BAC Information

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BAC

Clone NameB6Ng01-228A10
Chromosome15 (Build37)
Map Location 47,307,861 - 47,458,891
singlet/doubletdoublet
Overlap geneLOC100039493, Csmd3
Upstream geneLOC100039438, LOC665130, LOC100039485
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A10.bB6Ng01-228A10.g
ACCGA041542GA041543
length1,163801
definitionB6Ng01-228A10.b B6Ng01-228A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,307,861 - 47,309,030)(47,458,096 - 47,458,891)
sequence
gaattcaggactttcgctccttccattggcttcctatatatctttttcca
tatagccaatcagggtttcagtacatactgctaaggtttgagtatattag
ggatttggacaagcttctggaaaatcataaaaataacttaaagtttgaat
taagtcacttgtgtgtataaaaaaaaaagccagggctggcaagatggctc
agtgggtaagagcacccgactgctcttccgaaggtccggagttcaaatcc
cagcaaccacatggtggctcacaaccatccgtaacgagatctgactccct
cttctggagtgtctgaagacagctacagtgtacttacatataataaataa
ataaatctaaaaaaaaaaaaaaaaaaaaagccagcattggtggcacatgt
ctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcga
ggccagcctggtctacagagtgagttccaggacagccagagctatacaga
gaaaccctgtctcgaaaaaccaaaaaacaaaacaaaactaaactaaaact
aaaactaaaactaaaactaaaactaaaactaaaactaaaactaaaactaa
aactaaaactaaaactaaaactaaaacaaacaaacaagcaaaccaaacaa
aaaaccaaagacaaagcattgcaagaagtgacaaaagatttggttgaatc
tctgatgccctcaaagagttatctccctagaagtagttggccagagatgc
ccctgtagatgaccacaagacacaatatttttggacattgctattggtgt
catgtcataaatagatggtaaaactatagtataatactgtatacactgtg
tagtgtggactgctccctgtataataaaaaaatcaggagaaaatgacttt
aaaccctcccaattgtgtgttactgggtagtgtcatgaatccccatgcat
gctgttgagaaagatttaccaacaatattttcttagcttgtaggggcaat
acatacaccaaacccaggcttcaactagatgtgaaaaaattaaattggga
gaattacttaattcttgtaaccctaaggaggagtggaacaaagactgtag
agcttagcaaggttgatgttacaactgtttgctctggaactgaacaattc
caagaaagagaaa

gaattccaggactgtgaagcaaggagtgagtgggtgggtgcgggaacaac
ctcatagaagcaggggatggcaggatggaatagggagttttcagagggga
aaccagaaatggggattgcgtttgaaatgtaaataaagaaaatatctaat
aaaaattttcaaaaaaaataaaaagtaagaaagaagaaaaaagaaatttg
cactctaaaattctacaataaaacaatgaaggaactgatagtatttcaat
atggatatgtaattgaattaacatccatgctttacatttcttcttattca
aggaagtgacccctgtgtagagtcttgtaacgttctacattgttctagac
ttgtattgcataggtcaaaagcagagaaatggcagcattcgaggacttcc
tgactatgtagaactcagtgctacacaataattagtttattaattaagta
tttattgatattccaaatgttgattcccttcctggcatcccttgagaagt
tcttcaccctttcctcctaagagggtgctcccgcacccaacctcccccac
tttatcctgctctatccccctttccaggggcatcaagtgttttggaatca
ctggccaatgagaatgaaagacacaagatgctttaaaagcacaatcaaaa
cgatttctaaggagattggttatacctaggacatagaagtctgatgtatc
actaggattcatgtgacagagctttactatttatagaactaatttattct
cttttctccatctctctgtctgtctctgtctcccctctcttttctttaat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47307861_47309030
seq2: B6Ng01-228A10.b_47_1209

seq1  GAATTCAGGACTTTCGCTCCTTCCATTGGCTTCCTATATATCTTTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTTTCGCTCCTTCCATTGGCTTCCTATATATCTTTTTCCA  50

seq1  TATAGCCAATCAGGGTTTCAGTACATACTGCTAAGGTTTGAGTATATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAATCAGGGTTTCAGTACATACTGCTAAGGTTTGAGTATATTAG  100

seq1  GGATTTGGACAAGCTTCTGGAAAATCATAAAAATAACTTAAAGTTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGACAAGCTTCTGGAAAATCATAAAAATAACTTAAAGTTTGAAT  150

seq1  TAAGTCACTTGTGTGTATAAAAAAAAAAGCCAGGGCTGGCAAGATGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACTTGTGTGTATAAAAAAAAAAGCCAGGGCTGGCAAGATGGCTC  200

seq1  AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCC  250

seq1  CAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCT  300

seq1  CTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA  350

seq1  ATAAATCTAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGGTGGCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGGTGGCACATGT  400

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  450

seq1  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGA  500

seq1  GAAACCCTGTCTCGAAAAACCAAAAAACAAAACAAAACTAAACTAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAACCAAAAAACAAAACAAAACTAAACTAAAACT  550

seq1  AAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAAAACTAA  600

seq1  AACTAAAACTAAAACTAAAACTAAAACAAACAAACAAGCAAACCAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACTAAAACTAAAACTAAAACAAACAAACAAGCAAACCAAACAA  650

seq1  AAAACCAAAGACAAAGCATTGCAAGAAGTGACAAAAGATTTGGTTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAGACAAAGCATTGCAAGAAGTGACAAAAGATTTGGTTGAATC  700

seq1  TCTGATGCCCTCAAAGAGTTATCTCCCTAGAAGTAGTTGGCCAGAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCAAAGAGTTATCTCCCTAGAAGTAGTTGGCCAGAGATGC  750

seq1  CCCTGTAGATGACCACAAGACACAATATTTTTGGACATTGCTATTGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGATGACCACAAGACACAATATTTTTGGACATTGCTATTGGTGT  800

seq1  CATGTCATAAATAGATGGTAAAACTATAGTATAATACTGTATACACTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATAAATAGATGGTAAAACTATAGTATAATACTGTATACACTGTG  850

seq1  TAGTGTGGACTGCTCCCTGTATAATAAAAAAATCAGGAGAAAAATGACTT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGTGTGGACTGCTCCCTGTATAATAAAAAAATCAGGAG-AAAATGACTT  899

seq1  TAAAACCTTCCCAATTGTGTGTTACT-GGTAGTGTCATGAATCCCCATGC  949
      | ||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  T-AAACCCTCCCAATTGTGTGTTACTGGGTAGTGTCATGAATCCCCATGC  948

seq1  ATGCTGTTGAGAAAGAATTACCAACAATA-TTTCTTAGC-TGTAGGGGCA  997
      |||||||||||||||| |||||||||||| ||||||||| ||||||||||
seq2  ATGCTGTTGAGAAAGATTTACCAACAATATTTTCTTAGCTTGTAGGGGCA  998

seq1  ATACATACACC-AACCCAGGC-TCAACTAGATGTGAAAAAAATAAAATTG  1045
      ||||||||||| ||||||||| ||||||||||||||||||| |||| | |
seq2  ATACATACACCAAACCCAGGCTTCAACTAGATGTGAAAAAATTAAATTGG  1048

seq1  GAGATTTACATTATATCTTGTAACCCTAAGGAGGAAGTGACAAAAGACTG  1095
      |||| |||| |||  ||||||||||||||||||||   ||  ||||||||
seq2  GAGAATTAC-TTAATTCTTGTAACCCTAAGGAGGAGTGGAACAAAGACTG  1097

seq1  TAAGAGCTAGGCAAAGGGGTGATTGTTACCCAGCTGTTTGCTCTGG-ACT  1144
      | ||||||  ||||  || ||| |||||  || ||||||||||||| |||
seq2  T-AGAGCTTAGCAA--GGTTGA-TGTTA--CAACTGTTTGCTCTGGAACT  1141

seq1  GAAACATATTCTCAAGAAAAGAGAAA  1170
      | |||| |||| |||| |||||||||
seq2  G-AACA-ATTC-CAAG-AAAGAGAAA  1163


seq1: chr15_47458096_47458891
seq2: B6Ng01-228A10.g_66_866 (reverse)

seq1  AATTAAAG-AAAGAGA-GGGAGACAGAGACAGACAGAGAGATGGAG-AAA  47
      |||||||| ||||||| ||||||||||||||||||||||||||||| |||
seq2  AATTAAAGAAAAGAGAGGGGAGACAGAGACAGACAGAGAGATGGAGAAAA  50

seq1  GAGAAT-AATTAGTTCTAT-AATAGTAAAGCTCTGTCACATGAATCCTAG  95
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAATAAATTAGTTCTATAAATAGTAAAGCTCTGTCACATGAATCCTAG  100

seq1  TGATACATCAGACTTCTATGTCCTAGGTATAACCAATCTCCTTAGAAATC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATCAGACTTCTATGTCCTAGGTATAACCAATCTCCTTAGAAATC  150

seq1  GTTTTGATTGTGCTTTTAAAGCATCTTGTGTCTTTCATTCTCATTGGCCA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTGTGCTTTTAAAGCATCTTGTGTCTTTCATTCTCATTGGCCA  200

seq1  GTGATTCCAAAACACTTGATGCCCCTGGAAAGGGGGATAGAGCAGGATAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCAAAACACTTGATGCCCCTGGAAAGGGGGATAGAGCAGGATAA  250

seq1  AGTGGGGGAGGTTGGGTGCGGGAGCACCCTCTTAGGAGGAAAGGGTGAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGAGGTTGGGTGCGGGAGCACCCTCTTAGGAGGAAAGGGTGAAG  300

seq1  AACTTCTCAAGGGATGCCAGGAAGGGAATCAACATTTGGAATATCAATAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCAAGGGATGCCAGGAAGGGAATCAACATTTGGAATATCAATAA  350

seq1  ATACTTAATTAATAAACTAATTATTGTGTAGCACTGAGTTCTACATAGTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATTAATAAACTAATTATTGTGTAGCACTGAGTTCTACATAGTC  400

seq1  AGGAAGTCCTCGAATGCTGCCATTTCTCTGCTTTTGACCTATGCAATACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCCTCGAATGCTGCCATTTCTCTGCTTTTGACCTATGCAATACA  450

seq1  AGTCTAGAACAATGTAGAACGTTACAAGACTCTACACAGGGGTCACTTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAACAATGTAGAACGTTACAAGACTCTACACAGGGGTCACTTCC  500

seq1  TTGAATAAGAAGAAATGTAAAGCATGGATGTTAATTCAATTACATATCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGAAGAAATGTAAAGCATGGATGTTAATTCAATTACATATCCA  550

seq1  TATTGAAATACTATCAGTTCCTTCATTGTTTTATTGTAGAATTTTAGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATACTATCAGTTCCTTCATTGTTTTATTGTAGAATTTTAGAGT  600

seq1  GCAAATTTCTTTTTTCTTCTTTCTTACTTTTTATTTTTTTTGAAAATTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTCTTTTTTCTTCTTTCTTACTTTTTATTTTTTTTGAAAATTTT  650

seq1  TATTAGATATTTTCTTTATTTACATTTCAAACGCAATCCCCATTTCTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATATTTTCTTTATTTACATTTCAAACGCAATCCCCATTTCTGGT  700

seq1  TTCCCCTCTGAAAACTCCCTATTCCATCCTGCCATCCCCTGCTTCTATGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTGAAAACTCCCTATTCCATCCTGCCATCCCCTGCTTCTATGA  750

seq1  GGTTGTTCCCGCACCCACCCACTCACTCCTTGCTTCACAGTCCTGGAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCCCGCACCCACCCACTCACTCCTTGCTTCACAGTCCTGGAATT  800

seq1  C  796
      |
seq2  C  801


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