BAC Information

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BAC

Clone NameB6Ng01-237E10
Chromosome15 (Build37)
Map Location 102,779,504 - 102,885,196
singlet/doubletdoublet
Overlap geneHoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Upstream geneKrt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237E10.bB6Ng01-237E10.g
ACCGA048281GA048282
length6491,106
definitionB6Ng01-237E10.b B6Ng01-237E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,884,549 - 102,885,196)(102,779,504 - 102,780,600)
sequence
gaattctcacaacacccaggggaaccagtaataagctaattaccaccctt
cagctcctttccttcccatccacaaagttaccctctcagaacatttacag
aactccctcttgtgttttatacctgcctaacacattctcctcgattccca
tgtctcctcctggggtcccacaattccagagaaagggccgggaagcagag
tagttgaggaccagagacatccacttttctgtggttgttgtattaatatt
ttttttcctgttactgcaacagtgtttgagagaagaagcaattctttacc
cctttggctcttctttttagaaagactctttagaaagtttgcgctgctat
gatgtgaaggtgcaggggcaggtggggactgtaactactcctgaggaggg
aacacctacccagtgtctttaaggagtgcatgtcagactgcagacctgca
aatcccacatacattttggttttggtctccttttgcaatggaaagaaaga
aaagaatagagggaggagaaaacaggagaggggaaggagggaaaggagtg
tgtatgtgtgcatatgtatgtgtattcatgtgtgtgcatgtgtgtgtgca
catgtgtgcatgcatgtgtgtgtatttccttgctgcgaatataacattt
gaattctgctcacagcattccaaatggttggaatggcctgcggaggcctt
gtgaagggggaccccagaaagtcaaaaggggttactagctgggatgcttc
cccatagtgtgggggagaaactcatactcagacctcagcctgaagctctt
tgaaaaactgctctttggagatttaggggacttgaaaagagtaaggcacc
agacaccctatgaaagccaaggctgtgactgtgacagggaggagaacctg
agggggcaagaggttgagaaggtatcaccttaaaccatttctcccagaga
acacacacacacacacacacacacacacacacacacacacacacacacac
acacggctctaatactgaaaaacaccagatgatctgcttggaagggacat
aaaccggccaagcggatgcaggttaataaaacccgaaaaaccccagacag
gaacacttaaaatgcccagaacaaagaacaccgtgacaaattctcaccca
acacacaagtacacgcacaagaatattcctaggcagagaaagaaagagac
ctttcctacctcaggtctccacccgtggacacttaggtatacctgcacag
ctccaagaacaaatttgttcatgcttctaaactgacccaaacaaaccccc
agtgatcgccggcaggcaccgactgcactgcacacaccacggagacagtc
cgtatcccctgagcctcactaatgcaagatccagatccatacccggagat
aaaagtctagacaaatagacggctgtttatgacaacgaggctctccaagt
ttggggccaggcgataaatctctggcgaatcttcctgtaactcaacttct
ggctgtagtgaagagagaaccacggagaccaccggagacgaccgatgggg
ggagagacttaaagcggggagctgagggtgcttttccttgtgcagtttct
taggctgggccataagccccgtccacgcaaggcagtcccactggtgggaa
gcttcgcggtggagtttcctagcacaggcgagtcagagctctttcctgcc
cgccctggcaattaggctcagaggtccatgtgcaggcagagccagggcct
gaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102884549_102885196
seq2: B6Ng01-237E10.b_49_696 (reverse)

seq1  AATGTTATATTCGCAGCAAGGAAATACACACACATGCATGCACACATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATATTCGCAGCAAGGAAATACACACACATGCATGCACACATGTG  50

seq1  CACACACACATGCACACACATGAATACACATACATATGCACACATACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATGCACACACATGAATACACATACATATGCACACATACACA  100

seq1  CTCCTTTCCCTCCTTCCCCTCTCCTGTTTTCTCCTCCCTCTATTCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCTCCTTCCCCTCTCCTGTTTTCTCCTCCCTCTATTCTTTTC  150

seq1  TTTCTTTCCATTGCAAAAGGAGACCAAAACCAAAATGTATGTGGGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCATTGCAAAAGGAGACCAAAACCAAAATGTATGTGGGATTTG  200

seq1  CAGGTCTGCAGTCTGACATGCACTCCTTAAAGACACTGGGTAGGTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCAGTCTGACATGCACTCCTTAAAGACACTGGGTAGGTGTTCC  250

seq1  CTCCTCAGGAGTAGTTACAGTCCCCACCTGCCCCTGCACCTTCACATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGAGTAGTTACAGTCCCCACCTGCCCCTGCACCTTCACATCAT  300

seq1  AGCAGCGCAAACTTTCTAAAGAGTCTTTCTAAAAAGAAGAGCCAAAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGCAAACTTTCTAAAGAGTCTTTCTAAAAAGAAGAGCCAAAGGGG  350

seq1  TAAAGAATTGCTTCTTCTCTCAAACACTGTTGCAGTAACAGGAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTGCTTCTTCTCTCAAACACTGTTGCAGTAACAGGAAAAAAAA  400

seq1  TATTAATACAACAACCACAGAAAAGTGGATGTCTCTGGTCCTCAACTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACAACAACCACAGAAAAGTGGATGTCTCTGGTCCTCAACTACT  450

seq1  CTGCTTCCCGGCCCTTTCTCTGGAATTGTGGGACCCCAGGAGGAGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCGGCCCTTTCTCTGGAATTGTGGGACCCCAGGAGGAGACATG  500

seq1  GGAATCGAGGAGAATGTGTTAGGCAGGTATAAAACACAAGAGGGAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCGAGGAGAATGTGTTAGGCAGGTATAAAACACAAGAGGGAGTTCT  550

seq1  GTAAATGTTCTGAGAGGGTAACTTTGTGGATGGGAAGGAAAGGAGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTTCTGAGAGGGTAACTTTGTGGATGGGAAGGAAAGGAGCTGAA  600

seq1  GGGTGGTAATTAGCTTATTACTGGTTCCCCTGGGTGTTGTGAGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTAATTAGCTTATTACTGGTTCCCCTGGGTGTTGTGAGAATTC  648

seq1: chr15_102779504_102780600
seq2: B6Ng01-237E10.g_67_1172

seq1  GAATTCTGCTCACAGCATTCCAAATGGTTGGAATGGCCTGCGGAGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCACAGCATTCCAAATGGTTGGAATGGCCTGCGGAGGCCTT  50

seq1  GTGAAGGGGGACCCCAGAAAGTCAAAAGGGGTTACTAGCTGGGATGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGGGACCCCAGAAAGTCAAAAGGGGTTACTAGCTGGGATGCTTC  100

seq1  CCCATAGTGTGGGGGAGAAACTCATACTCAGACCTCAGCCTGAAGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTGTGGGGGAGAAACTCATACTCAGACCTCAGCCTGAAGCTCTT  150

seq1  TGAAAAACTGCTCTTTGGAGATTTAGGGGACTTGAAAAGAGTAAGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACTGCTCTTTGGAGATTTAGGGGACTTGAAAAGAGTAAGGCACC  200

seq1  AGACACCCTATGAAAGCCAAGGCTGTGACTGTGACAGGGAGGAGAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTATGAAAGCCAAGGCTGTGACTGTGACAGGGAGGAGAACCTG  250

seq1  AGGGGGCAAGAGGTTGAGAAGGTATCACCTTAAACCATTTCTCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCAAGAGGTTGAGAAGGTATCACCTTAAACCATTTCTCCCAGAGA  300

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  350

seq1  ACACGGCTCTAATACTGAAAAACACCAGATGATCTGCTTGGAAGGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCTCTAATACTGAAAAACACCAGATGATCTGCTTGGAAGGGACAT  400

seq1  AAACCGGCCAAGCGGATGCAGGTTAATAAAACCCGAAAAACCCCAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGGCCAAGCGGATGCAGGTTAATAAAACCCGAAAAACCCCAGACAG  450

seq1  GAACACTTAAAATGCCCAGAACAAAGAACACCGTGACAAATTCTCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTAAAATGCCCAGAACAAAGAACACCGTGACAAATTCTCACCCA  500

seq1  ACACACAAGTACACGCACAAGAATATTCCTAGGCAGAGAAAGAAAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGTACACGCACAAGAATATTCCTAGGCAGAGAAAGAAAGAGAC  550

seq1  CTTTCCTACCTCAGGTCTCCACCCGTGGACACTTAGGTATACCTGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACCTCAGGTCTCCACCCGTGGACACTTAGGTATACCTGCACAG  600

seq1  CTCCAAGAACAAATTTGTTCATGCTTCTAAACTGACCCAAACAAACCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAACAAATTTGTTCATGCTTCTAAACTGACCCAAACAAACCCCC  650

seq1  AGTGATCGCCGGCAGGCACCGACTGCACTGCACACACCACGGAGACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCGCCGGCAGGCACCGACTGCACTGCACACACCACGGAGACAGTC  700

seq1  CGTATCCCCTGAGCCTCACTAATGCAAGATCCAGATCCATACCCGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCCCTGAGCCTCACTAATGCAAGATCCAGATCCATACCCGGAGAT  750

seq1  AAAAGTCTAGAC-AATAGACGGCTGTTTATGACAACGAGGCTCTCCAAGT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTAGACAAATAGACGGCTGTTTATGACAACGAGGCTCTCCAAGT  800

seq1  TTGGGGCCAGGCGATAAATCTCTGGCGAATCTTCCTGTAACTCAACTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCAGGCGATAAATCTCTGGCGAATCTTCCTGTAACTCAACTTCT  850

seq1  GGCTGTAGTGAAGAGAGAACCACGGAGACCA-CGGAGACGACCGAT-GGG  897
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GGCTGTAGTGAAGAGAGAACCACGGAGACCACCGGAGACGACCGATGGGG  900

seq1  GGAGAGACTTAAAGC-GGGAGCTGAAGGTGC-TTTCCTTGTGCAG-TTCT  944
      ||||||||||||||| ||||||||| ||||| ||||||||||||| ||||
seq2  GGAGAGACTTAAAGCGGGGAGCTGAGGGTGCTTTTCCTTGTGCAGTTTCT  950

seq1  TAGGCT-GGCCATAAGCCCCGTCCACGCAAGGCAGTCCCACTG--TGGAA  991
      |||||| ||||||||||||||||||||||||||||||||||||   ||||
seq2  TAGGCTGGGCCATAAGCCCCGTCCACGCAAGGCAGTCCCACTGGTGGGAA  1000

seq1  GCTTCGC-GTGGAGTTTCCTAGCACAGGCGAGTCAGAGCTCCTTTCTGCC  1040
      ||||||| ||||||||||||||||||||||||||||||||| || |||||
seq2  GCTTCGCGGTGGAGTTTCCTAGCACAGGCGAGTCAGAGCTCTTTCCTGCC  1050

seq1  CGCCCTGGCATTAGGGCTCAGAAGTCAATGTGCAGGCAGAAGGCAGGGCC  1090
      |||||||||| |  |||||||| ||| |||||||||||| || |||||||
seq2  CGCCCTGGCAATTAGGCTCAGAGGTCCATGTGCAGGCAG-AGCCAGGGCC  1099

seq1  TGAAAGC  1097
      |||||||
seq2  TGAAAGC  1106