BAC Information

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BAC

Clone NameB6Ng01-239K05
Chromosome15 (Build37)
Map Location 21,522,072 - 21,523,146
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302, Cdh12
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239K05.bB6Ng01-239K05.g
ACCGA050009GA050010
length1,0781,150
definitionB6Ng01-239K05.b B6Ng01-239K05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagaggttgaggcagaatgcacaagtacctaaataggtctgca
ccaaaccctctaagtatgtattatgcctttcagttttgtgtttttacaaa
ttttttagaagatcagcaggtttctgatgtgtgtcccttctcttggtctt
tttgttgttgttgttgttgttctctttttgtcttgtccaactctgatgtg
ttagtttttgttttattatattttatcttgttttattattataccttaaa
agcctgtttgatttcccacaagagactgaaatgaagtgaatctggatggg
aagggatatatagaggaacttgaagcacagatggaggagaaatcttaacc
aggatctattacatgaaaagggatattttaaataaaagtaaaaaataaaa
agcaaaaacaaacaaaatgttctcaatactattgacagagatggaaaaaa
taagatgagagcaattaacaaatgttgatgacaacgaaatgaaaatggaa
ttgcgatctctaatgtgggatttatattggtgtgtgaagtatgaaagtct
cagagatgaaaaaaaaaaaaaaaaagcaagtgaagctggaagtcaaagca
gtacttgggagatgagaggggagactgctgaaattctatatgaatcacag
aaagatgaaagcaaggagctccaaggctttcaattatggagttactagtg
aacttcaagagaagtggacttcagtttgtatggcaggttactccgatcag
agtctgcaatgtgcacttcccagctctgcgaagatcctggcttggccgct
tgctaattacatcacattttctgtgctgcctaatgagaccaaactgtatt
taatcttacactaaatagatccagcaacatttgtcttatctaaatactgt
agtcattttacattaagaataatttaagcattgtactcaacaactagaaa
gcattgctttgataggagacagcagaaactgaaagaaaagtcatcacctt
acatcatttgtaaccacattctcaaagaattcagcaactcttcatgggtt
tctttagtgatgaataatcaggggagaa

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatcttcacctata
ggtggacacattatgactaaccagtaccctgagctctgactctagctgca
tatgtatcaaagatgctagtcgtcaatcactgaaggaagtcatgacacgc
gactgatgccaggtacagatgcagtcaaggggagggagatgtgttgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21522072_21523146
seq2: B6Ng01-239K05.b_43_1120 (reverse)

seq1  TTCTCCCCTGATTA-TCATCACTAAAG-AACCCATGAGGAGTTGCTGAA-  47
      |||||||||||||| |||||||||||| ||||||||| ||||||||||| 
seq2  TTCTCCCCTGATTATTCATCACTAAAGAAACCCATGAAGAGTTGCTGAAT  50

seq1  TCCTTGAGAATGTGGTTACAAAATGATGTAAGGTGATGACTTTTC-TTCA  96
      || |||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TCTTTGAGAATGTGGTTAC-AAATGATGTAAGGTGATGACTTTTCTTTCA  99

seq1  GTTTCTGCTGTCTCCTATCAAAGCAATGCTTTCTAGTTGTTGAGTACAAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTGTCTCCTATCAAAGCAATGCTTTCTAGTTGTTGAGTACAAT  149

seq1  GCTTAAATTATTCTTAATGTAAAATGACTACAGTATTTAGATAAGACAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATTATTCTTAATGTAAAATGACTACAGTATTTAGATAAGACAAA  199

seq1  TGTTGCTGGATCTATTTAGTGTAAGATTAAATACAGTTTGGTCTCATTAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGGATCTATTTAGTGTAAGATTAAATACAGTTTGGTCTCATTAG  249

seq1  GCAGCACAGAAAATGTGATGTAATTAGCAAGCGGCCAAGCCAGGATCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAGAAAATGTGATGTAATTAGCAAGCGGCCAAGCCAGGATCTTC  299

seq1  GCAGAGCTGGGAAGTGCACATTGCAGACTCTGATCGGAGTAACCTGCCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGGGAAGTGCACATTGCAGACTCTGATCGGAGTAACCTGCCAT  349

seq1  ACAAACTGAAGTCCACTTCTCTTGAAGTTCACTAGTAACTCCATAATTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAAGTCCACTTCTCTTGAAGTTCACTAGTAACTCCATAATTGA  399

seq1  AAGCCTTGGAGCTCCTTGCTTTCATCTTTCTGTGATTCATATAGAATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGGAGCTCCTTGCTTTCATCTTTCTGTGATTCATATAGAATTTC  449

seq1  AGCAGTCTCCCCTCTCATCTCCCAAGTACTGCTTTGACTTCCAGCTTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCCCCTCTCATCTCCCAAGTACTGCTTTGACTTCCAGCTTCAC  499

seq1  TTGCTTTTTTTTTTTTTTTTTCATCTCTGAGACTTTCATACTTCACACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTTTTTTTTTTTTTCATCTCTGAGACTTTCATACTTCACACAC  549

seq1  CAATATAAATCCCACATTAGAGATCGCAATTCCATTTTCATTTCGTTGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAATCCCACATTAGAGATCGCAATTCCATTTTCATTTCGTTGTC  599

seq1  ATCAACATTTGTTAATTGCTCTCATCTTATTTTTTCCATCTCTGTCAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATTTGTTAATTGCTCTCATCTTATTTTTTCCATCTCTGTCAATA  649

seq1  GTATTGAGAACATTTTGTTTGTTTTTGCTTTTTATTTTTTACTTTTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGAACATTTTGTTTGTTTTTGCTTTTTATTTTTTACTTTTATTT  699

seq1  AAAATATCCCTTTTCATGTAATAGATCCTGGTTAAGATTTCTCCTCCATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCTTTTCATGTAATAGATCCTGGTTAAGATTTCTCCTCCATC  749

seq1  TGTGCTTCAAGTTCCTCTATATATCCCTTCCCATCCAGATTCACTTCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCAAGTTCCTCTATATATCCCTTCCCATCCAGATTCACTTCATT  799

seq1  TCAGTCTCTTGTGGGAAATCAAACAGGCTTTTAAGGTATAATAATAAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTTGTGGGAAATCAAACAGGCTTTTAAGGTATAATAATAAAAC  849

seq1  AAGATAAAATATAATAAAACAAAAACTAACACATCAGAGTTGGACAAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAATATAATAAAACAAAAACTAACACATCAGAGTTGGACAAGAC  899

seq1  AAAAAGAGAACAACAACAACAACAACAAAAAGACCAAGAGAAGGGACACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAACAACAACAACAACAACAAAAAGACCAAGAGAAGGGACACA  949

seq1  CATCAGAAACCTGCTGATCTTCTAAAAAATTTGTAAAAACACAAAACTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAACCTGCTGATCTTCTAAAAAATTTGTAAAAACACAAAACTGA  999

seq1  AAGGCATAATACATACTTAGAGGGTTTGGTGCAGACCTATTTAGGTACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAATACATACTTAGAGGGTTTGGTGCAGACCTATTTAGGTACTT  1049

seq1  GTGCATTCTGCCTCAACCTCTATGAATTC  1075
      |||||||||||||||||||||||||||||
seq2  GTGCATTCTGCCTCAACCTCTATGAATTC  1078


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