BAC Information

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BAC

Clone NameB6Ng01-238M23
Chromosome15 (Build37)
Map Location 18,748,850 - 18,876,349
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238M23.bB6Ng01-238M23.g
ACCGA049408GA049409
length1,1711,091
definitionB6Ng01-238M23.b B6Ng01-238M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,748,850 - 18,750,019)(18,875,257 - 18,876,349)
sequence
gaattcacctcttgtcttttaactgctgtaaggtcttgccatttcttccc
ttgctgggggtggacatatggggtaggtatgttcttgcctctttttttat
tttttatttttatttttttaagttatatgcgcaattattctaaaaatcct
tacctttcagtaaacaaatgagcatgcaactctttctgatgagtttccag
gaacaactgctttccatgtaggtaatgggaagccggataaataatctatt
atgttcaacagtgtggggtcttgctagtggagttttcgaattcattcatt
ctgaacaattgctgaaaatgtttacggagtgtcattagtcttgctcgttc
ctgtttacctctgtctcggatagcagcttagcaggtagcactgtttgctg
tgaactctagcttcagctaacattactttgcattccatatgaacgggttc
actcctcacttatccctggtcatagttcgttatgcattcagtatagagag
aaatgacagccagaggacagatgccttgaagctgtgagtggtcacatcta
caggaagacagtcgattgacattcatcagaaacaggatggatataattcc
tatgctcaccttttgtatgagtaggaagtatcagggggtaaaatttaaaa
ggggggggggattaaatgcatgcagtcagcagttgcagcatttattgtct
ctgctgcaataaaatccatattttatgtggtgttaaattaatgcagcatg
ttggcatgtctaaatggatgtcctcaacaagtaactattatagcactgta
agtatgggccaaagcagtagtcggctaattgtttccatgccaccacaata
aaaaccaagtacctctttcccatgtacaggggagaggctataggtataat
caaagacaacatttaaaactgacctatcattctcttgctttcaaaagaaa
aggaaaaaaaaaagggaaagccgattctatttccctacaatgtggtcttc
attccagtaaaggctcctataatccaagcggcccaatgcatgcttacctc
ttggagaatgcttccgttaaaaaaataatctaattttttttctctgtgag
aatcctatttcaaatcaaactggtcctgctgaatgctgacaacagtgtat
aacttcaatgcaatgttagga
gaattctttccttgacttcctgtgttagtgtgatgcctttgtccaccaca
tgaagatgtttctctgtccttccttgcctgactaaggcacttctaattgg
agaaaataaagcttatgaccgatagcaaaaggcaaaatagtaacatggga
tgtccatacagagagaggacctctgggaaagcagcagatgtgagacagtt
tggcaccgagtagcagaggaagttggatttatgatgatactgaggagatg
taaccagccatatagcagaacttagtaaaagaagggatgtttgagttaca
agttaggtaccaacaagcatggcttaagctcctggcatcaactcatgaat
aagcctgtgtcattattcaggaactggggcagacatagaaaaggcccaaa
ctcttaaaccctcagcaatggtgatgatggaatatgaaacggaagtggaa
aatgaaataactccattcctctctgagctgttttcttctggtatttaata
atagcaacagagactcagactggcatagtcttaaaagtgagaatctttat
tttaggagtcagcatttctaaagaaataatgatttaagtcgtgtttattt
gtttgtttggggacaagaaaaaaacacgggtacagctgaggaattgaaat
atctcataaggcttgagattctggtgggttatgcttctttagggatgctg
aacaccagtcttactgcttctgtagcaacactgctgctgtcaattttgca
gcacttactggtttgtaaattcaaaacatgatacaacaaaatagagcgag
gaatgaattttgaaagtcctccaagggctgtctgcctgaactggaggaat
tataagtttttcatcttgggtgttccatagctgttgaaaactttagtcta
aaagcacagagctggtcgcagcatatactcattgccaggagagagaggtg
tactctgttttccagggtgacttgtgaagcatacaagccactgctactgg
agattgcttccaacgattggaagtacagtgaggggtgaacatgggatagt
tgatgagcgaatgatactaaagaattcggtgttcaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18748850_18750019
seq2: B6Ng01-238M23.b_44_1214

seq1  GAATTCACCTCTTGTCTTTTAACTGCTGTAAGGTCTTGCCATTTCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTTGTCTTTTAACTGCTGTAAGGTCTTGCCATTTCTTCCC  50

seq1  TTGCTGGGGGTGGACATATGGGGTAGGTATGTTCTTGCCTCTTTTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGGGTGGACATATGGGGTAGGTATGTTCTTGCCTCTTTTTTTAT  100

seq1  TTTTTATTTTTATTTTTTTAAGTTATATGCGCAATTATTCTAAAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTATTTTTTTAAGTTATATGCGCAATTATTCTAAAAATCCT  150

seq1  TACCTTTCAGTAAACAAATGAGCATGCAACTCTTTCTGATGAGTTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCAGTAAACAAATGAGCATGCAACTCTTTCTGATGAGTTTCCAG  200

seq1  GAACAACTGCTTTCCATGTAGGTAATGGGAAGCCGGATAAATAATCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTGCTTTCCATGTAGGTAATGGGAAGCCGGATAAATAATCTATT  250

seq1  ATGTTCAACAGTGTGGGGTCTTGCTAGTGGAGTTTTCGAATTCATTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAACAGTGTGGGGTCTTGCTAGTGGAGTTTTCGAATTCATTCATT  300

seq1  CTGAACAATTGCTGAAAATGTTTACGGAGTGTCATTAGTCTTGCTCGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAATTGCTGAAAATGTTTACGGAGTGTCATTAGTCTTGCTCGTTC  350

seq1  CTGTTTACCTCTGTCTCGGATAGCAGCTTAGCAGGTAGCACTGTTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACCTCTGTCTCGGATAGCAGCTTAGCAGGTAGCACTGTTTGCTG  400

seq1  TGAACTCTAGCTTCAGCTAACATTACTTTGCATTCCATATGAACGGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTAGCTTCAGCTAACATTACTTTGCATTCCATATGAACGGGTTC  450

seq1  ACTCCTCACTTATCCCTGGTCATAGTTCGTTATGCATTCAGTATAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCACTTATCCCTGGTCATAGTTCGTTATGCATTCAGTATAGAGAG  500

seq1  AAATGACAGCCAGAGGACAGATGCCTTGAAGCTGTGAGTGGTCACATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGCCAGAGGACAGATGCCTTGAAGCTGTGAGTGGTCACATCTA  550

seq1  CAGGAAGACAGTCGATTGACATTCATCAGAAACAGGATGGATATAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACAGTCGATTGACATTCATCAGAAACAGGATGGATATAATTCC  600

seq1  TATGCTCACCTTTTGTATGAGTAGGAAGTATCAGGGGGTAAAATTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCACCTTTTGTATGAGTAGGAAGTATCAGGGGGTAAAATTTAAAA  650

seq1  GGGGGGGGGGATTAAATGCATGCAGTCAGCAGTTGCAGCATTTATTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGATTAAATGCATGCAGTCAGCAGTTGCAGCATTTATTGTCT  700

seq1  CTGCTGCAATAAAATCCATATTTTATGTGGTGTTAAATTAATGCAGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAATAAAATCCATATTTTATGTGGTGTTAAATTAATGCAGCATG  750

seq1  TTGGCATGTCTAAATGGATGTCCTCAACAAGTAACTATTATAGCACTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGTCTAAATGGATGTCCTCAACAAGTAACTATTATAGCACTGTA  800

seq1  AGTATGGGCCAAAGCAGTAGTCGGC-AAATGTTTCCATGCCACCACAATA  849
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  AGTATGGGCCAAAGCAGTAGTCGGCTAATTGTTTCCATGCCACCACAATA  850

seq1  AAAACCAAGTACCTCTTTCCCATGTACAGGGGAGAGGCTATAGGTATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGTACCTCTTTCCCATGTACAGGGGAGAGGCTATAGGTATAAT  900

seq1  CAAAGACAAACATTTAAAACTGACCTATCA-TCTCTTGCTTTCAAAAAGA  948
      ||||||| |||||||||||||||||||||| ||||||||||||||||   
seq2  CAAAGAC-AACATTTAAAACTGACCTATCATTCTCTTGCTTTCAAAA--G  947

seq1  AAAAAGAAAAAAAAAAAGGAAAGCCGA-TCTATTT-CCTACAATTGTGGT  996
      |||| ||||||||||| |||||||||| ||||||| ||||||| ||||||
seq2  AAAAGGAAAAAAAAAAGGGAAAGCCGATTCTATTTCCCTACAA-TGTGGT  996

seq1  CCTTCATTCCAGTAAAAGCTCCTATTATCCAAAGCGGCAC-ATGCATTGC  1045
       ||||||||||||||| |||||||| |||| ||||||| | ||||||   
seq2  -CTTCATTCCAGTAAAGGCTCCTATAATCC-AAGCGGCCCAATGCATGCT  1044

seq1  TACTCTTTGGAG-ATGCTTCCTTTAAAAAAATATATCTAATTTTTTTTTC  1094
      |||   |||||| |||||||| ||||||||||| |||||| |||||||||
seq2  TACCTCTTGGAGAATGCTTCCGTTAAAAAAATA-ATCTAA-TTTTTTTTC  1092

seq1  TCTTGTAAG-ATCTATTTTAAAAATAATCTGTCCCTG-TG-ATGCTGACA  1141
      || ||| || |||   ||| |||  || |||  |||| || |||||||||
seq2  TC-TGTGAGAATCCTATTTCAAATCAAACTGGTCCTGCTGAATGCTGACA  1141

seq1  ACTGT-TAT-ACTTCAATGCATATGTTAGGA  1170
      || || ||| ||||||||||| |||||||||
seq2  ACAGTGTATAACTTCAATGCA-ATGTTAGGA  1171

seq1: chr15_18875257_18876349
seq2: B6Ng01-238M23.g_64_1154 (reverse)

seq1  CCCA-CTGAACACACGAATTCTTTAGTATCA-TCGCTCATCAACTATCCC  48
      |||| |||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CCCACCTGAACAC-CGAATTCTTTAGTATCATTCGCTCATCAACTATCCC  49

seq1  ATGTCCACCCCCTCACTGTAC-TCCAATCGTTGGAAGCATTCTCCAGTAG  97
      |||| || ||||||||||||| ||||||||||||||||| ||||||||| 
seq2  ATGTTCA-CCCCTCACTGTACTTCCAATCGTTGGAAGCAATCTCCAGTA-  97

seq1  GCAGGTGGC-TGTATGCTTCCACAAGTCAACCTGGAAAACAGAGTACACC  146
      ||| ||||| ||||||||| ||||||||| ||||||||||||||||||||
seq2  GCA-GTGGCTTGTATGCTT-CACAAGTCACCCTGGAAAACAGAGTACACC  145

seq1  TCTCTCTCCTTGGCAATGAGTATATGCTGCGACCAGCTCTGTGCTTTTAG  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCC-TGGCAATGAGTATATGCTGCGACCAGCTCTGTGCTTTTAG  194

seq1  ACTAAAGTTTTCAACAGCTATGGAACACCCAAGATGAAAAACTTATAATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTTTTCAACAGCTATGGAACACCCAAGATGAAAAACTTATAATT  244

seq1  CCTCCAGTTCAGGCAGACAGCCCTTGGAGGACTTTCAAAATTCATTCCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTTCAGGCAGACAGCCCTTGGAGGACTTTCAAAATTCATTCCTC  294

seq1  GCTCTATTTTGTTGTATCATGTTTTGAATTTACAAACCAGTAAGTGCTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTTGTTGTATCATGTTTTGAATTTACAAACCAGTAAGTGCTGC  344

seq1  AAAATTGACAGCAGCAGTGTTGCTACAGAAGCAGTAAGACTGGTGTTCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACAGCAGCAGTGTTGCTACAGAAGCAGTAAGACTGGTGTTCAG  394

seq1  CATCCCTAAAGAAGCATAACCCACCAGAATCTCAAGCCTTATGAGATATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAAAGAAGCATAACCCACCAGAATCTCAAGCCTTATGAGATATT  444

seq1  TCAATTCCTCAGCTGTACCCGTGTTTTTTTCTTGTCCCCAAACAAACAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTCAGCTGTACCCGTGTTTTTTTCTTGTCCCCAAACAAACAAA  494

seq1  TAAACACGACTTAAATCATTATTTCTTTAGAAATGCTGACTCCTAAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACGACTTAAATCATTATTTCTTTAGAAATGCTGACTCCTAAAATA  544

seq1  AAGATTCTCACTTTTAAGACTATGCCAGTCTGAGTCTCTGTTGCTATTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTCACTTTTAAGACTATGCCAGTCTGAGTCTCTGTTGCTATTAT  594

seq1  TAAATACCAGAAGAAAACAGCTCAGAGAGGAATGGAGTTATTTCATTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAGAAGAAAACAGCTCAGAGAGGAATGGAGTTATTTCATTTTC  644

seq1  CACTTCCGTTTCATATTCCATCATCACCATTGCTGAGGGTTTAAGAGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCGTTTCATATTCCATCATCACCATTGCTGAGGGTTTAAGAGTTT  694

seq1  GGGCCTTTTCTATGTCTGCCCCAGTTCCTGAATAATGACACAGGCTTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTTCTATGTCTGCCCCAGTTCCTGAATAATGACACAGGCTTATT  744

seq1  CATGAGTTGATGCCAGGAGCTTAAGCCATGCTTGTTGGTACCTAACTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTGATGCCAGGAGCTTAAGCCATGCTTGTTGGTACCTAACTTGT  794

seq1  AACTCAAACATCCCTTCTTTTACTAAGTTCTGCTATATGGCTGGTTACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACATCCCTTCTTTTACTAAGTTCTGCTATATGGCTGGTTACAT  844

seq1  CTCCTCAGTATCATCATAAATCCAACTTCCTCTGCTACTCGGTGCCAAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTATCATCATAAATCCAACTTCCTCTGCTACTCGGTGCCAAAC  894

seq1  TGTCTCACATCTGCTGCTTTCCCAGAGGTCCTCTCTCTGTATGGACATCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACATCTGCTGCTTTCCCAGAGGTCCTCTCTCTGTATGGACATCC  944

seq1  CATGTTACTATTTTGCCTTTTGCTATCGGTCATAAGCTTTATTTTCTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACTATTTTGCCTTTTGCTATCGGTCATAAGCTTTATTTTCTCCA  994

seq1  ATTAGAAGTGCCTTAGTCAGGCAAGGAAGGACAGAGAAACATCTTCATGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGTGCCTTAGTCAGGCAAGGAAGGACAGAGAAACATCTTCATGT  1044

seq1  GGTGGACAAAGGCATCACACTAACACAGGAAGTCAAGGAAAGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACAAAGGCATCACACTAACACAGGAAGTCAAGGAAAGAATTC  1091