BAC Information

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BAC

Clone NameB6Ng01-236O03
Chromosome15 (Build37)
Map Location 100,869,704 - 100,959,933
singlet/doubletdoublet
Overlap geneScn8a, EG668225, Ankrd33, Acvrl1
Upstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236O03.bB6Ng01-236O03.g
ACCGA047991GA047992
length1,0861,155
definitionB6Ng01-236O03.b B6Ng01-236O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,869,704 - 100,870,787)(100,958,760 - 100,959,933)
sequence
gaattcacacgtagtaaaactagaaaaatactaaaaccgctgaggcctgc
ggaggcccctcgggtcccgtgctggccacggataagcctgctcactgagc
acacggtctctgcttttctgtgctctctacgcttctatgtttggaacatg
tcattgtttcattacaaggattctgtgcattctacacggcccattgagcg
tctgcacggtaagaggagggaagggttgtgcccgactccagtaatcacat
cctctgttcctctctcaggaatgttcctggctgatatcattgagaagtac
ttcgtctccccgaccctattccgcgtcatccgattggcccgcatcgggcg
catcttgcgtctgatcaagggcgccaaagggatccgcaccctgctctttg
ccttaatgatgtcgctgcccgccctgttcaacatcggcctcctgctcttc
ctggtcatgttcatcttctccatctttgggatgtccaacttcgcgtacgt
gaagcacgaggccggcattgatgacatgttcaacttcgagacgtttggca
acagcatgatctgcctgttccagatcacgacctctgctggttgggatggc
ttactgctgccaatcctgaaccgcccccctgactgcagcttggacaagga
gcacccaggaagtggcttcaaaggggactgcgggaacccctccgtgggca
tcttcttcttcgtcagctacatcatcatctcctttctgatcgtggtaaac
atgtacattgccatcatcttggagaacttcagcgtagccacagaggaaag
cgccgatcctctgagcgaggacgacttcgagactttctatgagatctggg
agaagtttgatcctgatgccacccagttcatcgagtactgtaagctggcc
gactttgccgacgccctggagcatccgctccgagtacccaagcccaacac
catcgagctcatcgtcatggacctgcccatggtgagcggagatcgaattc
cactgcttggacatccttttcgccttcaccaagcgagtcctggggagaca
gtggggagttggacattctgcggcagcagatggagg
gaattctgtgaccctatagagataaggattggggtgccaggttaagtggt
ctctatgaggaggttccgcaagggaagtcgctcctatgtcaacagagcac
cctggagctcaggagggaagaatctttcagtcccgttttacctttataga
taagggtagaagagttaatctcggcagggaagagaagctaaaggcctcag
gatacctagcaaaaaaagttttttgattccccatccgtgctcgacccgcc
cccttccacgctcaggtcggggtagcagggaggtgtgtgtccacaaccag
gggactgctgactgtcttgcccggctaaaactgaccctgccacgcgccgt
ctgagaggtctttgagatccacataaagaagggtccccctgagaccaggg
acaggtctccctgcccggcccagcggcactccgactcacctttggacagg
gcgactcgacccccgcctctccttgccggaggcggccggggtctcacgtc
cagagccggcctgtggggccgggaaaggtctcgatctgcgcggctggcgc
ggcggcctccggggactgggaaggggctggagcaaaatgtttcttattct
agcttcttcctgcctggcccggctccaccactccctcctaataactcgtt
tcctattgcccagtacgcctcccagcagcagggctcggctctagagggct
gcagaccgagtgcgaccaccccagcccctccctgccacgaagggacaggc
ttcgaacccaggcattggggtcccgtgcgtcctgggtaggaacgtaggga
ctgagctagctgcggaagcgtcgctctaggccaggagagggtagccttgc
acccagaggcagaaatctagattcgtgagggcttcagggagggacccgcg
tgaggtagcagcccaccttacctgtgctcactcctaaggaacagcgctaa
gaagctgagtttggggctgggagtgtctgctcagagtggctccgcccttt
ggattctcagttggctaatcttttgcctcaagtcagcctcaccttaatac
tttgttcctttcgtgtcacagtgctggccatcaacgctcagctcggccta
agacctagatcggtccgatctgatcagtctgatctgtgcacctcaaggca
tgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100869704_100870787
seq2: B6Ng01-236O03.b_45_1130

seq1  GAATTCACACGTAGTAAAACTAGAAAAATACTAAAACCGCTGAGGCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGTAGTAAAACTAGAAAAATACTAAAACCGCTGAGGCCTGC  50

seq1  GGAGGCCCCTCGGGTCCCGTGCTGGCCACGGATAAGCCTGCTCACTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCCTCGGGTCCCGTGCTGGCCACGGATAAGCCTGCTCACTGAGC  100

seq1  ACACGGTCTCTGCTTTTCTGTGCTCTCTACGCTTCTATGTTTGGAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTCTCTGCTTTTCTGTGCTCTCTACGCTTCTATGTTTGGAACATG  150

seq1  TCATTGTTTCATTACAAGGATTCTGTGCATTCTACACGGCCCATTGAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTCATTACAAGGATTCTGTGCATTCTACACGGCCCATTGAGCG  200

seq1  TCTGCACGGTAAGAGGAGGGAAGGGTTGTGCCCGACTCCAGTAATCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACGGTAAGAGGAGGGAAGGGTTGTGCCCGACTCCAGTAATCACAT  250

seq1  CCTCTGTTCCTCTCTCAGGAATGTTCCTGGCTGATATCATTGAGAAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTCCTCTCTCAGGAATGTTCCTGGCTGATATCATTGAGAAGTAC  300

seq1  TTCGTCTCCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCATCGGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTCCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCATCGGGCG  350

seq1  CATCTTGCGTCTGATCAAGGGCGCCAAAGGGATCCGCACCCTGCTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCGTCTGATCAAGGGCGCCAAAGGGATCCGCACCCTGCTCTTTG  400

seq1  CCTTAATGATGTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGATGTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCTCTTC  450

seq1  CTGGTCATGTTCATCTTCTCCATCTTTGGGATGTCCAACTTCGCGTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATGTTCATCTTCTCCATCTTTGGGATGTCCAACTTCGCGTACGT  500

seq1  GAAGCACGAGGCCGGCATTGATGACATGTTCAACTTCGAGACGTTTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGAGGCCGGCATTGATGACATGTTCAACTTCGAGACGTTTGGCA  550

seq1  ACAGCATGATCTGCCTGTTCCAGATCACGACCTCTGCTGGTTGGGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGATCTGCCTGTTCCAGATCACGACCTCTGCTGGTTGGGATGGC  600

seq1  TTACTGCTGCCAATCCTGAACCGCCCCCCTGACTGCAGCTTGGACAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGCCAATCCTGAACCGCCCCCCTGACTGCAGCTTGGACAAGGA  650

seq1  GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAACCCCTCCGTGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAACCCCTCCGTGGGCA  700

seq1  TCTTCTTCTTCGTCAGCTACATCATCATCTCCTTTCTGATCGTGGTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCGTCAGCTACATCATCATCTCCTTTCTGATCGTGGTAAAC  750

seq1  ATGTACATTGCCATCATCTTGGAGAACTTCAGCGTAGCCACAGAGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTGCCATCATCTTGGAGAACTTCAGCGTAGCCACAGAGGAAAG  800

seq1  CGCCGATCCTCTGAGCGAGGACGACTTCGAGACTTTCTATGAGATCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGATCCTCTGAGCGAGGACGACTTCGAGACTTTCTATGAGATCTGGG  850

seq1  AGAAGTTTGATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGCTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTGATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGCTGGCC  900

seq1  GACTTTGCCGACGCCCTGGAGCATCCGCTCCGAGTACCCAAGCCCAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCCGACGCCCTGGAGCATCCGCTCCGAGTACCCAAGCCCAACAC  950

seq1  CATCGAGCTCATCGCCATGGACCTGCCCATGGTGAGCGGAGATCGAA-TC  999
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  CATCGAGCTCATCGTCATGGACCTGCCCATGGTGAGCGGAGATCGAATTC  1000

seq1  CACTGCTTGGACATCCTTTTCGCCTTCACCAAGCGAGTCCT-GGGAGACA  1048
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTGCTTGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGGAGACA  1050

seq1  GTGGGGAGTTGGACATCCTGCGGCAGCAGATGGAGG  1084
      |||||||||||||||| |||||||||||||||||||
seq2  GTGGGGAGTTGGACATTCTGCGGCAGCAGATGGAGG  1086

seq1: chr15_100958760_100959933
seq2: B6Ng01-236O03.g_64_1218 (reverse)

seq1  TGTCAAGCCTTGAGGTGCACAGACCAGACTGACTCAGAACGGACCTATCT  50
      ||||| ||||||||||||||||| |||||||| ||||| |||||| ||||
seq2  TGTCATGCCTTGAGGTGCACAGATCAGACTGA-TCAGATCGGACCGATCT  49

seq1  AGGTTTCTTTAGCCCGAGGCTGAGCGTTGATGGCCAGCACTGTGGACAAC  100
      ||||    |||| |||| ||||||||||||||||||||||||| ||||  
seq2  AGGT---CTTAGGCCGA-GCTGAGCGTTGATGGCCAGCACTGT-GACA--  92

seq1  GGAAGGGAACAAAAGTATTAAGGGTGAAGGGCTGGAATTTGGAGGCAAAA  150
       ||| ||||| |||||||||| |||||  |||||  | || ||||| |||
seq2  CGAAAGGAAC-AAAGTATTAA-GGTGA--GGCTG--ACTT-GAGGC-AAA  134

seq1  AGATTTAAGCCAACTGGAGAATCCAAAGGGCGGAGCCAACTCTGGAGCAG  200
      |||||  |||||||| ||||||||||||||||||||| ||||| ||||||
seq2  AGATT--AGCCAACT-GAGAATCCAAAGGGCGGAGCC-ACTCT-GAGCAG  179

seq1  ACACTCCCAG-CCCAAACTCAGCTTTCTTAGCGCTGTTCCTTAGGAGTGA  249
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACACTCCCAGCCCCAAACTCAGC-TTCTTAGCGCTGTTCCTTAGGAGTGA  228

seq1  GCACAGGTAA-GTTGGCTGCTACCTCACGCGGGTCCCTCCCTGAAGCCCT  298
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTAAGGTGGGCTGCTACCTCACGCGGGTCCCTCCCTGAAGCCCT  278

seq1  CACGAATCTAGATTTCTGCCTCTGGGTGC-AGGCTACCCTCTCCTGGCCT  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACGAATCTAGATTTCTGCCTCTGGGTGCAAGGCTACCCTCTCCTGGCCT  328

seq1  AGAGCGACGCTTCCGCAGCTAGCTCAGTCCCTACGTTCCTACCCAGGACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGACGCTTCCGCAGCTAGCTCAGTCCCTACGTTCCTACCCAGGACG  378

seq1  CACGGGACCCCAATGCCTGGGTTCGAAGCCTGTCCCTTCGTGGCAGGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGACCCCAATGCCTGGGTTCGAAGCCTGTCCCTTCGTGGCAGGGAG  428

seq1  GGGCTGGGGTGGTCGCACTCGGTCTGCAGCCCTCTAGAGCCGAGCCCTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGTGGTCGCACTCGGTCTGCAGCCCTCTAGAGCCGAGCCCTGC  478

seq1  TGCTGGGAGGCGTACTGGGCAATAGGAAACGAGTTATTAGGAGGGAGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGGCGTACTGGGCAATAGGAAACGAGTTATTAGGAGGGAGTGG  528

seq1  TGGAGCCGGGCCAGGCAGGAAGAAGCTAGAATAAGAAACATTTTGCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCGGGCCAGGCAGGAAGAAGCTAGAATAAGAAACATTTTGCTCCA  578

seq1  GCCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGAC  628

seq1  CTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCC  678

seq1  GGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAGGTGAGTCGGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAGGTGAGTCGGAGT  728

seq1  GCCGCTGGGCCGGGCAGGGAGACCTGTCCCTGGTCTCAGGGGGACCCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGGGCCGGGCAGGGAGACCTGTCCCTGGTCTCAGGGGGACCCTTC  778

seq1  TTTATGTGGATCTCAAAGACCTCTCAGACGGCGCGTGGCAGGGTCAGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGGATCTCAAAGACCTCTCAGACGGCGCGTGGCAGGGTCAGTTT  828

seq1  TAGCCGGGCAAGACAGTCAGCAGTCCCCTGGTTGTGGACACACACCTCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGGGCAAGACAGTCAGCAGTCCCCTGGTTGTGGACACACACCTCCC  878

seq1  TGCTACCCCGACCTGAGCGTGGAAGGGGGCGGGTCGAGCACGGATGGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCCGACCTGAGCGTGGAAGGGGGCGGGTCGAGCACGGATGGGGA  928

seq1  ATCAAAAAACTTTTTTTGCTAGGTATCCTGAGGCCTTTAGCTTCTCTTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAACTTTTTTTGCTAGGTATCCTGAGGCCTTTAGCTTCTCTTCC  978

seq1  CTGCCGAGATTAACTCTTCTACCCTTATCTATAAAGGTAAAACGGGACTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAGATTAACTCTTCTACCCTTATCTATAAAGGTAAAACGGGACTG  1028

seq1  AAAGATTCTTCCCTCCTGAGCTCCAGGGTGCTCTGTTGACATAGGAGCGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTTCCCTCCTGAGCTCCAGGGTGCTCTGTTGACATAGGAGCGA  1078

seq1  CTTCCCTTGCGGAACCTCCTCATAGAGACCACTTAACCTGGCACCCCAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTGCGGAACCTCCTCATAGAGACCACTTAACCTGGCACCCCAAT  1128

seq1  CCTTATCTCTATAGGGTCACAGAATTC  1174
      |||||||||||||||||||||||||||
seq2  CCTTATCTCTATAGGGTCACAGAATTC  1155