BAC Information

Click to search

BAC

Clone NameB6Ng01-228O07
Chromosome15 (Build37)
Map Location 93,877,319 - 93,999,108
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
Downstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228O07.bB6Ng01-228O07.g
ACCGA042186GA042187
length643279
definitionB6Ng01-228O07.b B6Ng01-228O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,998,466 - 93,999,108)(93,877,319 - 93,877,597)
sequence
gaattcttttctgggattctgtggagagcagaggaagccctgaatgtgta
ggcctgaatgaatgtgtgttgatggcatggccaaggtcatatcaaggact
ggttcagctcaaactcatgttaatggcaaagccttcccccttgggtgagc
cttcaagggatggcaaagccttccttgggggtcttggggtcaacattcac
agcctatgcagaaagtatccaccatagctttctcattccttatttctgat
atttatggcttgactactctcctaccgagactgctcttattaagattagc
taagcctgtctcctgtttccagctgtataccataactttcctgcttgttt
atcagtctgtaatgaccccacctccttgttcagctgcttgcaataaactc
tcttttgtatttaagtatatataatgaagatgttgaactttatgggtgct
gtagtttctccatcagagaaccttgtctgtctaataccagttctctgtct
cttatttgtttgtctcttcttcaattccctcgatgctcctacccaggttc
atccctagagacacatgtggagaccattaatgtgggagaagacatgtttt
gtttaattgtttttttgttggtggtggtagtagaggggacagg
tttctttctcttgggctttgagagtcactggaggaactgcacgttaaaaa
cctgtgggtccagatgcctgtgtgggtttcttctagctcttgttccatct
ccaaatttcaatttccaaagtatttaatctctaaaaggtattcaaaaggt
tctggttttaaaaacattttttttccctcttcctgaggtgagccaaatag
aatagatacttagagatagatggtaggatttaggactgtaatgtaaggat
caaatagagagggggaggggacgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93998466_93999108
seq2: B6Ng01-228O07.b_46_688 (reverse)

seq1  CCTGTCCCCTCTACTACCACCACCAACAAAAAAACAATTAAACAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCCTCTACTACCACCACCAACAAAAAAACAATTAAACAAAACAT  50

seq1  GTCTTCTCCCACATTAATGGTCTCCACATGTGTCTCTAGGGATGAACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCCACATTAATGGTCTCCACATGTGTCTCTAGGGATGAACCTG  100

seq1  GGTAGGAGCATCGAGGGAATTGAAGAAGAGACAAACAAATAAGAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGCATCGAGGGAATTGAAGAAGAGACAAACAAATAAGAGACAGA  150

seq1  GAACTGGTATTAGACAGACAAGGTTCTCTGATGGAGAAACTACAGCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTATTAGACAGACAAGGTTCTCTGATGGAGAAACTACAGCACCC  200

seq1  ATAAAGTTCAACATCTTCATTATATATACTTAAATACAAAAGAGAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTCAACATCTTCATTATATATACTTAAATACAAAAGAGAGTTTA  250

seq1  TTGCAAGCAGCTGAACAAGGAGGTGGGGTCATTACAGACTGATAAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCAGCTGAACAAGGAGGTGGGGTCATTACAGACTGATAAACAAG  300

seq1  CAGGAAAGTTATGGTATACAGCTGGAAACAGGAGACAGGCTTAGCTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGTTATGGTATACAGCTGGAAACAGGAGACAGGCTTAGCTAATC  350

seq1  TTAATAAGAGCAGTCTCGGTAGGAGAGTAGTCAAGCCATAAATATCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGAGCAGTCTCGGTAGGAGAGTAGTCAAGCCATAAATATCAGAA  400

seq1  ATAAGGAATGAGAAAGCTATGGTGGATACTTTCTGCATAGGCTGTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAATGAGAAAGCTATGGTGGATACTTTCTGCATAGGCTGTGAATG  450

seq1  TTGACCCCAAGACCCCCAAGGAAGGCTTTGCCATCCCTTGAAGGCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCCAAGACCCCCAAGGAAGGCTTTGCCATCCCTTGAAGGCTCACC  500

seq1  CAAGGGGGAAGGCTTTGCCATTAACATGAGTTTGAGCTGAACCAGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGAAGGCTTTGCCATTAACATGAGTTTGAGCTGAACCAGTCCTT  550

seq1  GATATGACCTTGGCCATGCCATCAACACACATTCATTCAGGCCTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACCTTGGCCATGCCATCAACACACATTCATTCAGGCCTACACAT  600

seq1  TCAGGGCTTCCTCTGCTCTCCACAGAATCCCAGAAAAGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTTCCTCTGCTCTCCACAGAATCCCAGAAAAGAATTC  643

seq1: chr15_93877319_93877597
seq2: B6Ng01-228O07.g_74_352

seq1  TTTCTTTCTCTTGGGCTTTGAGAGTCACTGGAGGAACTGCACGTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCTTGGGCTTTGAGAGTCACTGGAGGAACTGCACGTTAAAAA  50

seq1  CCTGTGGGTCCAGATGCCTGTGTGGGTTTCTTCTAGCTCTTGTTCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGTCCAGATGCCTGTGTGGGTTTCTTCTAGCTCTTGTTCCATCT  100

seq1  CCAAATTTCAATTTCCAAAGTATTTAATCTCTAAAAGGTATTCAAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTCAATTTCCAAAGTATTTAATCTCTAAAAGGTATTCAAAAGGT  150

seq1  TCTGGTTTTAAAAACATTTTTTTTCCCTCTTCCTGAGGTGAGCCAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTAAAAACATTTTTTTTCCCTCTTCCTGAGGTGAGCCAAATAG  200

seq1  AATAGATACTTAGAGATAGATGGTAGGATTTAGGACTGTAATGTAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATACTTAGAGATAGATGGTAGGATTTAGGACTGTAATGTAAGGAT  250

seq1  CAAATAGAGAGGGGGAGGGGACGGGGGGA  279
      |||||||||||||||||||||||||||||
seq2  CAAATAGAGAGGGGGAGGGGACGGGGGGA  279