BAC Information

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BAC

Clone NameB6Ng01-228A07
Chromosome15 (Build37)
Map Location 19,264,928 - 19,367,378
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A07.bB6Ng01-228A07.g
ACCGA041536GA041537
length1,073982
definitionB6Ng01-228A07.b B6Ng01-228A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,264,928 - 19,265,987)(19,366,826 - 19,367,378)
sequence
gaattccatgatagcctctccctccacaggatcctccttaggatctctcc
accacagaatcatggtgcaggggtcctaaggcctccctcccctccatgtt
tgccttttgcttgggagctcccaagggttcaggtgagttgcttctgttga
gaggaaaatggatcacttgccacaagaatgcagtcaaggatagagcatgg
gaacataactccagcagagagagctggaggaatactaaaatgcaagtatc
ttggggattttggctggtaggttgccagattagattatcagattaaaata
gattagcactgctcagctcttgtgcatgattaaataaatcttacagtctc
tcgtttccttgggagctagttgggagagagaaaaaccgccacttttcaaa
ttttagtaacatgctagcaaggtgggatcgaacaagtaaagagataaaat
ttttcttctcccaaatcctcacatgtaggcttccagcagaaggcatggtc
cagattcgatcttaattaaagatctggattaaaggtgtgtcttcctactt
caaagatttggacctttccacttcaaattaagtagacgggatttcacatg
tgtgtcctcgacttttttgggtctagataactccagatgaaatcaagctg
atagctaagaatgctccttgtgtgtcttgtcacctctggattgcatatgc
ttcctatacacttcttgtgcactgctttgctaaagtagattctgtgcaac
aatcacaacacagacaattaaggttttgaaattgctgcaatttatgatcc
tattcaatccaagcttaattcgatgtgaccatatagaaaaaataatagga
tgggcttgacagttgaccccattttaaagtccacatttggataattttaa
tctatttccgtttttttatggttttgtgaagtttgggtgttgatctacag
gctttctccactactcccaattcctctaattctcactatcggtgtccttc
tctttttcactgcctcagttctagaattcctgttgggctttcattcattg
tcatgggtcaaacttacccaaag
gaattcaactgagactggctaagaatgcaaggagcagttatatagcttgg
aatctaatttttctgtccagatcctttccaggaaccagctttccttgttg
aaactcagcaaccaaactttcaggattaaattctgactacccttgctgtt
gctgaagcaagaaagggagaaatcttgggtgaaaaaagcattgaaaagct
aaaacaaaatgaactatacctgtcagaaggttcaaaactaatacccacta
atgagaggtatcatttgaggtttatctaaaagcatgtggacggcatcatt
taaagtgattctttccacttctatacactttcaatgtgaatttcaatttt
tcattcttattagcagccaaataaaatttcattgtaggcagatcagcatg
cctactccacaaacctggctgtctcccaggaagtctgctctaacctgggg
cacagagaccagtagatgtgggttctgtcatgctctgccagagccctata
gcccctcctttctgcacctacacctatacctgtggtagactggcctgctt
gtttccccatcctatgcccattcctgttaccatggaggtctgctctaacc
agagatagagctgtctccctgtaggcttgctttaacctgggacaaacagt
tccacttgtctccaaggagactaggaaaatcagttaaccctgagccagtt
aacaccagagatagacatggcaaaaggcaactacaagatcataatcaaca
ggagccaatacaaaccgacacaatcagaagaacccagctccactaccaca
acaaaggctggatatgctaacacacctgaagaaagattctggcctttatc
ccatctcataaaatgataaaaggctttgaggaagattataaaagtttccc
ttgaagaaatacagaaatacacaagccaacaggtagaagtccctcaaaca
gaaaacaaatgccaccccctgaaagaaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19264928_19265987
seq2: B6Ng01-228A07.b_45_1117

seq1  GAATTCCATGATAGCCTCTCCCTCCACAGGATCCTCCTTAGGATCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATAGCCTCTCCCTCCACAGGATCCTCCTTAGGATCTCTCC  50

seq1  ACCACAGAATCATGGTGCAGGGGTCCTAAGGCCTCCCTCCCCTCCATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAATCATGGTGCAGGGGTCCTAAGGCCTCCCTCCCCTCCATGTT  100

seq1  TGCCTTTTGCTTGGGAGCTCCCAAGGGTTCAGGTGAGTTGCTTCTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTGCTTGGGAGCTCCCAAGGGTTCAGGTGAGTTGCTTCTGTTGA  150

seq1  GAGGAAAATGGATCACTTGCCACAAGAATGCAGTCAAGGATAGAGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGGATCACTTGCCACAAGAATGCAGTCAAGGATAGAGCATGG  200

seq1  GAACATAACTCCAGCAGAGAGAGCTGGAGGAATACTAAAATGCAAGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAACTCCAGCAGAGAGAGCTGGAGGAATACTAAAATGCAAGTATC  250

seq1  TTGGGGATTTTGGCTGGTAGGTTGCCAGATTAGATTATCAGATTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATTTTGGCTGGTAGGTTGCCAGATTAGATTATCAGATTAAAATA  300

seq1  GATTAGCACTGCTCAGCTCTTGTGCATGATTAAATAAATCTTACAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCACTGCTCAGCTCTTGTGCATGATTAAATAAATCTTACAGTCTC  350

seq1  TCGTTTCCTTGGGAGCTAGTTGGGAGAGAGAAAAACCGCCACTTTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCCTTGGGAGCTAGTTGGGAGAGAGAAAAACCGCCACTTTTCAAA  400

seq1  TTTTAGTAACATGCTAGCAAGGTGGGATCGAACAAGTAAAGAGATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAACATGCTAGCAAGGTGGGATCGAACAAGTAAAGAGATAAAAT  450

seq1  TTTTCTTCTCCCAAATCCTCACATGTAGGCTTCCAGCAGAAGGCATGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTCCCAAATCCTCACATGTAGGCTTCCAGCAGAAGGCATGGTC  500

seq1  CAGATTCGATCTTAATTAAAGATCTGGATTAAAGGTGTGTCTTCCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCGATCTTAATTAAAGATCTGGATTAAAGGTGTGTCTTCCTACTT  550

seq1  CAAAGATTTGGACCTTTCCACTTCAAATTAAGTAGACGGGATTTCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTGGACCTTTCCACTTCAAATTAAGTAGACGGGATTTCACATG  600

seq1  TGTGTCCTCGAC-TTTTTGGGTCTAGATAACTCCAGATGAAATCAAGCTG  649
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCGACTTTTTTGGGTCTAGATAACTCCAGATGAAATCAAGCTG  650

seq1  ATAGCTAAGAATGCTCCTTGTGTGTCTTGTCACCTCTGGATTGCATATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAGAATGCTCCTTGTGTGTCTTGTCACCTCTGGATTGCATATGC  700

seq1  TTCCTATACACTTCTTGTGCACTGCTTTGCTAAAGTAGATTCTGTGCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATACACTTCTTGTGCACTGCTTTGCTAAAGTAGATTCTGTGCAAC  750

seq1  AATCACAACACAGACAATTAAGGTTTTGAAATTGCTGCAATTTATGATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAACACAGACAATTAAGGTTTTGAAATTGCTGCAATTTATGATCC  800

seq1  TATTCAATCCAAGCTTAATTCGATGTGACCATATAGAAAAAATAATAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATCCAAGCTTAATTCGATGTGACCATATAGAAAAAATAATAGGA  850

seq1  TGGGC-TGACAGTTGACCCCATTTTAAAGTCCACATTTGGATAATTTTAA  898
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGACAGTTGACCCCATTTTAAAGTCCACATTTGGATAATTTTAA  900

seq1  TCTATTTCCG-TTTTTTATGGTTTTGTGAAGTTTTGGTGTTGATCTACAG  947
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  TCTATTTCCGTTTTTTTATGGTTTTGTGAAGTTTGGGTGTTGATCTACAG  950

seq1  GCTTTCTCCACTACTCCC-ATTCCTCT-ATTCTCACTATTCGGTGTCC-T  994
      |||||||||||||||||| |||||||| |||||||||| ||||||||| |
seq2  GCTTTCTCCACTACTCCCAATTCCTCTAATTCTCACTA-TCGGTGTCCTT  999

seq1  CTCTTTTTCACTGCCTCAGTTCTAGAAT--CTG-TGGGCTTTCA-TCA-T  1039
      ||||||||||||||||||||||||||||  ||| |||||||||| ||| |
seq2  CTCTTTTTCACTGCCTCAGTTCTAGAATTCCTGTTGGGCTTTCATTCATT  1049

seq1  GTCAT-GGTC-AACTTA-CCAAAG  1060
      ||||| |||| |||||| ||||||
seq2  GTCATGGGTCAAACTTACCCAAAG  1073

seq1: chr15_19366826_19367378
seq2: B6Ng01-228A07.g_69_621 (reverse)

seq1  AACAAGCAGGCCAGTCTACCACAGGTATAGGTGTAGGTGCAGAAAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAGGCCAGTCTACCACAGGTATAGGTGTAGGTGCAGAAAGGAGG  50

seq1  GGCTATAGGGCTCTGGCAGAGCATGACAGAACCCACATCTACTGGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGGGCTCTGGCAGAGCATGACAGAACCCACATCTACTGGTCTCT  100

seq1  GTGCCCCAGGTTAGAGCAGACTTCCTGGGAGACAGCCAGGTTTGTGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCAGGTTAGAGCAGACTTCCTGGGAGACAGCCAGGTTTGTGGAGT  150

seq1  AGGCATGCTGATCTGCCTACAATGAAATTTTATTTGGCTGCTAATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCTGATCTGCCTACAATGAAATTTTATTTGGCTGCTAATAAGAA  200

seq1  TGAAAAATTGAAATTCACATTGAAAGTGTATAGAAGTGGAAAGAATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTGAAATTCACATTGAAAGTGTATAGAAGTGGAAAGAATCACT  250

seq1  TTAAATGATGCCGTCCACATGCTTTTAGATAAACCTCAAATGATACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATGCCGTCCACATGCTTTTAGATAAACCTCAAATGATACCTCT  300

seq1  CATTAGTGGGTATTAGTTTTGAACCTTCTGACAGGTATAGTTCATTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGGGTATTAGTTTTGAACCTTCTGACAGGTATAGTTCATTTTGT  350

seq1  TTTAGCTTTTCAATGCTTTTTTCACCCAAGATTTCTCCCTTTCTTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTTCAATGCTTTTTTCACCCAAGATTTCTCCCTTTCTTGCTTC  400

seq1  AGCAACAGCAAGGGTAGTCAGAATTTAATCCTGAAAGTTTGGTTGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGCAAGGGTAGTCAGAATTTAATCCTGAAAGTTTGGTTGCTGAG  450

seq1  TTTCAACAAGGAAAGCTGGTTCCTGGAAAGGATCTGGACAGAAAAATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAAGGAAAGCTGGTTCCTGGAAAGGATCTGGACAGAAAAATTAG  500

seq1  ATTCCAAGCTATATAACTGCTCCTTGCATTCTTAGCCAGTCTCAGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGCTATATAACTGCTCCTTGCATTCTTAGCCAGTCTCAGTTGAA  550

seq1  TTC  553
      |||
seq2  TTC  553