BAC Information

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BAC

Clone NameB6Ng01-235C22
Chromosome15 (Build37)
Map Location 21,286,095 - 21,287,261
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C22.bB6Ng01-235C22.g
ACCGA046725GA046726
length9961,168
definitionB6Ng01-235C22.b B6Ng01-235C22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccctgtactggggaatataaagtttgcaataccaacgggactct
cttcccagtgacttcattcctccttaaaatagggaacaaaatactcatga
aaggagttacagagacaaagtttagagttaagacgaaaggatggactatc
cagagactactccacctggagatccatcccataatcagccaccaaatcca
gacactattgcatatgccagcaaggttttgctgaagggaccatggtatag
ctgtcttgtatgaggctatgccagtgcctggcaaatacagaagtgaatgc
tcacagtcatctataaaacggaacacagggcccccagtggagaagctaga
gaaagcacccaaggagctgaaggggtctgcaaacctacaggtggaacaac
aatatgaactaagtactaccccggagctcatgtctctagctgcatatgta
gaagaaggtatattcttttcatttaggatgaaatgttctatagatatctg
ttaaatccatttgattcataacctctattagtttcactgtgtctctgttt
agtatctgtttccatgacctgttcatcagtgagagtggagtgttgaagtc
tcccactattattgtgtgaggttcagtgtatgttttgagctttagtaatg
tttcttttccaaatgtgagtgaccttggatttggggcctagatgttcagg
attgagagttcaccttgctggattttttcctttgatgaataaaatgtgtc
cttcctcatctcatttgataacttttggttgaaagtctattttataggat
atgagaatggctactccagcttgtttcttgggactatttgcttggaattt
tttttttcagccttttactctaaggtagtatttgtctttgtaactgaggt
gtgttttctgtatggagcaaaatgctgggttctgttacttatcctgtcta
taatcctctttctttttattatataattgagaccattgatgtgagg

gaattcacagatatccgtctgcctctgccttccatgtcatgagattaaag
acatgagccactaccacttggcactaaaaaacacaatttgaggacctcaa
atgatatggagaaaagattatgggtttagtgattggaaaatgtctaccca
gtgttttctttgctttttttttttaaaccaagtatagctacacagagaaa
taaatatatgattacatttgcagaacaatataatttgctttgccattttt
actttccatgtttctgtatttatataatcaatctataaagaattagactg
ctataatgattcacttctcaaatctcagcacttgggcagttggctctgat
gggtctctgtcactctaaggctagcctggtctacaaagcaagttctagac
cagccaggacaacacagtgaaaccctatcctttaaaaatagaaagtatgt
ttttaaaagttgtcattgagtaaaaacacagggtttaatcttatgatgtg
taattttctgttaaaactgtgatatgttatttaattagttagatttttca
atattcaagaagctattatattaattttcatatatattgataaactagat
attgggtaatttgatgctgtttaaaacctatacctcttttggtcaccagg
ataccactgtccatcagcagataatctgagaagcctatgcagtgactttg
atatctttctacattttgctgtgctgaggctggacagacactcagggttt
cacattacttggtggttttcagagaaccagggttcagtttctagaatcca
tttaaggactcataactctcagtcactaagaggagagtgatgtcctcttc
tcacatctctggaaatcggaagcatatgtggtacacattctttatgtacg
caaaaacattcattagacccaaagtaacagcaacagctttaaaagacacc
caccatgtagttcaccactaaatgagttgtgcattagccatgtatttcta
ctaactgcctagcattaaaaaaaaaaatgtttgctctgatcatttagtct
ttgtggagactagaatattttagtcagaagtaaaggaatgtacactgaag
gaggggtagccagccctctgcattaatctggattcagatggggcctgaac
aggcaacatcagcttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21286095_21287261
seq2: B6Ng01-235C22.g_67_1234

seq1  GAATTCACAGATATCCGTCTGCCTCTGCCTTCCATGTCATGAGATTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATATCCGTCTGCCTCTGCCTTCCATGTCATGAGATTAAAG  50

seq1  ACATGAGCCACTACCACTTGGCACTAAAAAACACAATTTGAGGACCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCCACTACCACTTGGCACTAAAAAACACAATTTGAGGACCTCAA  100

seq1  ATGATATGGAGAAAAGATTATGGGTTTAGTGATTGGAAAATGTCTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGGAGAAAAGATTATGGGTTTAGTGATTGGAAAATGTCTACCCA  150

seq1  GTGTTTTCTTTGCTTTTTTTTTTTAAACCAAGTATAGCTACACAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTTTGCTTTTTTTTTTTAAACCAAGTATAGCTACACAGAGAAA  200

seq1  TAAATATATGATTACATTTGCAGAACAATATAATTTGCTTTGCCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATGATTACATTTGCAGAACAATATAATTTGCTTTGCCATTTTT  250

seq1  ACTTTCCATGTTTCTGTATTTATATAATCAATCTATAAAGAATTAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCATGTTTCTGTATTTATATAATCAATCTATAAAGAATTAGACTG  300

seq1  CTATAATGATTCACTTCTCAAATCTCAGCACTTGGGCAGTTGGCTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGATTCACTTCTCAAATCTCAGCACTTGGGCAGTTGGCTCTGAT  350

seq1  GGGTCTCTGTCACTCTAAGGCTAGCCTGGTCTACAAAGCAAGTTCTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGTCACTCTAAGGCTAGCCTGGTCTACAAAGCAAGTTCTAGAC  400

seq1  CAGCCAGGACAACACAGTGAAACCCTATCCTTTAAAAATAGAAAGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGACAACACAGTGAAACCCTATCCTTTAAAAATAGAAAGTATGT  450

seq1  TTTTAAAAGTTGTCATTGAGTAAAAACACAGGGTTTAATCTTATGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTGTCATTGAGTAAAAACACAGGGTTTAATCTTATGATGTG  500

seq1  TAATTTTCTGTTAAAACTGTGATATGTTATTTAATTAGTTAGATTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTGTTAAAACTGTGATATGTTATTTAATTAGTTAGATTTTTCA  550

seq1  ATATTCAAGAAGCTATTATATTAATTTTCATATATATTGATAAACTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGAAGCTATTATATTAATTTTCATATATATTGATAAACTAGAT  600

seq1  ATTGGGTAATTTGATGCTGTTTAAAACCTATACCTCTTTTGGTCACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTAATTTGATGCTGTTTAAAACCTATACCTCTTTTGGTCACCAGG  650

seq1  ATACCACTGTCCATCAGCAGATAATCTGAGAAGCCTATGCAGTGACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTGTCCATCAGCAGATAATCTGAGAAGCCTATGCAGTGACTTTG  700

seq1  ATATCTTTCTACATTTTGCTGTGCTGAGGCTGGACAGACACTCAGGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCTACATTTTGCTGTGCTGAGGCTGGACAGACACTCAGGGTTT  750

seq1  CACATTACTTGGTGGTTTTCAGAGAACCAGGGTTCAGTTTCTAGAATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTTGGTGGTTTTCAGAGAACCAGGGTTCAGTTTCTAGAATCCA  800

seq1  TTTAAGGACTCATAACTCTCAGTCACTAAGAGGAGAGTGATGTCCTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACTCATAACTCTCAGTCACTAAGAGGAGAGTGATGTCCTCTTC  850

seq1  TCACATCTCTGGAAATCGGAAGCATATGTGGTACACATTCTTTATGTACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTCTGGAAATCGGAAGCATATGTGGTACACATTCTTTATGTACG  900

seq1  C-AAAACATTCATTAGACCCAAAGTAACAGCAAACAGCTTTAAAAGACA-  948
      | ||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  CAAAAACATTCATTAGACCCAAAGTAACAGC-AACAGCTTTAAAAGACAC  949

seq1  CCACCATGTAGTTCACCACTAAAATGAGTTGTGCATTTAGCAATGTATTT  998
      |||||||||||||||||||| |||||||||||||| ||||| ||||||||
seq2  CCACCATGTAGTTCACCACT-AAATGAGTTGTGCA-TTAGCCATGTATTT  997

seq1  CTAACTAACTGCCTTAGCATTTAAAAAAAAAATGTTTGCTTCTGATCATT  1048
      || |||||||||| ||||||| ||||||||||||||||| ||||||||||
seq2  CT-ACTAACTGCC-TAGCATTAAAAAAAAAAATGTTTGC-TCTGATCATT  1044

seq1  TAGTCTTTGT-GAGACTAG-ATATTTTAAGTCAGAAGGTTAAAG--ATGG  1094
      |||||||||| |||||||| ||||||| |||||||||  |||||  ||| 
seq2  TAGTCTTTGTGGAGACTAGAATATTTT-AGTCAGAAG--TAAAGGAATGT  1091

seq1  ACACGAGAGGAGGGGGTAG-CAG-CCTCTGCATTTAATCTGGATTCTGAT  1142
      ||||   |||| ||||||| ||| |||||||| ||||||||||||| |||
seq2  ACACTGAAGGA-GGGGTAGCCAGCCCTCTGCA-TTAATCTGGATTCAGAT  1139

seq1  GGGG-CTG-ACAG--CACATCAGCTTACA  1167
      |||| ||| ||||   |||||||||||||
seq2  GGGGCCTGAACAGGCAACATCAGCTTACA  1168


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