BAC Information

Click to search

BAC

Clone NameB6Ng01-240B09
Chromosome15 (Build37)
Map Location 47,103,566 - 47,104,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B09.bB6Ng01-240B09.g
ACCGA050344GA050345
length6261,167
definitionB6Ng01-240B09.b B6Ng01-240B09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaattttcttcaattctgacttgtttgtctttttaagatatgct
aattgcatgagcttcatttcttatttttaaagagactaatatatattatc
aaataatgaatttccaagagtaataacctaaacgtattttaaatgttttt
gaattagaatttctctgaggcagaatctaaagtgaactttgcatgcaggg
actagaaggctaacttctggtatgaggttacccttctgaatttgaaagtc
atgaggaaccaatgttagattacactagagcacaatttaatgaatttttt
cattaaagacatttaaaagactgccagactttccccaatatcatgtcata
tccatcttgcagttcaagctggcccacagatcctgtgcttgatcccatct
tgttgagtgcatacaggtttctgtgaaaacttcatctaaaatgtgccctg
aacaggatgttaccacagtggttgaagaaaaaatttgctttctgacattt
tgaaagagttcctaatgggtatatatttcaatttttggtacaggttggtt
gtgttaaaaatagatagatagatagatagatagatagatagatagataga
tagatagatagatagatgatagatag

gaattctcacctgaggaataccgaatggcagagaagcaactgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaagtttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagattatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagtcagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaaag
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctgtagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaact
taggatacccaagatataagataaaattttctaaacacatgaatctcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtgatga
aaggatcgaccatctagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatactctagcaagattttggtgaaa
ggacccagatgtagctgtctcttgtaagactatgctggggcctagcaaac
acagaagtggatgctcacagttagctagtgatggatcacaaagcttccaa
tggaggagctagagaaagtacccaagcgctaaagggatctgtaaccctat
agtggacacattatgaactacccatacccggagctcttgactctagctgc
atatgtatcaacgatgcctagtcgcatcactgaaaggagaagtctcaatg
acatgcaacttaatgccagttacaggacgtcagcaaaaattgggaattgg
ttgggcatagggacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47103566_47104191
seq2: B6Ng01-240B09.b_46_671 (reverse)

seq1  CTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50

seq1  TCTATCTATCTATCTATTTTTAACACAACCAACCTGTACCAAAAATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATTTTTAACACAACCAACCTGTACCAAAAATTGAA  100

seq1  ATATATACCCATTAGGAACTCTTTCAAAATGTCAGAAAGCAAATTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACCCATTAGGAACTCTTTCAAAATGTCAGAAAGCAAATTTTTTC  150

seq1  TTCAACCACTGTGGTAACATCCTGTTCAGGGCACATTTTAGATGAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCACTGTGGTAACATCCTGTTCAGGGCACATTTTAGATGAAGTTT  200

seq1  TCACAGAAACCTGTATGCACTCAACAAGATGGGATCAAGCACAGGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAACCTGTATGCACTCAACAAGATGGGATCAAGCACAGGATCTG  250

seq1  TGGGCCAGCTTGAACTGCAAGATGGATATGACATGATATTGGGGAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGCTTGAACTGCAAGATGGATATGACATGATATTGGGGAAAGTC  300

seq1  TGGCAGTCTTTTAAATGTCTTTAATGAAAAAATTCATTAAATTGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTTTTAAATGTCTTTAATGAAAAAATTCATTAAATTGTGCTCT  350

seq1  AGTGTAATCTAACATTGGTTCCTCATGACTTTCAAATTCAGAAGGGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATCTAACATTGGTTCCTCATGACTTTCAAATTCAGAAGGGTAAC  400

seq1  CTCATACCAGAAGTTAGCCTTCTAGTCCCTGCATGCAAAGTTCACTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCAGAAGTTAGCCTTCTAGTCCCTGCATGCAAAGTTCACTTTAG  450

seq1  ATTCTGCCTCAGAGAAATTCTAATTCAAAAACATTTAAAATACGTTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTCAGAGAAATTCTAATTCAAAAACATTTAAAATACGTTTAGG  500

seq1  TTATTACTCTTGGAAATTCATTATTTGATAATATATATTAGTCTCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTCTTGGAAATTCATTATTTGATAATATATATTAGTCTCTTTAA  550

seq1  AAATAAGAAATGAAGCTCATGCAATTAGCATATCTTAAAAAGACAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAATGAAGCTCATGCAATTAGCATATCTTAAAAAGACAAACAA  600

seq1  GTCAGAATTGAAGAAAATTTGAATTC  626
      ||||||||||||||||||||||||||
seq2  GTCAGAATTGAAGAAAATTTGAATTC  626


| Home | SequenceCutter | Blast | Download |