BAC Information

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BAC

Clone NameB6Ng01-239M24
Chromosome15 (Build37)
Map Location 29,412,420 - 29,413,614
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M24.bB6Ng01-239M24.g
ACCGA050139GA050140
length1,202911
definitionB6Ng01-239M24.b B6Ng01-239M24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaccaaacactacaaactcagttggttaaaaacaacacaggt
ttgttttcacaagtgtcctttgaaagttgctactggagttgatgtctgta
gggttttctcattctagtttgtagatggaatctttctgctgcattctcat
aggatagaagaggaaaaggctcactgagggcaacattaatcacactcagt
gtgtccctatattgtgaattgttcctgactttatcatattggaggctagg
atatcagcagaatttggaaaaggattgtcagctacagatatgaggccctc
attttctcccttcctgtagttcagaggctggccttgactttctgcagtgt
gattttatttgtatctaacagagaacatggatatttacttcttaaaacta
ccgaaggataaacagaatactgtagcaacctagattatgattccacacaa
tgctttaaggttaatgaaattaatcatagtatcaccatcatatcgtttct
tttttcttcatctctagtaaaaccttccaggggcttttagcagtgggcaa
gcatcgtgaagtgaaactatatgaaactataactctgcaatcctcacagg
ttatgtgtgtcaggaagcacactttgagctgtattcccatggagctctgt
aacttatcaataacaatcaagatcaactctcacatccctgattcaggttt
ccaggagcattttcttcactttcctctaagcagagcttcagtccacaata
tcacctttgtactaaagcaaacaatccacaatctgaaacccaaatgcaga
aagcatctatctggcttgcagtggtttagccgttagtcgttctcagtaga
aatagaaaggccagacagaacagcttaggtcacagcaccctgcaaacata
aataggcaattacaaaaataaggaggaaacggctgaggcaaaaatacagg
ccaaaggccaaagtcacatgagctgcatgcatcagcagggcacaacccta
gaaaaccttatcctaaaacttcccaaattagcatcaccttcttaaaaaca
aaacaattcaacaaaagagcattgtgagtacttcacgtccaagatcataa
caagtcatgtaaagcatccccagcatcttaatagaatattacagtgatcc
atgaacacaagcattttcaaccgatcttggccatttttcacactcaattg
cc

gaattctcttttattatttatttatttatttattcgtttatttatttata
ttaatgttagatcctgaccacaggccccctccctctccttccattccctc
ccttacaaacgtctcccctattttccctttcatttcttctcagagagtac
cactggactccgggatatctagttccagcagggctaagcacatcctctcc
taatgaggcccaatcaggcagtccctgtaactggaagggattcagtgtca
gggaacaaagactgaaacagctccagcttcactggttagaggaaggccaa
gctgcatatttgctaaaatggtctaggtccacttcctgcatgctccctga
ttgctggcctagggtctaagtccctaccatggtcccaggttagttgattc
tataggtattcttgtggtgtccttgatgcctccaacttgctcacttctat
ctcttactcttccccaagactccctgagttctgcctgatatttttggctc
tgtgagtttctgcatatgtctccattgtctggtagatgaagcctctcagg
agaaagttatgctaggttcctggctacaagcatagctgagtgtcaagggt
tggctcactcacctaggactggtctcaagcaggagcaatcattgggtgac
tgatcgctgctgggagcctgcctgggcacttgttctctctagaaggcagt
aggggtggtaaagcatcacaggaggtaaaacttggttttgcaaaagtaaa
agttgcttaatattaataatatttactctccttgattatttgttattctg
gagtcaggaatagcttcagatgaattaacacctgttgttgataaacaaac
aaacaagaaacaaacatatgtacatttagatgaatggatggatggatgga
atgggatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29412420_29413614
seq2: B6Ng01-239M24.b_48_1249

seq1  GAATTCATAACCAAACACTACAAACTCAGTTGGTTAAAAACAACACAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCAAACACTACAAACTCAGTTGGTTAAAAACAACACAGGT  50

seq1  TTGTTTTCACAAGTGTCCTTTGAAAGTTGCTACTGGAGTTGATGTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCACAAGTGTCCTTTGAAAGTTGCTACTGGAGTTGATGTCTGTA  100

seq1  GGGTTTTCTCATTCTAGTTTGTAGATGGAATCTTTCTGCTGCATTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCTCATTCTAGTTTGTAGATGGAATCTTTCTGCTGCATTCTCAT  150

seq1  AGGATAGAAGAGGAAAAGGCTCACTGAGGGCAACATTAATCACACTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAAGAGGAAAAGGCTCACTGAGGGCAACATTAATCACACTCAGT  200

seq1  GTGTCCCTATATTGTGAATTGTTCCTGACTTTATCATATTGGAGGCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTATATTGTGAATTGTTCCTGACTTTATCATATTGGAGGCTAGG  250

seq1  ATATCAGCAGAATTTGGAAAAGGATTGTCAGCTACAGATATGAGGCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCAGAATTTGGAAAAGGATTGTCAGCTACAGATATGAGGCCCTC  300

seq1  ATTTTCTCCCTTCCTGTAGTTCAGAGGCTGGCCTTGACTTTCTGCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCCTTCCTGTAGTTCAGAGGCTGGCCTTGACTTTCTGCAGTGT  350

seq1  GATTTTATTTGTATCTAACAGAGAACATGGATATTTACTTCTTAAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTGTATCTAACAGAGAACATGGATATTTACTTCTTAAAACTA  400

seq1  CCGAAGGATAAACAGAATACTGTAGCAACCTAGATTATGATTCCACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGATAAACAGAATACTGTAGCAACCTAGATTATGATTCCACACAA  450

seq1  TGCTTTAAGGTTAATGAAATTAATCATAGTATCACCATCATATCGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGGTTAATGAAATTAATCATAGTATCACCATCATATCGTTTCT  500

seq1  TTTTTCTTCATCTCTAGTAAAACCTTCCAGGGGCTTTTAGCAGTGGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCATCTCTAGTAAAACCTTCCAGGGGCTTTTAGCAGTGGGCAA  550

seq1  GCATCGTGAAGTGAAACTATATGAAACTATAACTCTGCAATCCTCACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGTGAAGTGAAACTATATGAAACTATAACTCTGCAATCCTCACAGG  600

seq1  TTATGTGTGTCAGGAAGCACACTTTGAGCTGTATTCCCATGGAGCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTGTCAGGAAGCACACTTTGAGCTGTATTCCCATGGAGCTCTGT  650

seq1  AACTTATCAATAACAATCAAGATCAACTCTCACATCCCTGATTCAGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATCAATAACAATCAAGATCAACTCTCACATCCCTGATTCAGGTTT  700

seq1  CCAGGAGCATTTTCTTCACTTTCCTCTAAGCAGAGCTTCAGTCCACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCATTTTCTTCACTTTCCTCTAAGCAGAGCTTCAGTCCACAATA  750

seq1  TCACCTTTGTACTAAAGCAAACAATCCACAATCTGAAACCCAAATGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTGTACTAAAGCAAACAATCCACAATCTGAAACCCAAATGCAGA  800

seq1  AAGCATCTATCTGGCTTGCAGTGGTTTAGCCGTTAGTCGTTCTCAGTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTATCTGGCTTGCAGTGGTTTAGCCGTTAGTCGTTCTCAGTAGA  850

seq1  AATAG-AAGGCCAGACAGAACAGCTTAGGTCACAGCACCCTGCAAACATA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGGCCAGACAGAACAGCTTAGGTCACAGCACCCTGCAAACATA  900

seq1  AATAGGCAATTACAAAAATAAGGAGGAAACGGCTGAGGC-AAAATACAGG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAGGCAATTACAAAAATAAGGAGGAAACGGCTGAGGCAAAAATACAGG  950

seq1  CC-AAGGCCAAGGTCACATGAGCTGCATGCATCAGCAGGGCACAA-CCTA  996
      || |||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CCAAAGGCCAAAGTCACATGAGCTGCATGCATCAGCAGGGCACAACCCTA  1000

seq1  G-AAACCTTAT-CTAAAACTT-CCAAATTAGCATCACCTTCTT-AAAACA  1042
      | ||||||||| ||||||||| ||||||||||||||||||||| ||||||
seq2  GAAAACCTTATCCTAAAACTTCCCAAATTAGCATCACCTTCTTAAAAACA  1050

seq1  AAAC-ATTCAACAAAAGAGCATGTGGAGTACTTCACGTCC-AGGTCATAA  1090
      |||| |||||||||||||||||   ||||||||||||||| || ||||||
seq2  AAACAATTCAACAAAAGAGCATTGTGAGTACTTCACGTCCAAGATCATAA  1100

seq1  CAAGTCATGGTAAAGCATCCCCAGCATCTT-ATAGATATTTACCAGTGAT  1139
      |||||||| ||||||||||||||||||||| ||||| || |  |||||||
seq2  CAAGTCAT-GTAAAGCATCCCCAGCATCTTAATAGA-ATATTACAGTGAT  1148

seq1  CCCATGGAACACAAGGCATTTTCAACCCAATCTTTGCCATTTTT-TCACT  1188
       |||| |||||||| |||||||||| || ||||| |||||||||  ||||
seq2  -CCAT-GAACACAA-GCATTTTCAA-CCGATCTTGGCCATTTTTCACACT  1194

seq1  C-ATTGCC  1195
      | ||||||
seq2  CAATTGCC  1202


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