BAC Information

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BAC

Clone NameB6Ng01-230I23
Chromosome15 (Build37)
Map Location 40,342,671 - 40,502,834
singlet/doubletdoublet
Overlap geneLOC664872, Zfpm2
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream genePpia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I23.bB6Ng01-230I23.g
ACCGA043393GA043394
length1,1521,142
definitionB6Ng01-230I23.b B6Ng01-230I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,501,697 - 40,502,834)(40,342,671 - 40,343,808)
sequence
gaattccctatcatgttccattgaaggtgtaacaactggaaatcccatta
tctagcaatcggcccatttgctactgaaaatgtgtcccccatagttggtt
ataaaaactaggctaatgctagttttttttttgctagaacttttttctgt
gtttagcaaaatgtcccaatagaatagcccgctatacagctggctgattc
caaatcagtcctgtaaacagccccgcctgcccatggtttccgagtcgcct
catggctcttgtttgatgtagacggtggcagagccattgctttcctggtc
agatgctccatggaggaagctatagtcctccccgtccagcagtccagcag
ctcctccttcagctgtgacgtggtcattttcttatgtcctttgtattgct
gagacttagcctttttcttctgttttgaagaagctgattggctttctctt
gatgactgtgatgctggaggctgtagttgatatccagttaactgacacca
ccctacaggatagaggtcaggggactcacagtctacccactggtcatact
cttcttcccaaccatcaaaatgtatcctcaagagacggtgaataattcga
gtaactgtggctacacatattaaccgtggctccatgagatctacagcttc
taatttcattcctacacggaatccgtggtttggaacatccttattaaata
gttttactggtgctgcaatggagccggttttccctgaggtagtcaaacca
ttttaaaaggaagttttgtgtaacctctgggtggagtcagttctatcatg
ttaatttcacagaaacccacagggaaaaatggaaggagaggttgcatgat
acagaccagtcagatccatctgctgcttctgagccatcaatcccaatcat
caggaatccatcagccagcaccttttaatggtggcacaacattatttgta
gaaagatttaatgggtctaatagcttccaatttccgaacgggaaagctac
tagcaaagacaatctcatgagttaagccacaaacagaattcaattaaaaa
gataccactcttgttcatctgtttttgccgtgtagtgtgctagcccgcaa
taaatatattccatatcaaactactgaatgccagggtgattattgtaaga
ca
gaattcaccccatgagagatctgcttctacctattgccctatcacttacg
gcccatttctatgggatcactatacttccttgcttttctggcatttacat
gacacactttggttaatgaaatttgaatggatgtatctataattatatat
gacagagaaaccttcggaatcatttgtatgtagacttagatttttcaaaa
cttactttaattatggttctttaatgacttccctcctagtccaccaccta
ccagttagagaaaaagaaaggttaataggaaacaggggttgttgacctgt
ttagaaatagttttctagaacgattccaatcttcactgtcaggagttcat
tccattagagagacaccaaacaggaatcagcagcagtggctccattcaaa
agcaaccacaacactccgctgattgctgattcacaggagtacttggaagc
ggcaggaagcagctgggataccagagttctttagtgcatttctctttatg
atgtcgtgacaagtgatgatcagaaaggtgaaccaatgcaagagtgttgt
cagcaaatcccagcctcagcaaagcccaatgaaaatagcaaaaagttgca
ctgtgaacaaatgggagacattgtccactgtctgttgggttcttcttata
cccttttcaagcatcacgtgctctttcaccaggcagcttccagaaaaact
ccacatctgttctcagcaaaacatctcataagacagtttccagagaagca
tcacatgtcacaactaagtctctcacaaaaccagaaattctcacttcacc
tgtattctttcatataaaaatgacatgtttgaccaaaaggcttcttttta
gcaatcgatttttcagtggaaatatatagagagggtaaatccataatgaa
tgcatagccacctgatgtacatttaatatgctaaatacagatgaatagta
acattcaggggtgtttgtaactgtaacattatctaataaaagctgaaaac
accaattgactaacatactgtacccttggcatccgtaatccaacattctt
aagggcattgagcatgtatcactagtttcatatttcctcaatagtcaact
gaagttcctaattcacaagtacgattttttgccttggaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40501697_40502834
seq2: B6Ng01-230I23.b_47_1198 (reverse)

seq1  TGTC-TACAATAATCACCCT-GCATTCAGTAGTTTGATAT-GAATAT-TT  46
      |||| ||||||||||||||| ||||||||||||||||||| |||||| ||
seq2  TGTCTTACAATAATCACCCTGGCATTCAGTAGTTTGATATGGAATATATT  50

seq1  TATTGC-GGCTAGCACAACACAC-GCAAAAACAGATGAAC-AGAGTGGTA  93
      |||||| ||||||||||  |||| |||||||||||||||| |||||||||
seq2  TATTGCGGGCTAGCACACTACACGGCAAAAACAGATGAACAAGAGTGGTA  100

seq1  TCTTTTTAATTGAA-TCTGTTTGT-GCTTAACTCATGAGATTGTCTTTGC  141
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TCTTTTTAATTGAATTCTGTTTGTGGCTTAACTCATGAGATTGTCTTTGC  150

seq1  TAGTAGC-TTCCCGTTC-GAAATTGGAAGCTA-TAGACCCATTAAATCTT  188
      ||||||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  TAGTAGCTTTCCCGTTCGGAAATTGGAAGCTATTAGACCCATTAAATCTT  200

seq1  TCTACAA--TATGTGTTGCCACCATTAGAAAGGTGCTGGCTGATGGATTC  236
      |||||||   ||||  ||||||||||| ||||||||||||||||||||||
seq2  TCTACAAATAATGTTGTGCCACCATTA-AAAGGTGCTGGCTGATGGATTC  249

seq1  CTGATGATTGGGATTGATGGCTCAGAAGCAGCAGATGGATCTGACTGGTT  286
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGATGATTGGGATTGATGGCTCAGAAGCAGCAGATGGATCTGACTGG-T  298

seq1  CTGTTATCATGCAACCTCTCCTTCCA-TTTTCCCTGTGGGTTTCTGTGAA  335
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTG-TATCATGCAACCTCTCCTTCCATTTTTCCCTGTGGGTTTCTGTGAA  347

seq1  ATTAACATGATAGAACTGACTCCACCCAGAGGTTACACAAAACTTCCTTT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATGATAGAACTGACTCCACCCAGAGGTTACACAAAACTTCCTTT  397

seq1  T-AAATGGTTTGACTACCTCAGGG-AAACCGGCTCCATTGCAGCACCAGT  433
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAAATGGTTTGACTACCTCAGGGAAAACCGGCTCCATTGCAGCACCAGT  447

seq1  AAAACTATTTAATAAGGATGTTCCAAACCACGGATTCCGTGTAGGAATGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTTAATAAGGATGTTCCAAACCACGGATTCCGTGTAGGAATGA  497

seq1  AATTAGAAGCTGTAGATCTCATGGAGCCACGGTTAATATGTGTAGCCACA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAGCTGTAGATCTCATGGAGCCACGGTTAATATGTGTAGCCACA  547

seq1  GTTACTCGAATTATTCACCGTCTCTTGAGGATACATTTTGATGGTTGGGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCGAATTATTCACCGTCTCTTGAGGATACATTTTGATGGTTGGGA  597

seq1  AGAAGAGTATGACCAGTGGGTAGACTGTGAGTCCCCTGACCTCTATCCTG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTATGACCAGTGGGTAGACTGTGAGTCCCCTGACCTCTATCCTG  647

seq1  TAGGGTGGTGTCAGTTAACTGGATATCAACTACAGCCTCCAGCATCACAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGTGTCAGTTAACTGGATATCAACTACAGCCTCCAGCATCACAG  697

seq1  TCATCAAGAGAAAGCCAATCAGCTTCTTCAAAACAGAAGAAAAAGGCTAA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGAGAAAGCCAATCAGCTTCTTCAAAACAGAAGAAAAAGGCTAA  747

seq1  GTCTCAGCAATACAAAGGACATAAGAAAATGACCACGTCACAGCTGAAGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCAATACAAAGGACATAAGAAAATGACCACGTCACAGCTGAAGG  797

seq1  AGGAGCTGCTGGACTGCTGGACGGGGAGGACTATAGCTTCCTCCATGGAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCTGGACTGCTGGACGGGGAGGACTATAGCTTCCTCCATGGAG  847

seq1  CATCTGACCAGGAAAGCAATGGCTCTGCCACCGTCTACATCAAACAAGAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACCAGGAAAGCAATGGCTCTGCCACCGTCTACATCAAACAAGAG  897

seq1  CCATGAGGCGACTCGGAAACCATGGGCAGGCGGGGCTGTTTACAGGACTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGCGACTCGGAAACCATGGGCAGGCGGGGCTGTTTACAGGACTG  947

seq1  ATTTGGAATCAGCCAGCTGTATAGCGGGCTATTCTATTGGGACATTTTGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATCAGCCAGCTGTATAGCGGGCTATTCTATTGGGACATTTTGC  997

seq1  TAAACACAGAAAAAAGTTCTAGCAAAAAAAAAACTAGCATTAGCCTAGTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGAAAAAAGTTCTAGCAAAAAAAAAACTAGCATTAGCCTAGTT  1047

seq1  TTTATAACCAACTATGGGGGACACATTTTCAGTAGCAAATGGGCCGATTG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCAACTATGGGGGACACATTTTCAGTAGCAAATGGGCCGATTG  1097

seq1  CTAGATAATGGGATTTCCAGTTGTTACACCTTCAATGGAACATGATAGGG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAATGGGATTTCCAGTTGTTACACCTTCAATGGAACATGATAGGG  1147

seq1  AATTC  1138
      |||||
seq2  AATTC  1152

seq1: chr15_40342671_40343808
seq2: B6Ng01-230I23.g_70_1211

seq1  GAATTCACCCCATGAGAGATCTGCTTCTACCTATTGCCCTATCACTTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCATGAGAGATCTGCTTCTACCTATTGCCCTATCACTTACG  50

seq1  GCCCATTTCTATGGGATCACTATACTTCCTTGCTTTTCTGGCATTTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTCTATGGGATCACTATACTTCCTTGCTTTTCTGGCATTTACAT  100

seq1  GACACACTTTGGTTAATGAAATTTGAATGGATGTATCTATAATTATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTTTGGTTAATGAAATTTGAATGGATGTATCTATAATTATATAT  150

seq1  GACAGAGAAACCTTCGGAATCATTTGTATGTAGACTTAGATTTTTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAACCTTCGGAATCATTTGTATGTAGACTTAGATTTTTCAAAA  200

seq1  CTTACTTTAATTATGGTTCTTTAATGACTTCCCTCCTAGTCCACCACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTAATTATGGTTCTTTAATGACTTCCCTCCTAGTCCACCACCTA  250

seq1  CCAGTTAGAGAAAAAGAAAGGTTAATAGGAAACAGGGGTTGTTGACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGAGAAAAAGAAAGGTTAATAGGAAACAGGGGTTGTTGACCTGT  300

seq1  TTAGAAATAGTTTTCTAGAACGATTCCAATCTTCACTGTCAGGAGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAGTTTTCTAGAACGATTCCAATCTTCACTGTCAGGAGTTCAT  350

seq1  TCCATTAGAGAGACACCAAACAGGAATCAGCAGCAGTGGCTCCATTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGAGAGACACCAAACAGGAATCAGCAGCAGTGGCTCCATTCAAA  400

seq1  AGCAACCACAACACTCCGCTGATTGCTGATTCACAGGAGTACTTGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCACAACACTCCGCTGATTGCTGATTCACAGGAGTACTTGGAAGC  450

seq1  GGCAGGAAGCAGCTGGGATACCAGAGTTCTTTAGTGCATTTCTCTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAGCAGCTGGGATACCAGAGTTCTTTAGTGCATTTCTCTTTATG  500

seq1  ATGTCGTGACAAGTGATGATCAGAAAGGTGAACCAATGCAAGAGTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTGACAAGTGATGATCAGAAAGGTGAACCAATGCAAGAGTGTTGT  550

seq1  CAGCAAATCCCAGCCTCAGCAAAGCCCAATGAAAATAGCAAAAAGTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATCCCAGCCTCAGCAAAGCCCAATGAAAATAGCAAAAAGTTGCA  600

seq1  CTGTGAACAAATGGGAGACATTGTCCACTGTCTGTTGGGTTCTTCTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACAAATGGGAGACATTGTCCACTGTCTGTTGGGTTCTTCTTATA  650

seq1  CCCTTTTCAAGCATCACGTGCTCTTTCACCAGGCAGCTTCCAGAAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCAAGCATCACGTGCTCTTTCACCAGGCAGCTTCCAGAAAAACT  700

seq1  CCACATCTGTTCTCAGCAAAACATCTCATAAGACAGTTTCCAGAGAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGTTCTCAGCAAAACATCTCATAAGACAGTTTCCAGAGAAGCA  750

seq1  TCACATGTCACAACTAAGTCTCTCACAAAACCAGAAATTCTCACTTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCACAACTAAGTCTCTCACAAAACCAGAAATTCTCACTTCACC  800

seq1  TGTATTCTTTCATATAAAAATGACATGTTTGACCAAAAGGCTTCTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTCATATAAAAATGACATGTTTGACCAAAAGGCTTCTTTTTA  850

seq1  GCAATCGATTTTTCAGTGGAAATATATAGAGAGGGTAAATCCATAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCGATTTTTCAGTGGAAATATATAGAGAGGGTAAATCCATAATGAA  900

seq1  TGCATAGCCACCTGATGTACATTTAATATGCTAAATACAGATGAATAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGCCACCTGATGTACATTTAATATGCTAAATACAGATGAATAGTA  950

seq1  ACATTCAGGGGTGTTTGTAACTGTAACATTATCTAATAAAAGCTG-ATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  ACATTCAGGGGTGTTTGTAACTGTAACATTATCTAATAAAAGCTGAAAAC  1000

seq1  A-CAATTGACT-ACATACTGTACCC-TGGCATCCGTAAATCCAACA-TCC  1045
      | ||||||||| ||||||||||||| |||||||||| ||||||||| || 
seq2  ACCAATTGACTAACATACTGTACCCTTGGCATCCGT-AATCCAACATTCT  1049

seq1  TAAGGGCATTGAGCATGTATCACTAAGTTTCATATT--CTCAATAGTTCA  1093
      |||||||||||||||||||||||| |||||||||||  |||||||| |||
seq2  TAAGGGCATTGAGCATGTATCACT-AGTTTCATATTTCCTCAATAG-TCA  1097

seq1  ACTG-AGTTCCTAATTCACAGTAAGGATTTTTTGTCTTGTAAATAA  1138
      |||| |||||||||||||||   | ||||||||| ||||  |||||
seq2  ACTGAAGTTCCTAATTCACAAGTACGATTTTTTGCCTTG-GAATAA  1142