BAC Information

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BAC

Clone NameB6Ng01-235L18
Chromosome15 (Build37)
Map Location 79,364,888 - 79,366,010
singlet/doubletsinglet
Overlap geneDdx17
Upstream geneSstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3
Downstream geneDmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235L18.bB6Ng01-235L18.g
ACCGA047136GA047137
length1,153923
definitionB6Ng01-235L18.b B6Ng01-235L18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgccatttgtggtgggttttctccctccttttgatttttacaag
gcagcaaacaaaggggcccaaaacaagcactgatgttgagtaacaagaaa
cagactcaggcaccttccctctccctcacttgaatgagggagggtgggat
gaagagtctaagttattctaatggtagccaattgattttaaaatatgcaa
aaggacagaacaaatttttaattgtctaggcaagatgcacaaagaagcta
ccagcacatagcaagcctgttttaaaaaccaccattactgaaagcttttt
atgtaaattgctttcaggcttctgcctcctctcccaggccccggttctaa
gggcacagacccagagatgacctcggaaggaagagacaacttcccaccat
ggctgcaggtcactcactacctcaaggaggagtaaaattgaatggataaa
aaggctccatcactgctgaactcatttcaatacttatcatctctatgtta
aattgcacagggaaacttggtacttctcaccttactcagcaggaaattaa
acacatcaataatggttccctcccaacagaaatcaccccagctctctaaa
acaagaccctgctatttaacgtaggttgccctcaaacaaatgaatctctt
gcctaaggtttccaagtgctggaatttacaggcatatactaccatgccta
gctgtaagaaatctttttctggagacagagcctagcagtgtagccctggc
tggtctacaactcactatgcataccaggtttgcctcaaactaaggaaacc
atgcctctgtctcccaaagtgtggggatcaaaggtgtgtatttaccacac
ccagataattccttatacatgtaaacattcttgggtcagcgtgtcatagg
ctggctatctgtatgtattttaaagcaggagttgaaaaccttcaaattat
cttcaggatcaaggtcctaaacccggaaaacatgtcctaagggccaacaa
cggggtaaaggggagggataactgaaccactcaatatttactggaagtta
ttactgggccatgccagactggaatagaatgactttttatattagaggag
ccattctaaacccccttgagatgaatgttccatggaagtgtgtctccctg
ttt
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagttgaa
attcttaggagtccagtggtgtggggcatgcagagatattccttctaagg
tgaaagataagttattgcacctggcccctcctacaaccaagaaagaagca
caacgtttagtgggtctattgggattctggagacaacacatcccttcact
tgggtgtgttacttaggtctatttaccaagtgactcggaaagctgctagc
ttttgtgtggggccctggaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79364888_79366010
seq2: B6Ng01-235L18.b_43_1195

seq1  GAATTCTGCCATTTGTGGTGGGTTTTCTCCCTCCTTTTGATTTTTACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCATTTGTGGTGGGTTTTCTCCCTCCTTTTGATTTTTACAAG  50

seq1  GCAGCAAACAAAGGGGCCCAAAACAAGCACTGATGTTGAGTAACAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAACAAAGGGGCCCAAAACAAGCACTGATGTTGAGTAACAAGAAA  100

seq1  CAGACTCAGGCACCTTCCCTCTCCCTCACTTGAATGAGGGAGGGTGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGGCACCTTCCCTCTCCCTCACTTGAATGAGGGAGGGTGGGAT  150

seq1  GAAGAGTCTAAGTTATTCTAATGGTAGCCAATTGATTTTAAAATATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCTAAGTTATTCTAATGGTAGCCAATTGATTTTAAAATATGCAA  200

seq1  AAGGACAGAACAAATTTTTAATTGTCTAGGCAAGATGCACAAAGAAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGAACAAATTTTTAATTGTCTAGGCAAGATGCACAAAGAAGCTA  250

seq1  CCAGCACATAGCAAGCCTGTTTTAAAAACCACCATTACTGAAAGCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACATAGCAAGCCTGTTTTAAAAACCACCATTACTGAAAGCTTTTT  300

seq1  ATGTAAATTGCTTTCAGGCTTCTGCCTCCTCTCCCAGGCCCCGGTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTGCTTTCAGGCTTCTGCCTCCTCTCCCAGGCCCCGGTTCTAA  350

seq1  GGGCACAGACCCAGAGATGACCTCGGAAGGAAGAGACAACTTCCCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGACCCAGAGATGACCTCGGAAGGAAGAGACAACTTCCCACCAT  400

seq1  GGCTGCAGGTCACTCACTACCTCAAGGAGGAGTAAAATTGAATGGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGGTCACTCACTACCTCAAGGAGGAGTAAAATTGAATGGATAAA  450

seq1  AAGGCTCCATCACTGCTGAACTCATTTCAATACTTATCATCTCTATGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCATCACTGCTGAACTCATTTCAATACTTATCATCTCTATGTTA  500

seq1  AATTGCACAGGGAAACTTGGTACTTCTCACCTTACTCAGCAGGAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACAGGGAAACTTGGTACTTCTCACCTTACTCAGCAGGAAATTAA  550

seq1  ACACATCAATAATGGTTCCCTCCCAACAGAAATCACCCCAGCTCTCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAATAATGGTTCCCTCCCAACAGAAATCACCCCAGCTCTCTAAA  600

seq1  ACAAGACCCTGCTATTTAACGTAGGTTGCCCTCAAACAAATGAATCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCCTGCTATTTAACGTAGGTTGCCCTCAAACAAATGAATCTCTT  650

seq1  GCCTAAGGTTTCCAAGTGCTGGAATTTACAGGCATATACTACCATGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGTTTCCAAGTGCTGGAATTTACAGGCATATACTACCATGCCTA  700

seq1  GCTGTAAGAAATCTTTTTCTGGAGACAGAGCCTAGCAGTGTAGCCCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGAAATCTTTTTCTGGAGACAGAGCCTAGCAGTGTAGCCCTGGC  750

seq1  TGGTCTACAACTCACTATGCATACCAGGTTTGCCTCAAACTAAGGAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAACTCACTATGCATACCAGGTTTGCCTCAAACTAAGGAAACC  800

seq1  ATGCCTCTGTCTCCC-AAGTGTGGGGATCAAAGGTGTGTA-TTACCACAC  848
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ATGCCTCTGTCTCCCAAAGTGTGGGGATCAAAGGTGTGTATTTACCACAC  850

seq1  CCAGATAA-TCCTTATACATGTAAACATTC-TGGGTCAGCGTGTCATAGG  896
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGATAATTCCTTATACATGTAAACATTCTTGGGTCAGCGTGTCATAGG  900

seq1  CTGGCTATCTGTATGTATTTTAAAGCAGGAGTTGAAAA-CTTCAGATTAT  945
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CTGGCTATCTGTATGTATTTTAAAGCAGGAGTTGAAAACCTTCAAATTAT  950

seq1  CTTCA-GATCAA-GTTCTAAA-CCGGAAAACATGT-CTAAGGCCAAACAA  991
      ||||| |||||| || ||||| ||||||||||||| |||||| | |||||
seq2  CTTCAGGATCAAGGTCCTAAACCCGGAAAACATGTCCTAAGGGCCAACAA  1000

seq1  C-GGGTAAA-GGGAGGGATAACTGA--CAATC-ATA-TTACT-GAAG-TA  1033
      | ||||||| |||||||||||||||  || || ||| ||||| |||| ||
seq2  CGGGGTAAAGGGGAGGGATAACTGAACCACTCAATATTTACTGGAAGTTA  1050

seq1  ATACTGGGCAATG-CAGACT-GAATAGAATGACATTATATA-GAGAG---  1077
       |||||||| ||| |||||| |||||||||||| || ||||  ||||   
seq2  TTACTGGGCCATGCCAGACTGGAATAGAATGACTTTTTATATTAGAGGAG  1100

seq1  -CAATCAAAACCCC--TGAG-TGAATGTT-CAT-GAAGTG-GTCTCCCTG  1120
       || || |||||||  |||| |||||||| ||| |||||| |||||||||
seq2  CCATTCTAAACCCCCTTGAGATGAATGTTCCATGGAAGTGTGTCTCCCTG  1150

seq1  TTT  1123
      |||
seq2  TTT  1153