BAC Information

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BAC

Clone NameB6Ng01-240J03
Chromosome15 (Build37)
Map Location 10,453,981 - 10,626,300
singlet/doubletdoublet
Overlap gene4930401A09Rik, EG666579, Rai14
Upstream geneIl7r, C230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240J03.bB6Ng01-240J03.g
ACCGA050706GA050707
length4561,120
definitionB6Ng01-240J03.b B6Ng01-240J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,453,981 - 10,454,441)(10,625,173 - 10,626,300)
sequence
caggccacacatttgtgttacaaatggagatgctgcctcctacaaacgcc
ttgtgggtcccatcccccccccccccccccgggccagtaaagccacctgc
tgatggactggctcaccaaattcaagactggatcagaacatgcttacgca
gcagttgtcagccagtcctccctcttgtctctctttaaaccagccaggct
caagttaaggaatctaccaccggtatctattttgtttccccttctgagaa
aaatttaaccatcctcctttgggccctccttgttatttgggttctttagg
tctggtgattataagatggttatcctgtacttatcagtgagtatgtacca
agcatatcctttaaggtttggttatttcactcaggatagtattttctaat
tccacccgtttgtctgcggaggtggatggaaggaggaaactgggtgggag
gggatg
tctgttcctaagtcagtgggcagcctgagataggaattttcaaattttct
ggaaaaattaaacaagggctgctgaactctcttgtgccagaatctaaggc
gatctttcttggggtgaatcttggagacattctgcagtgattcctggtgg
gtacactcagcattatgagagactggacactgctttaggaggttgcacag
atgtctgactcaggtctggagggacaccatgtcatgtgtgttcacacacc
ctccccccgccatgaccacaacctaaattctatgctcatagccggttgga
atcctgtcccatttataatcgattctctgatcttattgttgtcctcaaaa
atttccggtgagtgtgccgtatttaatacctaattataagaatcttttcc
aaagctgttttctacatgcaaagttgtgaatctcttgtggtgcaaattct
ccttcctgcatgtccaaatgcccttcaaattcagtgttgaaggctagacc
agcctgctgtagaggaagtatttagtgggtccagatgcccggtttatttt
ctttgtttcagaagctggggtgttgtaactcctaggtgaagccccagact
aggaggccgagctagagcagctgctgcagggttggaaagatggtggtgtt
gggacagccatcttcctggaatagttgggctggagaggccttttcttctg
ccagattgaaaggaccacatgtttgcatagctcttggtaagaatctatct
ttgatgtggagagagattattgtctgaggaaacaagaagtattttggttc
cttctacttgatgcctttgtgggtgcggattttaagtctgatgtgttctt
tacagtgcagaagaagagcgtctcaaagctcctctgggtacacatgagtg
ctgtgctgttactgagggttctgtgcagtaattaatttccacatgccagt
atgcaggattagctagaggacttgctcccctaatctactgtagttcagag
gattgggtcatgtggtatggtctgcaagtgctatgtattctgtgattcaa
acacttaaataatgtgtacacagccatggtctgctttctggataatggac
ttactttactggccttgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10453981_10454441
seq2: B6Ng01-240J03.b_44_505

seq1  GAATTCCAGGCCACACATTTGTGTTACAAATGGAGATGCTGCCTCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCACACATTTGTGTTACAAATGGAGATGCTGCCTCCTACA  50

seq1  AACGCCTTGTGGGTCCCAT-CCCCCCCCCCCCCCCCGGGCCAGTAAAGCC  99
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACGCCTTGTGGGTCCCATCCCCCCCCCCCCCCCCCGGGCCAGTAAAGCC  100

seq1  ACCTGCTGATGGACTGGCTCACCAAATTCAAGACTGGATCAGAACATGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGATGGACTGGCTCACCAAATTCAAGACTGGATCAGAACATGCT  150

seq1  TACGCAGCAGTTGTCAGCCAGTCCTCCCTCTTGTCTCTCTTTAAACCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAGCAGTTGTCAGCCAGTCCTCCCTCTTGTCTCTCTTTAAACCAGC  200

seq1  CAGGCTCAAGTTAAGGAATCTACCACCGGTATCTATTTTGTTTCCCCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAAGTTAAGGAATCTACCACCGGTATCTATTTTGTTTCCCCTTC  250

seq1  TGAGAAAAATTTAACCATCCTCCTTTGGGCCCTCCTTGTTATTTGGGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATTTAACCATCCTCCTTTGGGCCCTCCTTGTTATTTGGGTTC  300

seq1  TTTAGGTCTGGTGATTATAAGATGGTTATCCTGTACTTATCAGTGAGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCTGGTGATTATAAGATGGTTATCCTGTACTTATCAGTGAGTAT  350

seq1  GTACCAAGCATATCCTTTAAGGTTTGGTTATTTCACTCAGGATAGTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGCATATCCTTTAAGGTTTGGTTATTTCACTCAGGATAGTATTT  400

seq1  TCTAATTCCACCCGTTTGTCTGCGGAGGTGGATGGAAGGAGGAAACTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCCACCCGTTTGTCTGCGGAGGTGGATGGAAGGAGGAAACTGGG  450

seq1  TGGGAGGGGATG  461
      ||||||||||||
seq2  TGGGAGGGGATG  462

seq1: chr15_10625173_10626300
seq2: B6Ng01-240J03.g_69_1188 (reverse)

seq1  ATGCAAGGCCAGT-AAGT-AGTCATATTAATTCACGAAAGCAGACCATGG  48
      ||||||||||||| |||| ||||  ||||  ||  |||||||||||||||
seq2  ATGCAAGGCCAGTAAAGTAAGTC-CATTA--TCCAGAAAGCAGACCATGG  47

seq1  CTGTGTACACATATATTT-AGTGTTTGAATCACAAGAATACATTAGCACC  97
      |||||||||||| ||||| |||||||||||||| |||||||| ||||| |
seq2  CTGTGTACACAT-TATTTAAGTGTTTGAATCAC-AGAATACA-TAGCA-C  93

seq1  TGGCAGACCATACCACATGACCCAAATCCTCTGAACTACAGTAGAATTAG  147
      | ||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TTGCAGACCATACCACATGACCC-AATCCTCTGAACTACAGTAG-ATTAG  141

seq1  GGGAGCAAGGTCCTCTAGCTAATCCTTGCATACTGGCATGTGGAAATTAA  197
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GGGAGCAA-GTCCTCTAGCTAATCC-TGCATACTGGCATGTGGAAATTAA  189

seq1  TTACTGCACAGAACCCTCAGTAACAGCACAGCACTCATGTGTACCCAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCACAGAACCCTCAGTAACAGCACAGCACTCATGTGTACCCAGAG  239

seq1  GAGCTTTGAGACGCTCTTCTTCTGCACTGTAAAGAACACATCAGACTTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAGACGCTCTTCTTCTGCACTGTAAAGAACACATCAGACTTAA  289

seq1  AATCCGCACCCACAAAGGCATCAAGTAGAAGGAACCAAAATACTTCTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCACCCACAAAGGCATCAAGTAGAAGGAACCAAAATACTTCTTGT  339

seq1  TTCCTCAGACAATAATCTCTCTCCACATCAAAGATAGATTCTTACCAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGACAATAATCTCTCTCCACATCAAAGATAGATTCTTACCAAGA  389

seq1  GCTATGCAAACATGTGGTCCTTTCAATCTGGCAGAAGAAAAGGCCTCTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAAACATGTGGTCCTTTCAATCTGGCAGAAGAAAAGGCCTCTCC  439

seq1  AGCCCAACTATTCCAGGAAGATGGCTGTCCCAACACCACCATCTTTCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACTATTCCAGGAAGATGGCTGTCCCAACACCACCATCTTTCCAA  489

seq1  CCCTGCAGCAGCTGCTCTAGCTCGGCCTCCTAGTCTGGGGCTTCACCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCAGCTGCTCTAGCTCGGCCTCCTAGTCTGGGGCTTCACCTAG  539

seq1  GAGTTACAACACCCCAGCTTCTGAAACAAAGAAAATAAACCGGGCATCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAACACCCCAGCTTCTGAAACAAAGAAAATAAACCGGGCATCTG  589

seq1  GACCCACTAAATACTTCCTCTACAGCAGGCTGGTCTAGCCTTCAACACTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTAAATACTTCCTCTACAGCAGGCTGGTCTAGCCTTCAACACTG  639

seq1  AATTTGAAGGGCATTTGGACATGCAGGAAGGAGAATTTGCACCACAAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAGGGCATTTGGACATGCAGGAAGGAGAATTTGCACCACAAGAG  689

seq1  ATTCACAACTTTGCATGTAGAAAACAGCTTTGGAAAAGATTCTTATAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACTTTGCATGTAGAAAACAGCTTTGGAAAAGATTCTTATAATT  739

seq1  AGGTATTAAATACGGCACACTCACCGGAAATTTTTGAGGACAACAATAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTAAATACGGCACACTCACCGGAAATTTTTGAGGACAACAATAAG  789

seq1  ATCAGAGAATCGATTATAAATGGGACAGGATTCCAACCGGCTATGAGCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAATCGATTATAAATGGGACAGGATTCCAACCGGCTATGAGCAT  839

seq1  AGAATTTAGGTTGTGGTCATGGCGGGGGGAGGGTGTGTGAACACACATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAGGTTGTGGTCATGGCGGGGGGAGGGTGTGTGAACACACATGA  889

seq1  CATGGTGTCCCTCCAGACCTGAGTCAGACATCTGTGCAACCTCCTAAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCCCTCCAGACCTGAGTCAGACATCTGTGCAACCTCCTAAAGC  939

seq1  AGTGTCCAGTCTCTCATAATGCTGAGTGTACCCACCAGGAATCACTGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAGTCTCTCATAATGCTGAGTGTACCCACCAGGAATCACTGCAG  989

seq1  AATGTCTCCAAGATTCACCCCAAGAAAGATCGCCTTAGATTCTGGCACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCAAGATTCACCCCAAGAAAGATCGCCTTAGATTCTGGCACAA  1039

seq1  GAGAGTTCAGCAGCCCTTGTTTAATTTTTCCAGAAAATTTGAAAATTCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCAGCAGCCCTTGTTTAATTTTTCCAGAAAATTTGAAAATTCCT  1089

seq1  ATCTCAGGCTGCCCACTGACTTAGGAACAGA  1128
      |||||||||||||||||||||||||||||||
seq2  ATCTCAGGCTGCCCACTGACTTAGGAACAGA  1120