BAC Information

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BAC

Clone NameB6Ng01-234I15
Chromosome15 (Build37)
Map Location 39,327,173 - 39,431,412
singlet/doubletdoublet
Overlap geneRims2
Upstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234I15.bB6Ng01-234I15.g
ACCGA046276GA046277
length5491,010
definitionB6Ng01-234I15.b B6Ng01-234I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,430,857 - 39,431,412)(39,327,173 - 39,328,026)
sequence
actcatgatcactctgaaagctaagaaagttgccctttaaagatcatagg
taaataggaatggcttaggcataaaaagcctataataattataaatatca
cagtcagtctcgtaagatagagagtaaccattcaggactggatggtgagc
tcttcacagcactgcataggggaggagaccagacagtctgctctcaacaa
tactacataaggttcctgcttttcacagccagagtacttgttttaagaat
tttttcctaatgcttttttatgagccaaatattgtagaaatcctatttta
tttcagagtagtaagtaacttctaaagggtctttcaaacatgatctttgg
ttttctgtcaataattaaatatgaaaaagaaatgatgtattaataatttg
attatgaatcatgagttaaaagttgtgcaatcaataatcagggtggggga
ggcgaggggagtggggagtagtgagacaattcacagtccctgctgccaag
cttggtggactgagttggatttgaagtccaacatgaatgggaagagaat
gaattctcactaaaaacacaggaaaagcagaaaattatcatgtattcatt
tagaataagttagaaagtgattagggaaaatacattcataactgagaaat
gtgaaatttgaaaaaatatagaaattattagtgttactgagcttatcatt
catcattttgaaattagcaaaataaacctttattactttatttctggaat
aaaaacagataggatgcaaactggcaggttcttaggtacatatacataag
ataaaaagattcatagaggcatggtaatgtatataggtaatttatataaa
tcacagactgactgagaacatgagtagcaaaatgtgattgtaaacattag
agaaaaactttgaaaaattaaacaaaatgaacaacttactttaaaacagt
atttattgaggacacagagacaaaattctaattaaaaaaatcagaactga
aaagggagacataacaacagatcctgaagaaatccaaaacaccatcagat
ccttctacaaaaggctatactcaacaaaactggaaaacctggacgaaatg
gacaaatttctggacagataccaggtaccaaagttgaatcaggatcaagt
tgaccttctaaacagtcccatatcccctaaagaaatagaagcagttataa
atagtctcccagccaaaaaaagcccaggaccagacgggtttagtgcagag
ttctatcagaccttcaaagaagatataattccagttctgcacaaactttt
tcacaagatagaagtagaaagtactctacccaactcattttatgaagcca
ctattactctgatacctaaaccacagaaagatccaacaaagatagagaac
ttcagaccaatttctcttatgaatatcgatgcaaaaatcctcaataaatt
tctcgctaaccgaattcaagaacacattagagcaatcatccatcctgacc
aagtaggttttattccagggatgcaggatgatttaatatacgaaaatcca
tcatgtaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39430857_39431412
seq2: B6Ng01-234I15.b_46_600 (reverse)

seq1  ATTCTCTTCCCA-CCATGTGTGACTTGTGAATCAAACTCAGGCCACCAGG  49
      ||||||||||||  |||||  |||||   |||| ||||||| |||||| |
seq2  ATTCTCTTCCCATTCATGTTGGACTT-CAAATCCAACTCAGTCCACCAAG  49

seq1  CTTGGCAGCAGGGACTGGTGAACTGTCTCACTACTCCCCACTCCCCTCGC  99
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CTTGGCAGCAGGGACT-GTGAATTGTCTCACTACTCCCCACTCCCCTCGC  98

seq1  CTCCCCCACCCTGATTATTGATTGCACAACTTTTAACTCATGATTCATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCTGATTATTGATTGCACAACTTTTAACTCATGATTCATAA  148

seq1  TCAAATTATTAATACATCATTTCTTTTTCATATTTAATTATTGACAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATTAATACATCATTTCTTTTTCATATTTAATTATTGACAGAAA  198

seq1  ACCAAAGATCATGTTTGAAAGACCCTTTAGAAGTTACTTACTACTCTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGATCATGTTTGAAAGACCCTTTAGAAGTTACTTACTACTCTGAA  248

seq1  ATAAAATAGGATTTCTACAATATTTGGCTCATAAAAAAGCATTAGGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGGATTTCTACAATATTTGGCTCATAAAAAAGCATTAGGAAAA  298

seq1  AATTCTTAAAACAAGTACTCTGGCTGTGAAAAGCAGGAACCTTATGTAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAAACAAGTACTCTGGCTGTGAAAAGCAGGAACCTTATGTAGT  348

seq1  ATTGTTGAGAGCAGACTGTCTGGTCTCCTCCCCTATGCAGTGCTGTGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAGAGCAGACTGTCTGGTCTCCTCCCCTATGCAGTGCTGTGAAG  398

seq1  AGCTCACCATCCAGTCCTGAATGGTTACTCTCTATCTTACGAGACTGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATCCAGTCCTGAATGGTTACTCTCTATCTTACGAGACTGACT  448

seq1  GTGATATTTATAATTATTATAGGCTTTTTATGCCTAAGCCATTCCTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTATAATTATTATAGGCTTTTTATGCCTAAGCCATTCCTATTT  498

seq1  ACCTATGATCTTTAAAGGGCAACTTTCTTAGCTTTCAGAGTGATCATGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGATCTTTAAAGGGCAACTTTCTTAGCTTTCAGAGTGATCATGAG  548

seq1  TGAATTC  556
      |||||||
seq2  TGAATTC  555

seq1: chr15_39327173_39328026
seq2: B6Ng01-234I15.g_62_915

seq1  GAATTCTCACTAAAAACACAGGAAAAGCAGAAAATTATCATGTATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTAAAAACACAGGAAAAGCAGAAAATTATCATGTATTCATT  50

seq1  TAGAATAAGTTAGAAAGTGATTAGGGAAAATACATTCATAACTGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAGTTAGAAAGTGATTAGGGAAAATACATTCATAACTGAGAAAT  100

seq1  GTGAAATTTGAAAAAATATAGAAATTATTAGTGTTACTGAGCTTATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTGAAAAAATATAGAAATTATTAGTGTTACTGAGCTTATCATT  150

seq1  CATCATTTTGAAATTAGCAAAATAAACCTTTATTACTTTATTTCTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTGAAATTAGCAAAATAAACCTTTATTACTTTATTTCTGGAAT  200

seq1  AAAAACAGATAGGATGCAAACTGGCAGGTTCTTAGGTACATATACATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGATAGGATGCAAACTGGCAGGTTCTTAGGTACATATACATAAG  250

seq1  ATAAAAAGATTCATAGAGGCATGGTAATGTATATAGGTAATTTATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATTCATAGAGGCATGGTAATGTATATAGGTAATTTATATAAA  300

seq1  TCACAGACTGACTGAGAACATGAGTAGCAAAATGTGATTGTAAACATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTGACTGAGAACATGAGTAGCAAAATGTGATTGTAAACATTAG  350

seq1  AGAAAAACTTTGAAAAATTAAACAAAATGAACAACTTACTTTAAAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTTTGAAAAATTAAACAAAATGAACAACTTACTTTAAAACAGT  400

seq1  ATTTATTGAGGACACAGAGACAAAATTCTAATTAAAAAAATCAGAACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGAGGACACAGAGACAAAATTCTAATTAAAAAAATCAGAACTGA  450

seq1  AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT  500

seq1  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATG  550

seq1  GACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGT  600

seq1  TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAA  650

seq1  ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAG  700

seq1  TTCTATCAGACCTTCAAAGAAGATATAATTCCAGTTCTGCACAAACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGACCTTCAAAGAAGATATAATTCCAGTTCTGCACAAACTTTT  750

seq1  TCACAAGATAGAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGATAGAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCA  800

seq1  CTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAAC  850

seq1  TTCA  854
      ||||
seq2  TTCA  854