAAAGTTTGCAGCAGATCCTTACTCTGACATTCTCCAAAAT  538

seq1  TCGTGGAATTGATTTCTCTGTCTCTTTCACCCTTGCTCAATCCTGATGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGAATTGATTTCTCTGTCTCTTTCACCCTTGCTCAATCCTGATGCA  588

seq1  GGCGAAGGTGACATAGCTGGAATATCAATTTCACAATTGTGTAAAGCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAGGTGACATAGCTGGAATATCAATTTCACAATTGTGTAAAGCTTA  638

seq1  ATATGTGTTCTTTCTTAGTCCATTTTAACTTCATTGTGACTGGTAAGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTCTTTCTTAGTCCATTTTAACTTCATTGTGACTGGTAAGGGA  688

seq1  TGTTCAATTCAGCATCACAGAAAAGGTCGCGGCTGCTTTGGGTTCAAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTCAGCATCACAGAAAAGGTCGCGGCTGCTTTGGGTTCAAAGG  738

seq1  GTGGAAGCTTGGCTCTGGGTTTCACTTTTTTTTTTTTTTCATGGTGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCTTGGCTCTGGGTTTCACTTTTTTTTTTTTTTCATGGTGTTTT  788

seq1  ACATGTCAAAAAGCTAAGTGAACACTGAGGGCTTCCTGTGGCTTCAGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCAAAAAGCTAAGTGAACACTGAGGGCTTCCTGTGGCTTCAGTAC  838

seq1  TGCTACTGTCTAGGCTCCTTATGTTTAATTAGGCTTTAACCACCTTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGTCTAGGCTCCTTATGTTTAATTAGGCTTTAACCACCTTCTTG  888

seq1  AATGACCTTGCTTCAAGTCACGAACACTAGAAAGCTGTCTACATTCTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTTGCTTCAAGTCACGAACACTAGAAAGCTGTCTACATTCTCAT  938

seq1  TGCCTTTTGAGAAAATGGACGTGCATTCGTGCCACCATTACACACCAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTGAGAAAATGGACGTGCATTCGTGCCACCATTACACACCAACA  988

seq1  CTGATTATTTCGGAGCGCATCAATCCCCAGAGACTCTGTTCTTAGGCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATTTCGGAGCGCATCAATCCCCAGAGACTCTGTTCTTAGGCTGA  1038

seq1  AGCATGCCCTAGTGAATTC  1068
      |||||||||||||||||||
seq2  AGCATGCCCTAGTGAATTC  1057