BAC Information

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BAC

Clone NameB6Ng01-237F18
Chromosome15 (Build37)
Map Location 16,581,871 - 16,763,468
singlet/doubletdoublet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237F18.bB6Ng01-237F18.g
ACCGA048339GA048340
length1,0571,113
definitionB6Ng01-237F18.b B6Ng01-237F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,581,871 - 16,582,727)(16,762,333 - 16,763,468)
sequence
gaattcaaggcccatacctaaacatagtaaaattaatatacagcaaacca
gtagccaacatcaaactaaatcaagagaaacttgaaagaatcacactaaa
atcagggactagaaaagactgcctacactcacatctaatcagtctggtag
ttcctcagaaaattggacatagtactacctgagtacccagctatcagact
cctggacattgacctaaaagatgctccaatatattaacaaggacacatgc
tccaccatgttcttagaaaccttaattatagtagccagaagatggaagca
acccagatatccctcaacagaggaatggatacagaaaatgtggtacattt
acacaatggagtactacccagccattaaaaacaatgacctcatgaaattt
gcaggcaagtggacagaactagaaaatatcatcctgagtgaggtaactca
gccacaaaaaaacatacatgatatgcactcactgagaagtggatattagc
caaaaagctcagaatacctacgataccactcacaaaccataagaagccaa
gaaggaagactaaagtgtggatgttttagtcatacttagaatggggaaca
aaataatcagtgtcttttcatttgcacgcgcaccactatctatggagatc
agaatagtgtcaaatagcctggagctggaactacagtgggttgtttatgt
tttacttacatttaattaagcataactctgctagaagtcactgtttattt
atctacaaatgaacaaaaatgtatttgttacattgtagaaaatggttcca
gagagacattgaaacacatattatttataactatttgaaattttagagaa
tactaaaagaaaatatacttatgtgtgggagcctgtttttgttttgcgta
tgtgtgtgtgttagtttgtttgtgtgtgtgtttaatgtttctgagtaaaa
tatcagtttgaaaccctggtaaaataataatatctaattcaagggtaatc
tatgactaattatctatataaggtgttatagacatttctataaatcttta
gaaatta

gaattcaatcactaccatcaaactaaaaggcaggcacatagctataaatt
cagcactatgaggatgtgagactgtgtaattccgaggacttgctgaatag
ttcaaatacacaaattggcaaaaaaaatccacattcaatgagaaatacca
tctcaaaagtgagagggaaacacattgagaagtcagacacaagacatgta
tgtgcatatataccctaatatgcacatgcaagaacacttcatccttctct
ctgtatgtccaaaaatgagattgattatgggtattttgggttttcacttg
gctgatttcttttttgaatcattgctatgctgtttagagtctactgatat
ttggacttgacagtaattgaaactatttgaaattacataattttagttgt
ttgattagcatagaaaaggcaaattccatcttcaaatgttaaagagttta
ataatttatttgaaactaattctatatgggcaaaacagttaaggatttga
accagaagaaaaacttgttaacatttaatttgagacaaagcatctataga
tgataaaattgtctaataattatcatgaagtaatggaataaataacacta
atttttaaatatttctaatccttaaaaaagttgaaacactcagaagggag
agagagaaaagggaggtcaagagagcaagaccctcagaactaactaagca
aggcacatatgaactcataaagacagagacaaatcaatttgtatatttct
taatcgatgtttataaaaatatttaagtttcagaaacactgctttcttaa
atggagaatcaactgatcaagtttggaaaatattatgccttactaattga
taatactttaacatttgttatgcagtattttattgtctactttaacagag
tttttttctataaatattataaagaagttagtacaaagcttctgttccag
atattatttccagatatttatgtacatatctagtataaatcatcagatat
ttagctatttacatatctctgtgttataatgtaattaccaaaatttaaat
tatactatagcatagagcataacataacaatcgagaatagactgtgactg
atctaaattgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16581871_16582727
seq2: B6Ng01-237F18.b_245_1104

seq1  ACTCCTGGACATTGACCTAAAAGATGCTCCAATATATTAACAAGGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGACATTGACCTAAAAGATGCTCCAATATATTAACAAGGACACA  50

seq1  TGCTCCACCATGTTCTTAGAAACCTTAATTATAGTAGCCAGAAGATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACCATGTTCTTAGAAACCTTAATTATAGTAGCCAGAAGATGGAA  100

seq1  GCAACCCAGATATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCAGATATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  150

seq1  TTTACACAATGGAGTACTACCCAGCCATTAAAAACAATGACCTCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATGGAGTACTACCCAGCCATTAAAAACAATGACCTCATGAAA  200

seq1  TTTGCAGGCAAGTGGACAGAACTAGAAAATATCATCCTGAGTGAGGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCAAGTGGACAGAACTAGAAAATATCATCCTGAGTGAGGTAAC  250

seq1  TCAGCCACAAAAAAACATACATGATATGCACTCACTGAGAAGTGGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACAAAAAAACATACATGATATGCACTCACTGAGAAGTGGATATT  300

seq1  AGCCAAAAAGCTCAGAATACCTACGATACCACTCACAAACCATAAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAGCTCAGAATACCTACGATACCACTCACAAACCATAAGAAGC  350

seq1  CAAGAAGGAAGACTAAAGTGTGGATGTTTTAGTCATACTTAGAATGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAAGACTAAAGTGTGGATGTTTTAGTCATACTTAGAATGGGGA  400

seq1  ACAAAATAATCAGTGTCTTTTCATTTGCACGCGCACCACTATCTATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAATCAGTGTCTTTTCATTTGCACGCGCACCACTATCTATGGAG  450

seq1  ATCAGAATAGTGTCAAATAGCCTGGAGCTGGAACTACAGTGGGTTGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATAGTGTCAAATAGCCTGGAGCTGGAACTACAGTGGGTTGTTTA  500

seq1  TGTTTTACTTACATTTAATTAAGCATAACTCTGCTAGAAGTCACTGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTTACATTTAATTAAGCATAACTCTGCTAGAAGTCACTGTTTA  550

seq1  TTTATCTACAAATGAACAAAAATGTATTTGTTACATTGTAGAAAATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTACAAATGAACAAAAATGTATTTGTTACATTGTAGAAAATGGTT  600

seq1  CCAGAGAGACATTGAAACACATATTATTTATAACTATTTGAAATTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGACATTGAAACACATATTATTTATAACTATTTGAAATTTTAGA  650

seq1  GAATACTAAAAGAAAATATACTTATGTGTGGGAGCCTGTTTTTGTTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTAAAAGAAAATATACTTATGTGTGGGAGCCTGTTTTTGTTTTGC  700

seq1  GTATGTGTGTGTGTTAGTTTGTTTGTGTGTGTGTTT-ATGTTTCTGAGT-  748
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GTATGTGTGTGTGTTAGTTTGTTTGTGTGTGTGTTTAATGTTTCTGAGTA  750

seq1  ATATATCAGTTTGAAAACCCTGGTAAAATAATAATATCT-ATTCAAAGGT  797
      | ||||||||||| ||||||||||||||||||||||||| |||||| |||
seq2  AAATATCAGTTTG-AAACCCTGGTAAAATAATAATATCTAATTCAAGGGT  799

seq1  AATCTATGACTAA-TATCTATAT-AGGTGTTAATAAAACATTCTATAAAT  845
      ||||||||||||| ||||||||| ||||||| ||| |   ||||||||||
seq2  AATCTATGACTAATTATCTATATAAGGTGTT-ATAGACATTTCTATAAAT  848

seq1  CTTTAGATATTA  857
      ||||||| ||||
seq2  CTTTAGAAATTA  860


seq1: chr15_16762333_16763468
seq2: B6Ng01-237F18.g_67_1179 (reverse)

seq1  TGTCAATTTTAGACTCAGTCACAGGTTCTAATCTCCGAATTGTTAATGTT  50
      |||||| |||||| ||||||||||  |||| ||||   |||||| |||||
seq2  TGTCAA-TTTAGA-TCAGTCACAG--TCTATTCTC--GATTGTT-ATGTT  43

seq1  AATTGCCTCTATGCCTTATAGTATAAATTTAAATTTTTGGTAAATACATT  100
      |  || ||||||||  |||||||| |||||||| ||||||||| |||| |
seq2  A--TG-CTCTATGC--TATAGTAT-AATTTAAA-TTTTGGTAATTACA-T  85

seq1  TATAAACACAAGAGATTATGTAAATAGCTAAATATCTGATGATTTATACT  150
      ||| ||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TAT-AACAC-AGAGA-TATGTAAATAGCTAAATATCTGATGATTTATACT  132

seq1  AAGATATGTACAATAAATATCTGGAAATAAATATCTGGAACAGAAGCTTT  200
       |||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  -AGATATGTAC-ATAAATATCTGGAAAT-AATATCTGGAACAGAAGCTTT  179

seq1  GTACTAACTTCTTTATAAATATTTATAGAAAAAAACTCTGTTAAAGTAGA  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTACTAACTTCTTTAT-AATATTTATAGAAAAAAACTCTGTTAAAGTAGA  228

seq1  CAATAAAATACTGCATAACAAAATGTTAAAGTATTATCAATTAGTAAGGC  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATAAAATACTGCATAAC-AAATGTTAAAGTATTATCAATTAGTAAGGC  277

seq1  ATAATATTTTCCAAACTTGATCAGTTGATTCTCCATTTAAGAAAGCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTTCCAAACTTGATCAGTTGATTCTCCATTTAAGAAAGCAGTG  327

seq1  TTTCTGAAACTTAAATATTTTTATAAACATCGATTAAGAAATATACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAACTTAAATATTTTTATAAACATCGATTAAGAAATATACAAAT  377

seq1  TGATTTGTCTCTGTCTTTATGAGTTCATATGTGCCTTGCTTAGTTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTCTCTGTCTTTATGAGTTCATATGTGCCTTGCTTAGTTAGTTC  427

seq1  TGAGGGTCTTGCTCTCTTGACCTCCCTTTTCTCTCTCTCCCTTCTGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTTGCTCTCTTGACCTCCCTTTTCTCTCTCTCCCTTCTGAGTG  477

seq1  TTTCAACTTTTTTAAGGATTAGAAATATTTAAAAATTAGTGTTATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTTTTTAAGGATTAGAAATATTTAAAAATTAGTGTTATTTATT  527

seq1  CCATTACTTCATGATAATTATTAGACAATTTTATCATCTATAGATGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTTCATGATAATTATTAGACAATTTTATCATCTATAGATGCTTT  577

seq1  GTCTCAAATTAAATGTTAACAAGTTTTTCTTCTGGTTCAAATCCTTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAATTAAATGTTAACAAGTTTTTCTTCTGGTTCAAATCCTTAACT  627

seq1  GTTTTGCCCATATAGAATTAGTTTCAAATAAATTATTAAACTCTTTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCCATATAGAATTAGTTTCAAATAAATTATTAAACTCTTTAACA  677

seq1  TTTGAAGATGGAATTTGCCTTTTCTATGCTAATCAAACAACTAAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATGGAATTTGCCTTTTCTATGCTAATCAAACAACTAAAATTAT  727

seq1  GTAATTTCAAATAGTTTCAATTACTGTCAAGTCCAAATATCAGTAGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCAAATAGTTTCAATTACTGTCAAGTCCAAATATCAGTAGACTC  777

seq1  TAAACAGCATAGCAATGATTCAAAAAAGAAATCAGCCAAGTGAAAACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCATAGCAATGATTCAAAAAAGAAATCAGCCAAGTGAAAACCCA  827

seq1  AAATACCCATAATCAATCTCATTTTTGGACATACAGAGAGAAGGATGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCCATAATCAATCTCATTTTTGGACATACAGAGAGAAGGATGAAG  877

seq1  TGTTCTTGCATGTGCATATTAGGGTATATATGCACATACATGTCTTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGCATGTGCATATTAGGGTATATATGCACATACATGTCTTGTGT  927

seq1  CTGACTTCTCAATGTGTTTCCCTCTCACTTTTGAGATGGTATTTCTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTCAATGTGTTTCCCTCTCACTTTTGAGATGGTATTTCTCATT  977

seq1  GAATGTGGATTTTTTTTGCCAATTTGTGTATTTGAACTATTCAGCAAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGATTTTTTTTGCCAATTTGTGTATTTGAACTATTCAGCAAGTC  1027

seq1  CTCGGAATTACACAGTCTCACATCCTCATAGTGCTGAATTTATAGCTATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAATTACACAGTCTCACATCCTCATAGTGCTGAATTTATAGCTATG  1077

seq1  TGCCTGCCTTTTAGTTTGATGGTAGTGATTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTTTTAGTTTGATGGTAGTGATTGAATTC  1113


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