BAC Information

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BAC

Clone NameB6Ng01-230C20
Chromosome15 (Build37)
Map Location 65,281,904 - 65,422,446
singlet/doubletdoublet
Overlap genenone
Upstream geneAdcy8, LOC268812, LOC100040790, LOC665836
Downstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230C20.bB6Ng01-230C20.g
ACCGA043109GA043110
length4961,181
definitionB6Ng01-230C20.b B6Ng01-230C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,421,945 - 65,422,446)(65,281,904 - 65,283,079)
sequence
agctggagcttcagactcttcaattttttcctaataaatcaaattctacc
tgcagactagagctgtcatataggacaaaatccatttatcatggctaaca
caaaatagaaataaacagaacagcacaaagctaggcaagacaaagctaga
gacacaaaatgcagcatgctagttgaaaccatgaggtaccacaatgtcca
tgtcccttttgggtactttgtgatgcataccactcaaacacacaagctag
gagaaatatttagacctctgttttccgaaattactttcatggaaactcaa
gatgtatagagaaaagtggtactcattctcctagttatttagatggtggt
ttcttgatgaactcttctttttattgtcgagtcccacgttgcagctctgc
ccagagatactttttctcagcacaagtttgtgctgattcctgggctacag
aagagcaattatctcagaaaaagagagagagagagagagagagaga

gaattcttcagtttcccaaccacaaggatttctggagagccactgaattt
tagtctacattacaagtccagtgagtctgggttctgatatcagtaaagaa
atacagcaacagcagcaagaacaatgggagcaacagagtaaatgaatttt
ctagaagatatgaaggcaacaagaaaaaagcaaagcttcttttgtttgag
cagtcatctgaaggtgccactcacatttagggtagatcttcctataagcc
aataaacaaaaatctagtaggttagctgtttgttccagatccaatcaagt
atagaaccaacacttaccatcacagagattaaatacacggcatgggtatt
tgtcacatttggtagagatgcatacataatggcagactatgtactggcat
gttgtgtactaagtttttcagaaagcagtttattttataattcacccaat
aattttattatatataaaaaatttggacagtagttaagctagactacttc
tagtttggaaaaaaaaaaacaaaacatgaatacatcatcttgcactccat
aattcaaaatggtgcctccaaaggactctgggtttcctgccaggtgtttt
aaaattactcctattgaaatctctctgatgttttcccattggttaaacag
aaacagtgtggtgaatgagaaaagcaaggagcaaactctgtactatggtt
ccatgggtacatattgtcaactatttatcactattgctattgcaattgat
tccacagcattggtctgtttcttctgaattatgaggagaatttttatact
tttcttttatcatctttttttaaaatgtctgtacatcagtactggtagca
tatctttcatttctaacattgtatctttcttgatggccctgcctagaata
tcatcagttctatttttgtcttcaagtaacaaggttcaacgtttttatac
tattttattaaacctgactatatatacaatgttatttatttctttgagaa
tttcatacatgtattttgatcaatatttcatacccacttttccctcttat
tctctctagatccacttcctctttgcatcccttctttgtatctttctttt
tctggttgcgttaggaaagaacttgtctcaagcagaacaccctggtccta
atggattcttttacacacccctctttctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65421945_65422446
seq2: B6Ng01-230C20.b_45_546 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTGAGATAATTGCTCTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTGAGATAATTGCTCTTCTGT  50

seq1  AGCCCAGGAATCAGCACAAACTTGTGCTGAGAAAAAGTATCTCTGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAATCAGCACAAACTTGTGCTGAGAAAAAGTATCTCTGGGCAG  100

seq1  AGCTGCAACGTGGGACTCGACAATAAAAAGAAGAGTTCATCAAGAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAACGTGGGACTCGACAATAAAAAGAAGAGTTCATCAAGAAACCA  150

seq1  CCATCTAAATAACTAGGAGAATGAGTACCACTTTTCTCTATACATCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAAATAACTAGGAGAATGAGTACCACTTTTCTCTATACATCTTGA  200

seq1  GTTTCCATGAAAGTAATTTCGGAAAACAGAGGTCTAAATATTTCTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATGAAAGTAATTTCGGAAAACAGAGGTCTAAATATTTCTCCTAG  250

seq1  CTTGTGTGTTTGAGTGGTATGCATCACAAAGTACCCAAAAGGGACATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTTTGAGTGGTATGCATCACAAAGTACCCAAAAGGGACATGGA  300

seq1  CATTGTGGTACCTCATGGTTTCAACTAGCATGCTGCATTTTGTGTCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGTACCTCATGGTTTCAACTAGCATGCTGCATTTTGTGTCTCTA  350

seq1  GCTTTGTCTTGCCTAGCTTTGTGCTGTTCTGTTTATTTCTATTTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCTTGCCTAGCTTTGTGCTGTTCTGTTTATTTCTATTTTGTGTT  400

seq1  AGCCATGATAAATGGATTTTGTCCTATATGACAGCTCTAGTCTGCAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGATAAATGGATTTTGTCCTATATGACAGCTCTAGTCTGCAGGTA  450

seq1  GAATTTGATTTATTAGGAAAAAATTGAAGAGTCTGAAGCTCCAGCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGATTTATTAGGAAAAAATTGAAGAGTCTGAAGCTCCAGCTGAAT  500

seq1  TC  502
      ||
seq2  TC  502


seq1: chr15_65281904_65283079
seq2: B6Ng01-230C20.g_70_1250

seq1  GAATTCTTCAGTTTCCCAACCACAAGGATTTCTGGAGAGCCACTGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTTCCCAACCACAAGGATTTCTGGAGAGCCACTGAATTT  50

seq1  TAGTCTACATTACAAGTCCAGTGAGTCTGGGTTCTGATATCAGTAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACATTACAAGTCCAGTGAGTCTGGGTTCTGATATCAGTAAAGAA  100

seq1  ATACAGCAACAGCAGCAAGAACAATGGGAGCAACAGAGTAAATGAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAACAGCAGCAAGAACAATGGGAGCAACAGAGTAAATGAATTTT  150

seq1  CTAGAAGATATGAAGGCAACAAGAAAAAAGCAAAGCTTCTTTTGTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGATATGAAGGCAACAAGAAAAAAGCAAAGCTTCTTTTGTTTGAG  200

seq1  CAGTCATCTGAAGGTGCCACTCACATTTAGGGTAGATCTTCCTATAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTGAAGGTGCCACTCACATTTAGGGTAGATCTTCCTATAAGCC  250

seq1  AATAAACAAAAATCTAGTAGGTTAGCTGTTTGTTCCAGATCCAATCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAAAATCTAGTAGGTTAGCTGTTTGTTCCAGATCCAATCAAGT  300

seq1  ATAGAACCAACACTTACCATCACAGAGATTAAATACACGGCATGGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCAACACTTACCATCACAGAGATTAAATACACGGCATGGGTATT  350

seq1  TGTCACATTTGGTAGAGATGCATACATAATGGCAGACTATGTACTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTTGGTAGAGATGCATACATAATGGCAGACTATGTACTGGCAT  400

seq1  GTTGTGTACTAAGTTTTTCAGAAAGCAGTTTATTTTATAATTCACCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTACTAAGTTTTTCAGAAAGCAGTTTATTTTATAATTCACCCAAT  450

seq1  AATTTTATTATATATAAAAAATTTGGACAGTAGTTAAGCTAGACTACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTATATATAAAAAATTTGGACAGTAGTTAAGCTAGACTACTTC  500

seq1  TAGTTTGGAAAAAAAAAAACAAAACATGAATACATCATCTTGCACTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGAAAAAAAAAAACAAAACATGAATACATCATCTTGCACTCCAT  550

seq1  AATTCAAAATGGTGCCTCCAAAGGACTCTGGGTTTCCTGCCAGGTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATGGTGCCTCCAAAGGACTCTGGGTTTCCTGCCAGGTGTTTT  600

seq1  AAAATTACTCCTATTGAAATCTCTCTGATGTTTTCCCATTGGTTAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTCCTATTGAAATCTCTCTGATGTTTTCCCATTGGTTAAACAG  650

seq1  AAACAGTGTGGTGAATGAGAAAAGCAAGGAGCAAACTCTGTACTATGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTGGTGAATGAGAAAAGCAAGGAGCAAACTCTGTACTATGGTT  700

seq1  CCATGGGTACATATTGTCAACTATTTATCACTATTGCTATTGCAATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTACATATTGTCAACTATTTATCACTATTGCTATTGCAATTGAT  750

seq1  TCCACAGCATTGGTCTGTTTCTTCTGAATTATGAGGAGAATTTTTATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCATTGGTCTGTTTCTTCTGAATTATGAGGAGAATTTTTATACT  800

seq1  TTTCTTTTATCATCTTTTTTTAAAATGTCTGTACATCAGTACTGGTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTATCATCTTTTTTTAAAATGTCTGTACATCAGTACTGGTAGCA  850

seq1  TATCTTTCATTTCTAACATTGTATCTTTCTTGATGGCCCTGCCTAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCATTTCTAACATTGTATCTTTCTTGATGGCCCTGCCTAGAATA  900

seq1  TCATCAGTTCTATTTTTGTCTTCAAGTAACAAGGTTCAACGTTTTTATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTTCTATTTTTGTCTTCAAGTAACAAGGTTCAACGTTTTTATAC  950

seq1  TATTTTATTAAACCTGACTATAATAATACAATGTTATTTA-TTCTTTGAG  999
      ||||||||||||||||||||||   ||||||||||||||| |||||||||
seq2  TATTTTATTAAACCTGACTATA--TATACAATGTTATTTATTTCTTTGAG  998

seq1  AATTTCATACAATGTATTTTGATC-ATA-TTCATACCCAACTTTTCCCTC  1047
      |||||||||| ||||||||||||| ||| ||||||||| |||||||||||
seq2  AATTTCATAC-ATGTATTTTGATCAATATTTCATACCC-ACTTTTCCCTC  1046

seq1  TATCTCCTC-CTAGATCCACTTCCTCTTTGCATCCCCTTCTTTGTATC-T  1095
      | | | ||| ||||||||||||||||||||||| |||||||||||||| |
seq2  T-TATTCTCTCTAGATCCACTTCCTCTTTGCAT-CCCTTCTTTGTATCTT  1094

seq1  TCTTTTTCTTGTTTGCTTTTAGGAAAGA--CTGTCTCACAGCAG-ACACC  1142
      |||||||| || ||||  ||||||||||   ||||||| ||||| |||||
seq2  TCTTTTTC-TGGTTGC-GTTAGGAAAGAACTTGTCTCA-AGCAGAACACC  1141

seq1  CTTGTCCT-ATGGA---TCTTACACA-CCCTC-TTCTTTC  1176
      || ||||| |||||   | ||||||| ||||| |||||||
seq2  CTGGTCCTAATGGATTCTTTTACACACCCCTCTTTCTTTC  1181


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