BAC Information

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BAC

Clone NameB6Ng01-233B18
Chromosome15 (Build37)
Map Location 78,240,040 - 78,412,531
singlet/doubletdoublet
Overlap geneMpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2
Upstream geneBC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst
Downstream genePscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233B18.bB6Ng01-233B18.g
ACCGA045262GA045263
length8381,171
definitionB6Ng01-233B18.b B6Ng01-233B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,411,702 - 78,412,531)(78,240,040 - 78,241,194)
sequence
gaattcacatcctgcggtttttcattttatgtgtgggaaaaaaaaataca
aagtagcgtcaagagtgtgtttctgggaccaggggctatgcatccggtgc
gaatcatcccagcactactgcatccacagtgagacctccagctgaatccc
cactttcctttgcaggctaccctcatctccctttcccagtgagatgtctg
tctgtttgtctcccagggagctctttgggaaagagatgttttgttggaca
ccgcacgagcttgttttaatatgttgcgggagccacataacatgttagct
atgcaatgcacgtgggatttttttggcagtagaccaatcttctttcaggg
tccttcccctcctgccttctgaggctcctccctccccccctcccccccca
aaccaggaaggaacacaaggcaggagagagcagagacctccagcggttgg
acagagtgagattgtgtacacaggcaaagccagtcagttccgggttcaat
atgttcccgcccctcttgtgtgggcttccaggaagctggacggattggga
ctggggctgctgtaccccagcggggcccccaccccctttctggctgagtc
tggagtactagtgagaggtgagcaagggtgtttagacctattttagagaa
gtaagcaggaagtagggaccttggttgcagagaaaaggcagcagggcatt
tgggtaagggcctgtcccaggtcaggccagagtccccggagagaaagcaa
agatgcagtttggttgggagagttagccggacccagtaggacaatttctt
aatcatgagggccagtgttcatgggaatggctcagtgc
gaattctggttatgttcccattggactcctagaccggctcaatgaatgtg
tggatctgattggctgtgaagctgggctacatcttagagaagggctgaaa
ctttggtcttatttgctttacctatgggctaattgagcctggcccgggct
ctaccctactttgctgggcaaggaatagagtgagggacacgcaccaccct
ctcctggcgcccgcggtcgtaactgttctttgaagccatgcattattcaa
agcctggcagggggctccctgggtgttaaaggcagagcctggctcaccca
aggccctgtctgagttcttggactctgctctgccggtacgcaggctccac
ctacaccgattagcacatatccctagtcgcaatccctgaatgcaggcttg
tctctccattctggtatcttccctgttttgcagccccgcaatctgagcat
ctcctaggccatggccgccccgcaacttttccgagctctggtgtctgcgc
agtgggtggcggaggctctgaaggccccgcgctcctcacagccgctgaag
ttactggacgcgtcctggtacctacccaagctgggccgcgatgcacgacg
cgagtttgaggagcgccacatcccgggcgccgccttcttcgacatcgatc
gttgcagtgaccacacgtccccctacgaccacatgctgcctaacgccacg
cactttgccgactacgcgggcagcttgggcgtgagcgccgccacgcacgt
cgtgatctacgacgacagtgaccagggccctctattccgctccgcgggtc
tggtggatgttccgcgccttcggccaccactctgtgtcattgctggacgg
cggcttccgccactggctgaatcagacctgccaattcatctccggcaaaa
gccactcgggagcccgcgggagttcagcgcgcagctcgatccctctttca
tccaggacccacgagggacatccctggagactttggatgccccgcgcttt
cagggtggtggaacgcccgcgctagctggcccgtttcccagcacccagcc
agatcccgagattggttaacgcgctggggaaacggaactaattggggagt
gtgggaactggcccggtggttgatgtgccgcctccgatacttgcctagcc
gtgtgctgactttatatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78411702_78412531
seq2: B6Ng01-233B18.b_46_883 (reverse)

seq1  GCACTGAGCCA-TCCCATGAACACTGGCCCTCATGATTAAG-AACTGTCC  48
      ||||||||||| ||||||||||||||||||||||||||||| || |||||
seq2  GCACTGAGCCATTCCCATGAACACTGGCCCTCATGATTAAGAAATTGTCC  50

seq1  TACT-GGTCCGGCTAACTCTCCCAACC-AACTGCCTC-TTGC-TTCTCTC  94
      |||| |||||||||||||||||||||| |||||| || |||| |||||||
seq2  TACTGGGTCCGGCTAACTCTCCCAACCAAACTGCATCTTTGCTTTCTCTC  100

seq1  CGGGGACTCTGGCCTGACCCTGGGACAGGCCCTTACCC-AATGCCCTGCT  143
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CGGGGACTCTGGCCTGA-CCTGGGACAGGCCCTTACCCAAATGCCCTGCT  149

seq1  GCCTTTTCTCTGCAACC-ATGTCCCTACTTCCTGCTTACTTCTCTAAAAT  192
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  GCCTTTTCTCTGCAACCAAGGTCCCTACTTCCTGCTTACTTCTCTAAAAT  199

seq1  AGGTCT-AACACCCTTGCTCACCTCTCACTAGTACTCCAGACTCAGCCAG  241
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAAACACCCTTGCTCACCTCTCACTAGTACTCCAGACTCAGCCAG  249

seq1  AAAGGGGGTGGGGGCCCCGCTGGGGTACAGCAGCCCCAGTCCCAATCCGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGTGGGGGCCCCGCTGGGGTACAGCAGCCCCAGTCCCAATCCGT  299

seq1  CCAGCTTCCTGGAAGCCCACACAAGAGGGGCGGGAACATATTGAACCCGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGGAAGCCCACACAAGAGGGGCGGGAACATATTGAACCCGG  349

seq1  AACTGACTGGCTTTGCCTGTGTACACAATCTCACTCTGTCCAACCGCTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTGGCTTTGCCTGTGTACACAATCTCACTCTGTCCAACCGCTGG  399

seq1  AGGTCTCTGCTCTCTCCTGCCTTGTGTTCCTTCCTGGTTTGGGGGGGGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGCTCTCTCCTGCCTTGTGTTCCTTCCTGGTTTGGGGGGGGAG  449

seq1  GGGGGGAGGGAGGAGCCTCAGAAGGCAGGAGGGGAAGGACCCTGAAAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGGAGGAGCCTCAGAAGGCAGGAGGGGAAGGACCCTGAAAGAA  499

seq1  GATTGGTCTACTGCCAAAAAAATCCCACGTGCATTGCATAGCTAACATGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTCTACTGCCAAAAAAATCCCACGTGCATTGCATAGCTAACATGT  549

seq1  TATGTGGCTCCCGCAACATATTAAAACAAGCTCGTGCGGTGTCCAACAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCTCCCGCAACATATTAAAACAAGCTCGTGCGGTGTCCAACAAA  599

seq1  ACATCTCTTTCCCAAAGAGCTCCCTGGGAGACAAACAGACAGACATCTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTTCCCAAAGAGCTCCCTGGGAGACAAACAGACAGACATCTCA  649

seq1  CTGGGAAAGGGAGATGAGGGTAGCCTGCAAAGGAAAGTGGGGATTCAGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGGGAGATGAGGGTAGCCTGCAAAGGAAAGTGGGGATTCAGCT  699

seq1  GGAGGTCTCACTGTGGATGCAGTAGTGCTGGGATGATTCGCACCGGATGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTCACTGTGGATGCAGTAGTGCTGGGATGATTCGCACCGGATGC  749

seq1  ATAGCCCCTGGTCCCAGAAACACACTCTTGACGCTACTTTGTATTTTTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCTGGTCCCAGAAACACACTCTTGACGCTACTTTGTATTTTTTT  799

seq1  TTCCCACACATAAAATGAAAAACCGCAGGATGTGAATTC  830
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACACATAAAATGAAAAACCGCAGGATGTGAATTC  838

seq1: chr15_78240040_78241194
seq2: B6Ng01-233B18.g_66_1236

seq1  GAATTCTGGTTATGTTCCCATTGGACTCCTAGACCGGCTCAATGAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTATGTTCCCATTGGACTCCTAGACCGGCTCAATGAATGTG  50

seq1  TGGATCTGATTGGCTGTGAAGCTGGGCTACATCTTAGAGAAGGGCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGATTGGCTGTGAAGCTGGGCTACATCTTAGAGAAGGGCTGAAA  100

seq1  CTTTGGTCTTATTTGCTTTACCTATGGGCTAATTGAGCCTGGCCCGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTATTTGCTTTACCTATGGGCTAATTGAGCCTGGCCCGGGCT  150

seq1  CTACCCTACTTTGCTGGGCAAGGAATAGAGTGAGGGACACGCACCACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTACTTTGCTGGGCAAGGAATAGAGTGAGGGACACGCACCACCCT  200

seq1  CTCCTGGCGCCCGCGGTCGTAACTGTTCTTTGAAGCCATGCATTATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCGCCCGCGGTCGTAACTGTTCTTTGAAGCCATGCATTATTCAA  250

seq1  AGCCTGGCAGGGGGCTCCCTGGGTGTTAAAGGCAGAGCCTGGCTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAGGGGGCTCCCTGGGTGTTAAAGGCAGAGCCTGGCTCACCCA  300

seq1  AGGCCCTGTCTGAGTTCTTGGACTCTGCTCTGCCGGTACGCAGGCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTCTGAGTTCTTGGACTCTGCTCTGCCGGTACGCAGGCTCCAC  350

seq1  CTACACCGATTAGCACATATCCCTAGTCGCAATCCCTGAATGCAGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCGATTAGCACATATCCCTAGTCGCAATCCCTGAATGCAGGCTTG  400

seq1  TCTCTCCATTCTGGTATCTTCCCTGTTTTGCAGCCCCGCAATCTGAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATTCTGGTATCTTCCCTGTTTTGCAGCCCCGCAATCTGAGCAT  450

seq1  CTCCTAGGCCATGGCCGCCCCGCAACTTTTCCGAGCTCTGGTGTCTGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGCCATGGCCGCCCCGCAACTTTTCCGAGCTCTGGTGTCTGCGC  500

seq1  AGTGGGTGGCGGAGGCTCTGAAGGCCCCGCGCTCCTCACAGCCGCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGCGGAGGCTCTGAAGGCCCCGCGCTCCTCACAGCCGCTGAAG  550

seq1  TTACTGGACGCGTCCTGGTACCTACCCAAGCTGGGCCGCGATGCACGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGACGCGTCCTGGTACCTACCCAAGCTGGGCCGCGATGCACGACG  600

seq1  CGAGTTTGAGGAGCGCCACATCCCGGGCGCCGCCTTCTTCGACATCGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTGAGGAGCGCCACATCCCGGGCGCCGCCTTCTTCGACATCGATC  650

seq1  GTTGCAGTGACCACACGTCCCCCTACGACCACATGCTGCCTAACGCCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTGACCACACGTCCCCCTACGACCACATGCTGCCTAACGCCACG  700

seq1  CACTTTGCCGACTACGCGGGCAGCTTGGGCGTGAGCGCCGCCACGCACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCCGACTACGCGGGCAGCTTGGGCGTGAGCGCCGCCACGCACGT  750

seq1  CGTGATCTACGACGACAGTGACCAGGG-CCTCTATTCCGCTCCGCGGGTC  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGTGATCTACGACGACAGTGACCAGGGCCCTCTATTCCGCTCCGCGGGTC  800

seq1  TGGTGGATGTTCCGCGCCTTCGGCCACCACTCTGTGTCATTGCTGGACGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATGTTCCGCGCCTTCGGCCACCACTCTGTGTCATTGCTGGACGG  850

seq1  CGGCTTCCGCCACTGGCTGAATCAGAACCTGCCAA-TCAGCTCCGGCAAA  898
      ||||||||||||||||||||||||| ||||||||| ||| ||||||||||
seq2  CGGCTTCCGCCACTGGCTGAATCAG-ACCTGCCAATTCATCTCCGGCAAA  899

seq1  AGCCACTC-GGAGCCCGC-GGAGTTCAGCGCGCAGCTCGATCCCTCTTTC  946
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  AGCCACTCGGGAGCCCGCGGGAGTTCAGCGCGCAGCTCGATCCCTCTTTC  949

seq1  AT-CAAGACCCACGA-GGACAT-CCTGGAGAACTTGGATGCCCGGCGCTT  993
      || || ||||||||| |||||| ||||||||  |||||||||| ||||||
seq2  ATCCAGGACCCACGAGGGACATCCCTGGAGACTTTGGATGCCCCGCGCTT  999

seq1  CCA-GGTGGTGG-ACGCCCGCGC-AGCTGG-CCGTTTCCAAGGCACCCAG  1039
       || |||||||| |||||||||| |||||| |||||||| | ||||||||
seq2  TCAGGGTGGTGGAACGCCCGCGCTAGCTGGCCCGTTTCCCA-GCACCCAG  1048

seq1  CCAGAACCCCGAGAT--GGTAACGCGCTGGGGAAACGG-ACTAA-TGGGG  1085
      |||| | ||||||||  | ||||||||||||||||||| ||||| |||||
seq2  CCAG-ATCCCGAGATTGGTTAACGCGCTGGGGAAACGGAACTAATTGGGG  1097

seq1  A-TGTGGGGACTGG-CCGGTGTGTGATGTG-CGCTCCAGACAC-TGCCTA  1131
      | |||||| ||||| ||||||  ||||||| |||  | || || ||||||
seq2  AGTGTGGGAACTGGCCCGGTGGTTGATGTGCCGCCTCCGATACTTGCCTA  1147

seq1  GCCGTGTGCTGGCCTTATATGCAT  1155
      ||||||||||| | ||||||||||
seq2  GCCGTGTGCTGACTTTATATGCAT  1171