BAC Information

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BAC

Clone NameB6Ng01-233K17
Chromosome15 (Build37)
Map Location 55,743,622 - 55,881,798
singlet/doubletdoublet
Overlap geneLOC665348, LOC100039908
Upstream geneEnpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp, Sntb1
Downstream geneHba-ps3, Has2, EG594843, LOC435442, LOC100040067, LOC100039984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233K17.bB6Ng01-233K17.g
ACCGA045658GA045659
length1,124894
definitionB6Ng01-233K17.b B6Ng01-233K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,743,622 - 55,744,752)(55,880,914 - 55,881,798)
sequence
gaattctctttttacctcttcttctctaacaacctgtaatgaaaacaagc
tttgtatcaatagggctattttaatctgcatttgattttaatgcagtcca
tctttccttaatggatatattttgtttgtttgtttgtttgtttgtgtgtt
tgtttgttttattctttgtgaactgtagaatgatgaatcagatttcattt
taaagaacatggaatacagaggtaagactctagatgtatatagaccaaca
tgtactagaaatttcaacagcagggtccacgtggaggggaggtgaagagg
aacaagaaacccatgtcccgactccacctgtctttaaagtaacatcagat
aaaatttgaagttattattttaggatgttgctaaactatctctcatgctc
caagtttgctactacattaatatagtgacctttgcactggggacctgtga
gatgggacctgtgtctgaatcctttattatcttcactctctttatggaga
catttctgtacacccctctcagtctaagagaaacagcaaacttccttcct
cactctgcccccaacctgatagcctatttctgtttatagctcaccaagcc
actccttcctgcatagtttcctctcagacaacatcctactgttaactctg
tgttgagctcagagttcttcactgtgaccatgtgtaaagtgcctactctc
ccagtgctcagctctaagaccatcactgtgactatgtgtgaagtctctac
cacgccaatgctgagccccaagtccatcactgtgactatacatgaagtct
cctttggatttctcttcatctctatagtctaccacatgacccataatctt
gctttctctagttaattaactccaactaaccacagtctggaaatgttaat
ggaaattcccagaatgttcagataaaccaaatgttaactatcactataga
tagattggagcccattgagaacttatctagttcttgggaagccatttact
tctgagatcagggaacatgcaagcaaaccaatactggtgataaaacttgg
agtgactggtgaagctgaaggacttcctatgatttttttttactatgatg
ggaacacaaacatttaatggaact
gaattctgtatgacaaatggctcaatagaaaaatatgaattttcctccac
tgtatttcttggagtttcccacagagcatctttcatgcactaaacttcca
ggggtgggttttgggggtattgggaaattgagatctaatatttgaaagat
gttttccagtccttattgcactcagatgtacacaaaccccagatcacagg
attcctttttactaaagtcctagcttggccccagtaaggaataagataaa
gaagccgtgggtgaatgtaagcttggaaaccaaaactagagtttggtggg
tgtatgagttcaataaagatgaagtaatgtgtgaacgccttaattatgat
tggataaaagtagcttaaaaaccccagtctagccatcccaattcactcac
tcccagagtcccatggagatgccatcatgctgagatcaacctacccagac
gtccactatcttgcaaatcttacctgatgtgccaccatctatgacattgg
gccagacaggaggttagtgaagtgtgtgtgtgaaagaatgtgatcccatt
ttgctacttgttactacttatgaataaatagctataacctaacctcccag
tcccaggcttccttctcgcctctgtcctcaatcccgactcatgacagtcc
tgcattttttgcctagtaaccaggataatcttacttgctgctctccctca
aaaaaaaaaaaaaaatgaggaaggggaatctcaattataagattaaagga
caaaccaaatgcattgcactgccaaccctcggatcaatgtccactctcag
atcttttagcttcttcttgctaaacaaaggctataaagttggtagctaac
ttcaaatcccagaagactggctgagattctataaatggttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55743622_55744752
seq2: B6Ng01-233K17.b_47_1170

seq1  GAATTCTCTTTTTACCTCTTCTTCTCTAACAACCTGTAATGAAAACAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTACCTCTTCTTCTCTAACAACCTGTAATGAAAACAAGC  50

seq1  TTTGTATCAATAGGGCTATTTTAATCTGCATTTGATTTTAATGCAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCAATAGGGCTATTTTAATCTGCATTTGATTTTAATGCAGTCCA  100

seq1  TCTTTCCTTAATGGATATATTTTGTTTGTTTGTTTGTTTGTTTGTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTAATGGATATATTTTGTTTGTTTGTTTGTTTGTTTGTGTGTT  150

seq1  TGTTTGTTTTATTCTTTGTGAACTGTAGAATGATGAATCAGATTTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTATTCTTTGTGAACTGTAGAATGATGAATCAGATTTCATTT  200

seq1  TAAAGAACATGGAATACAGAGGTAAGACTCTAGATGTATATAGACCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACATGGAATACAGAGGTAAGACTCTAGATGTATATAGACCAACA  250

seq1  TGTACTAGAAATTTCAACAGCAGGGTCCACGTGGAGGGGAGGTGAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAGAAATTTCAACAGCAGGGTCCACGTGGAGGGGAGGTGAAGAGG  300

seq1  AACAAGAAACCCATGTCCCGACTCCACCTGTCTTTAAAGTAACATCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAACCCATGTCCCGACTCCACCTGTCTTTAAAGTAACATCAGAT  350

seq1  AAAATTTGAAGTTATTATTTTAGGATGTTGCTAAACTATCTCTCATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAAGTTATTATTTTAGGATGTTGCTAAACTATCTCTCATGCTC  400

seq1  CAAGTTTGCTACTACATTAATATAGTGACCTTTGCACTGGGGACCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGCTACTACATTAATATAGTGACCTTTGCACTGGGGACCTGTGA  450

seq1  GATGGGACCTGTGTCTGAATCCTTTATTATCTTCACTCTCTTTATGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACCTGTGTCTGAATCCTTTATTATCTTCACTCTCTTTATGGAGA  500

seq1  CATTTCTGTACACCCCTCTCAGTCTAAGAGAAACAGCAAACTTCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTACACCCCTCTCAGTCTAAGAGAAACAGCAAACTTCCTTCCT  550

seq1  CACTCTGCCCCCAACCTGATAGCCTATTTCTGTTTATAGCTCACCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCCCCCAACCTGATAGCCTATTTCTGTTTATAGCTCACCAAGCC  600

seq1  ACTCCTTCCTGCATAGTTTCCTCTCAGACAACATCCTACTGTTAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTGCATAGTTTCCTCTCAGACAACATCCTACTGTTAACTCTG  650

seq1  TGTTGAGCTCAGAGTTCTTCACTGTGACCATGTGTAAAGTGCCTACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCTCAGAGTTCTTCACTGTGACCATGTGTAAAGTGCCTACTCTC  700

seq1  CCAGTGCTCAGCTCTAAGACCATCACTGTGACTATGTGTGAAGTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTCAGCTCTAAGACCATCACTGTGACTATGTGTGAAGTCTCTAC  750

seq1  CACGCCAATGCTGAGCCCCAAGTCCATCACTGTGACTATACATGAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCAATGCTGAGCCCCAAGTCCATCACTGTGACTATACATGAAGTCT  800

seq1  CCTTTGGATTTCTCTTCATCTCTATAGTCTACCACATGACCCATAATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGATTTCTCTTCATCTCTATAGTCTACCACATGACCCATAATCTT  850

seq1  GCTTTCTCTAGTTAATTAACTCCAACTAACCACAGTCTGGAAATGTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTAGTTAATTAACTCCAACTAACCACAGTCTGGAAATGTTAAT  900

seq1  GGAAATTCCCAGAATGTTCAGATAAACCAAATGTTAACTATTCACTATAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAAATTCCCAGAATGTTCAGATAAACCAAATGTTAACTA-TCACTATAG  949

seq1  ATAGATTGGGAGCCCATTGAAGAACTTATCTAAGTTC-TGGGAAGCCATT  999
      ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||
seq2  ATAGATT-GGAGCCCATTG-AGAACTTATCT-AGTTCTTGGGAAGCCATT  996

seq1  TACTTCTGGAGATCAAGGGAACATGCAAGGCAAACAAATACTGGTGATAA  1049
      ||||||| |||||| ||||||||||||| |||||| ||||||||||||||
seq2  TACTTCT-GAGATC-AGGGAACATGCAA-GCAAACCAATACTGGTGATAA  1043

seq1  AAACTTGAGTGACTGTGAAAAGCTGAAGGACTTTCCTATGATTTTTTTTA  1099
      ||  | ||||||||| |  |||||||||||| ||||||||||||||||| 
seq2  AACTTGGAGTGACTG-GTGAAGCTGAAGGAC-TTCCTATGATTTTTTTTT  1091

seq1  CATATAATAGGAACACAAACATATAAT-GAACT  1131
        ||| || ||||||||||||| |||| |||||
seq2  ACTATGATGGGAACACAAACATTTAATGGAACT  1124

seq1: chr15_55880914_55881798
seq2: B6Ng01-233K17.g_64_957 (reverse)

seq1  AAGGAACTATTTATAGAATCTCAG-CAGTC-TCTGGGATTTGAAGTTAGC  48
      | ||||| |||||||||||||||| ||||| |||||||||||||||||||
seq2  AGGGAACCATTTATAGAATCTCAGCCAGTCTTCTGGGATTTGAAGTTAGC  50

seq1  TACCAACTTTATAGCCTTTG-TTAGCAAGAGGAAGCTAAAAGATCTGAGA  97
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TACCAACTTTATAGCCTTTGTTTAGCAAGAAGAAGCTAAAAGATCTGAGA  100

seq1  GTGGACATTGATCCGAGGGTTGGCAGTGCAATGCATTTGG-TTGTCC-TT  145
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GTGGACATTGATCCGAGGGTTGGCAGTGCAATGCATTTGGTTTGTCCTTT  150

seq1  AATCTTAT-ATTGAGATTCCCCTTCCTCA-TTTTTTTTTTTTTTTGAGGG  193
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AATCTTATAATTGAGATTCCCCTTCCTCATTTTTTTTTTTTTTTTGAGGG  200

seq1  AGAGCAGCAAGT-AGATTATCCTGGTTACTAGGC-AAAAATGCAGGACTG  241
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AGAGCAGCAAGTAAGATTATCCTGGTTACTAGGCAAAAAATGCAGGACTG  250

seq1  TCATGAGTCGGGATTGAGGACAGAGGCGAGAAGGAAGCCTGGGACTGGGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTCGGGATTGAGGACAGAGGCGAGAAGGAAGCCTGGGACTGGGA  300

seq1  GGTTAGGTTATAGCTATTTATTCATAAGTAGTAACAAGTAGCAAAATGGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGTTATAGCTATTTATTCATAAGTAGTAACAAGTAGCAAAATGGG  350

seq1  ATCACATTCTTTCACACACACACTTCACTAACCTCCTGTCTGGCCCAATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTCTTTCACACACACACTTCACTAACCTCCTGTCTGGCCCAATG  400

seq1  TCATAGATGGTGGCACATCAGGTAAGATTTGCAAGATAGTGGACGTCTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATGGTGGCACATCAGGTAAGATTTGCAAGATAGTGGACGTCTGG  450

seq1  GTAGGTTGATCTCAGCATGATGGCATCTCCATGGGACTCTGGGAGTGAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTGATCTCAGCATGATGGCATCTCCATGGGACTCTGGGAGTGAGT  500

seq1  GAATTGGGATGGCTAGACTGGGGTTTTTAAGCTACTTTTATCCAATCATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGATGGCTAGACTGGGGTTTTTAAGCTACTTTTATCCAATCATA  550

seq1  ATTAAGGCGTTCACACATTACTTCATCTTTATTGAACTCATACACCCACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCGTTCACACATTACTTCATCTTTATTGAACTCATACACCCACC  600

seq1  AAACTCTAGTTTTGGTTTCCAAGCTTACATTCACCCACGGCTTCTTTATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAGTTTTGGTTTCCAAGCTTACATTCACCCACGGCTTCTTTATC  650

seq1  TTATTCCTTACTGGGGCCAAGCTAGGACTTTAGTAAAAAGGAATCCTGTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTACTGGGGCCAAGCTAGGACTTTAGTAAAAAGGAATCCTGTG  700

seq1  ATCTGGGGTTTGTGTACATCTGAGTGCAATAAGGACTGGAAAACATCTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGTTTGTGTACATCTGAGTGCAATAAGGACTGGAAAACATCTTT  750

seq1  CAAATATTAGATCTCAATTTCCCAATACCCCCAAAACCCACCCCTGGAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTAGATCTCAATTTCCCAATACCCCCAAAACCCACCCCTGGAAG  800

seq1  TTTAGTGCATGAAAGATGCTCTGTGGGAAACTCCAAGAAATACAGTGGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCATGAAAGATGCTCTGTGGGAAACTCCAAGAAATACAGTGGAG  850

seq1  GAAAATTCATATTTTTCTATTGAGCCATTTGTCATACAGAATTC  885
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCATATTTTTCTATTGAGCCATTTGTCATACAGAATTC  894