BAC Information

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BAC

Clone NameB6Ng01-235J05
Chromosome15 (Build37)14 (Build37)
Map Location 21,738,051 - 21,738,12010,057,614 - 10,058,401
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J05.bB6Ng01-235J05.g
ACCGA047018GA047019
length906788
definitionB6Ng01-235J05.b B6Ng01-235J05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,738,051 - 21,738,120)(10,057,614 - 10,058,401)
sequence
gaattctccattgtgtaaatgttctacattttctttttttaagcatattt
ttattttgaatttttgtacaacgtagtatacataaatataatggatattt
caaatattgagcttatttctccaaacaaaatttcttcaaaaattatttgt
aaacactttcttctttttattagatattttctttatttatatttcaaatg
ttatcccctttcctgttttcccctctgaaaattccctatccccttcctct
cccccatgctcaccaaccccactcctgcttctggtcctggcattccccta
tacagggttttagagccttcacaggaccaagggccactccttccattgat
gaccgacaggaccatcctcttctacatatatggcaggagccatgggttct
tccatgtgtactctttggttggtggttttgaccctcggagctctgggggt
actagttagttaatattgttgttcctcttatggagatgcaaaccctttca
gctccttgggtcctttctctagctcctctactggtaaccctgtgctcagt
ccaatggttggctgaaagcatccacctctgtatttgtcaggcactgacag
agcctctcaggagacagctctatcaggatcctgtcagcaagcacctcttg
gcatccataatagtatatgtgtttggtgactgcatatgggatggatcccc
aggtggggcagttttttggatggcctttcattcggtatcttctccacact
ttgtcaacgtatatcatcccaatgggtattttgttcccccttctaagaag
tatggaagtatccacactttggtattccttcttcttgggcttcatatggt
ctgttaattgaatctggggattctgaaacttttgggctataatccaaaat
atcagt

gaattcaatgggcttgtactatctatctaggatgtaaagatatgaagaca
cccacctacctgctcagctctgcttctgagctttattagtgcacacagaa
aggaaaattatccccagagttgcccctggctttagaaaaatgacacactc
tctttagtattagatgattcggatttcagtaatttggaccacagctctca
ctgccaaaaaaattgtcagctccacatttttgcccgcacaggagaacttc
ttgtgaaattatatgatgactttggtgtcctcataatggtgcagcttgga
aaggtgagttaaggtggaattcagcaagaacacagagaagtggacagaaa
aggttggtgtagtgaggcagctcagaacctgcaggaggaggcaagggatg
tgagcacacaaacccactgatgtagcaggtaggttttgtttatttgtttt
taatatcatcagccctgcaaaggtacacttctctgtgctggctcagtttc
cctctccccaatttctaagaagaactccgtgtggactctattttgataaa
tttgtatgttgtagaactgggatactggatgtatctatgcacacactcat
taacctgattatatgaatatagatatactctcacatgtgtacatgcctag
catgtatcatccatgattgtctgcactatgcatgcatctcttgtttcttt
ctttcaataaatatgttcttcagattagaatttctagtagaaagatgatg
agaggtactttatggtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21738051_21738120
seq2: B6Ng01-235J05.b_68_253

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTACATTTTCTTTTTTTAAGCATATTTTTATTTTGAATTTTTGTACAA  50

seq1  ---------------------------------------------TTCT-  4
                                                   |||| 
seq2  CGTAGTATACATAAATATAATGGATATTTCAAATATTGAGCTTATTTCTC  100

seq1  -----ACATTTTCTT---------TTTTT------TTTCAAATTTTTATT  34
           | | ||||||         ||| |      ||||   ||||||||
seq2  CAAACAAAATTTCTTCAAAAATTATTTGTAAACACTTTCTTCTTTTTATT  150

seq1  AGATATTTTCTTTATTTACATTTCAAATGCTATCCC  70
      |||||||||||||||||| |||||||||| ||||||
seq2  AGATATTTTCTTTATTTATATTTCAAATGTTATCCC  186


seq1: chr14_10057614_10058401
seq2: B6Ng01-235J05.g_65_852

seq1  GAATTCAATGGGCTTGTACTATCTATCTAGGATGTAAAGATATGAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGCTTGTACTATCTATCTAGGATGTAAAGATATGAAGACA  50

seq1  CCCACCTACCTGCTCAGCTCTGCTTCTGAGCTTTATTAGTGCACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTACCTGCTCAGCTCTGCTTCTGAGCTTTATTAGTGCACACAGAA  100

seq1  AGGAAAATTATCCCCAGAGTTGCCCCTGGCTTTAGAAAAATGACACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTATCCCCAGAGTTGCCCCTGGCTTTAGAAAAATGACACACTC  150

seq1  TCTTTAGTATTAGATGATTCGGATTTCAGTAATTTGGACCACAGCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTATTAGATGATTCGGATTTCAGTAATTTGGACCACAGCTCTCA  200

seq1  CTGCCAAAAAAATTGTCAGCTCCACATTTTTGCCCGCACAGGAGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAAAAATTGTCAGCTCCACATTTTTGCCCGCACAGGAGAACTTC  250

seq1  TTGTGAAATTATATGATGACTTTGGTGTCCTCATAATGGTGCAGCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATTATATGATGACTTTGGTGTCCTCATAATGGTGCAGCTTGGA  300

seq1  AAGGTGAGTTAAGGTGGAATTCAGCAAGAACACAGAGAAGTGGACAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGTTAAGGTGGAATTCAGCAAGAACACAGAGAAGTGGACAGAAA  350

seq1  AGGTTGGTGTAGTGAGGCAGCTCAGAACCTGCAGGAGGAGGCAAGGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTGTAGTGAGGCAGCTCAGAACCTGCAGGAGGAGGCAAGGGATG  400

seq1  TGAGCACACAAACCCACTGATGTAGCAGGTAGGTTTTGTTTATTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACACAAACCCACTGATGTAGCAGGTAGGTTTTGTTTATTTGTTTT  450

seq1  TAATATCATCAGCCCTGCAAAGGTACACTTCTCTGTGCTGGCTCAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATCAGCCCTGCAAAGGTACACTTCTCTGTGCTGGCTCAGTTTC  500

seq1  CCTCTCCCCAATTTCTAAGAAGAACTCCGTGTGGACTCTATTTTGATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCAATTTCTAAGAAGAACTCCGTGTGGACTCTATTTTGATAAA  550

seq1  TTTGTATGTTGTAGAACTGGGATACTGGATGTATCTATGCACACACTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTTGTAGAACTGGGATACTGGATGTATCTATGCACACACTCAT  600

seq1  TAACCTGATTATATGAATATAGATATACTCTCACATGTGTACATGCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGATTATATGAATATAGATATACTCTCACATGTGTACATGCCTAG  650

seq1  CATGTATCATCCATGATTGTCTGCACTATGCATGCATCTCTTGTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCATCCATGATTGTCTGCACTATGCATGCATCTCTTGTTTCTTT  700

seq1  CTTTCAATAAATATGTTCTTCAGATTAGAATTTCTAGTAGAAAGATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATAAATATGTTCTTCAGATTAGAATTTCTAGTAGAAAGATGATG  750

seq1  AGAGGTACTTTATGGTGTGTGTGTGTGTGTGTGTGTGT  788
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTTTATGGTGTGTGTGTGTGTGTGTGTGTGT  788


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