BAC Information

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BAC

Clone NameB6Ng01-240P20
Chromosome15 (Build37)
Map Location 53,730,084 - 53,856,582
singlet/doubletdoublet
Overlap geneSamd12
Upstream geneLOC100039745, Ext1, EG665097
Downstream geneEG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240P20.bB6Ng01-240P20.g
ACCGA051017GA051018
length1,2021,134
definitionB6Ng01-240P20.b B6Ng01-240P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,730,084 - 53,731,275)(53,855,460 - 53,856,582)
sequence
gaattcctcaacatggtgttcagtataggattcaaataactcataatcac
acccagtgactcatccaactctcattcacccattcattcagagagcacac
atgggctagacataagacagaatgaaaagggagttataaaagtcttggtg
ggatagcacaatggcagagaagcctcttgtccattgcatagagcagaggg
tttcatcaaaatgcttctggtctctctcctcatcttcttgcagggataaa
aacagaggatagtaatcttatgtgcatgcctctgggagccacagggcaca
ggcttccgcaggaagttgtggatgtcatttctttctgctttaaggctgta
agtatgaggggtggagcctctacaagggtgagttcacccaaagagcagta
tgaacatgctcactgactaaatgactcagagtctgaaaggtgacccaaga
tgatcgcttgtgataaaggtggtattgttatttcatattgttattccttt
ctaggggcttagttcttaaaccaaggtgggtagggtcagcatttattagg
tctccaaacccagtatcccatgacttcgacaaagtacctattctcttccc
ctttgccagctgttagttagcctttcaagaggctcattccagaaaaacta
cagactctgaacactgaatggattgtaagatatcatttgacagactaata
tgatcaattaagaacaacaactcggatcacaaacgtcacttagagcacac
agctttccacttgaaatactttgcttgacaggagggggggcttctagtgc
tgaaaattggaactcatctttcttgccatctaagaagagctattctgttg
ccctgctgtagaaacactaagagcaggctgctcactcctcttaaaacaaa
acaaataaacaacgaactaacaaaaaaaaaaatcccccatggaagataaa
tcctttctctagctctgtgaaacatgccgcttattcatgaaaacacttgc
tgtctcctaagtttccagggcactgctcatagaatacagagaccaactat
aacatactgctagctggatcagatttctgggtctaacatttcccccctcc
tcccttataaaggtacaacctaaactcctgaatgtcagatccacattcgg
tgagttagttgcctcatgctaatggcatggaggacgatgacctagagagt
ct
gaattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcc
tctgcctcccaagtgctggattaaaggcgtacaccaccctctgtgattct
ttggagctgatgttgcattccactcacccatgatcccgaggcgatcccga
ggtcttgccatgtggagagcactctggagcccttagctgcctccactggg
ctcagaaggaagatggcaggggatggcccctacctgaacggatcctagcc
tctggtggggtgaggttcctttgtccctgttcctgtgggcacaagacctt
ccctgattcttattgtgttccattcacttgtgatcccgaggtgttcccaa
ggtcctgaggcgtggaaagcactctcgcctcagatcttttcatttcagct
tcagggtgtctgacgccctcttctgatcttcatgaacatgtgcaaactta
catacttgtacacgcagagagatataaaccaagatttttttaatttattt
ttttttaatttttatttttttattaggtattttcctcgtttacactttca
atgctatcatgcaacctaatttttaaaactaccctaatgggaataacagc
aggaaaacaattatacataacaaaattcacttgaaaacactgataagact
tagtgaaatctgaaatttggatttataaatatcactaccgttcctaccat
gtcgagcataattctcaaaagcacacctaattcagaacaaaagaaaaagg
cataaaatactgctaaattagagcatagcccaagtaggcaatgaggaaga
aactcaggtgtggatttgaatgaaatttgcggcagccaatgggttggcac
tggcaatcatcacgttgttttattattggctcaggttacagaatcagatt
taaccactagacaaagggagagaaggggttattcctttaagaattttttt
ttttctcctcgggcttacaggatgggaccaacaaggaaaggttctaaagc
atgcatgagaacaggacctttggcagttcttggaaacattcatggtaatg
gtgagggtgtgaggccaaggttggttacttgacacttgggttaaacagga
ttgactactccagttcaagaacggtcttggcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53730084_53731275
seq2: B6Ng01-240P20.b_51_1252

seq1  GAATTCCTCAACATGGTGTTCAGTATAGGATTCAAATAACTCATAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAACATGGTGTTCAGTATAGGATTCAAATAACTCATAATCAC  50

seq1  ACCCAGTGACTCATCCAACTCTCATTCACCCATTCATTCAGAGAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGACTCATCCAACTCTCATTCACCCATTCATTCAGAGAGCACAC  100

seq1  ATGGGCTAGACATAAGACAGAATGAAAAGGGAGTTATAAAAGTCTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTAGACATAAGACAGAATGAAAAGGGAGTTATAAAAGTCTTGGTG  150

seq1  GGATAGCACAATGGCAGAGAAGCCTCTTGTCCATTGCATAGAGCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCACAATGGCAGAGAAGCCTCTTGTCCATTGCATAGAGCAGAGGG  200

seq1  TTTCATCAAAATGCTTCTGGTCTCTCTCCTCATCTTCTTGCAGGGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAAAATGCTTCTGGTCTCTCTCCTCATCTTCTTGCAGGGATAAA  250

seq1  AACAGAGGATAGTAATCTTATGTGCATGCCTCTGGGAGCCACAGGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGATAGTAATCTTATGTGCATGCCTCTGGGAGCCACAGGGCACA  300

seq1  GGCTTCCGCAGGAAGTTGTGGATGTCATTTCTTTCTGCTTTAAGGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGCAGGAAGTTGTGGATGTCATTTCTTTCTGCTTTAAGGCTGTA  350

seq1  AGTATGAGGGGTGGAGCCTCTACAAGGGTGAGTTCACCCAAAGAGCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGGGGTGGAGCCTCTACAAGGGTGAGTTCACCCAAAGAGCAGTA  400

seq1  TGAACATGCTCACTGACTAAATGACTCAGAGTCTGAAAGGTGACCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGCTCACTGACTAAATGACTCAGAGTCTGAAAGGTGACCCAAGA  450

seq1  TGATCGCTTGTGATAAAGGTGGTATTGTTATTTCATATTGTTATTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGCTTGTGATAAAGGTGGTATTGTTATTTCATATTGTTATTCCTTT  500

seq1  CTAGGGGCTTAGTTCTTAAACCAAGGTGGGTAGGGTCAGCATTTATTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGCTTAGTTCTTAAACCAAGGTGGGTAGGGTCAGCATTTATTAGG  550

seq1  TCTCCAAACCCAGTATCCCATGACTTCGACAAAGTACCTATTCTCTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAACCCAGTATCCCATGACTTCGACAAAGTACCTATTCTCTTCCC  600

seq1  CTTTGCCAGCTGTTAGTTAGCCTTTCAAGAGGCTCATTCCAGAAAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAGCTGTTAGTTAGCCTTTCAAGAGGCTCATTCCAGAAAAACTA  650

seq1  CAGACTCTGAACACTGAATGGATTGTAAGATATCATTTGACAGACTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGAACACTGAATGGATTGTAAGATATCATTTGACAGACTAATA  700

seq1  TGATCAATTAAGAACAACAACTCGGATCACAAACGTCACTTAGAGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATTAAGAACAACAACTCGGATCACAAACGTCACTTAGAGCACAC  750

seq1  AGCTTTCCACTTGAAATACTTTGCTTGACAGGAGGGGGGGCTTCTAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCACTTGAAATACTTTGCTTGACAGGAGGGGGGGCTTCTAGTGC  800

seq1  TGAAAATTGGAACTCATC-TTCTTGCCATCTAAGAAGAGCTATTCTGTTT  849
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TGAAAATTGGAACTCATCTTTCTTGCCATCTAAGAAGAGCTATTCTG-TT  849

seq1  GCCCTGCTGTAGAAACACTAAGAGCAGGCTGCTCACTCCTCTTAAAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGTAGAAACACTAAGAGCAGGCTGCTCACTCCTCTTAAAACAA  899

seq1  AACAAATAAAACAAACGAACTAACAAAAAAAAAAAATCCCCCATGG-AGA  948
      ||||||||||   ||||||||||| ||||||||||||||||||||| |||
seq2  AACAAATAAA--CAACGAACTAAC-AAAAAAAAAAATCCCCCATGGAAGA  946

seq1  TAAATCC-TTCTCTAGCTCTGTGAAACATG-CGCTTATTCATG-AAACAA  995
      ||||||| |||||||||||||||||||||| |||||||||||| ||||| 
seq2  TAAATCCTTTCTCTAGCTCTGTGAAACATGCCGCTTATTCATGAAAACAC  996

seq1  CTGCTGTCTCCTAAG-TTCCA-GGCACTGCTCATAGAATACAGAGA-CAA  1042
       |||||||||||||| ||||| |||||||||||||||||||||||| |||
seq2  TTGCTGTCTCCTAAGTTTCCAGGGCACTGCTCATAGAATACAGAGACCAA  1046

seq1  CTATAACATTACTGCTAG-TGGATCAGTATTTCT-GGTCT-ACATTTCCC  1089
      |||||||| ||||||||| |||||||| |||||| ||||| |||||||||
seq2  CTATAACA-TACTGCTAGCTGGATCAG-ATTTCTGGGTCTAACATTTCCC  1094

seq1  CC--TCTCCC-TATAATAGTACAAC--TAACT-CTGAAGGTCAGAATCAC  1133
      ||   ||||| |||||  |||||||   |||| ||||| ||||||  |||
seq2  CCCTCCTCCCTTATAAAGGTACAACCTAAACTCCTGAATGTCAGATCCAC  1144

seq1  A-TCGGTGAGTAGGGTTGCCTTCATGCTGTATGCATGGAGAGCAGATGA-  1181
      | |||||||||   |||||| |||||||    |||||||| |  ||||| 
seq2  ATTCGGTGAGT-TAGTTGCC-TCATGCTAATGGCATGGAG-GACGATGAC  1191

seq1  CTAGAGAGTCT  1192
      |||||||||||
seq2  CTAGAGAGTCT  1202

seq1: chr15_53855460_53856582
seq2: B6Ng01-240P20.g_69_1202 (reverse)

seq1  CTTGGCAAGACCGTTCTTG-ACTGAATTAGTCAAATTCTGTTTA--CCAA  47
      |||| |||||||||||||| |||| | ||||| ||| |||||||  ||||
seq2  CTTGCCAAGACCGTTCTTGAACTGGAGTAGTC-AATCCTGTTTAACCCAA  49

seq1  GTGGCTCAGTTACCAAACTTGGCCTTCACACCTTCAC--ATACAATGAAT  95
      ||| |  ||| ||||| ||||||| ||||||| ||||   ||| ||||||
seq2  GTGTC-AAGTAACCAACCTTGGCC-TCACACCCTCACCATTACCATGAAT  97

seq1  GTT--CCAGAACTGCCAAGGGTCCTTGTTCTCATGCATGCTTTTAGAACT  143
      |||  | ||||||||||| ||||| ||||||||||||||| |||||||| 
seq2  GTTTCCAAGAACTGCCAAAGGTCC-TGTTCTCATGCATGC-TTTAGAACC  145

seq1  TTTTCTTG-TGGT-CCAT-CTGT-AGCCCGAGGAG--AAAAAAAAATTCT  187
      ||| |||| |||| |||| |||| |||||||||||  |||||||||||||
seq2  TTTCCTTGTTGGTCCCATCCTGTAAGCCCGAGGAGAAAAAAAAAAATTCT  195

seq1  TAA--GGATAACCCCTTCTCT-CCTTTGTCTAGTGGTTAAATCTGATTCT  234
      |||  | |||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAAGGAATAACCCCTTCTCTCCCTTTGTCTAGTGGTTAAATCTGATTCT  245

seq1  GTAACCTGAGCCAATAATAAAACAACGTGATGATTTGCCAGTGCCAA-CC  283
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GTAACCTGAGCCAATAATAAAACAACGTGATGA-TTGCCAGTGCCAACCC  294

seq1  ATTGGCTGCCGCAAATTTCATTCAAATCCACACCTGAGTTTCTTCCTCAT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGCCGCAAATTTCATTCAAATCCACACCTGAGTTTCTTCCTCAT  344

seq1  TGCCTACTTGGGCTATGCTCTAATTTAGCAGTATTTTATGCCTTTTTCTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTTGGGCTATGCTCTAATTTAGCAGTATTTTATGCCTTTTTCTT  394

seq1  TTGTTCTGAATTAGGTGTGCTTTTGAGAATTATGCTCGACATGGTAGGAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAATTAGGTGTGCTTTTGAGAATTATGCTCGACATGGTAGGAA  444

seq1  CGGTAGTGATATTTATAAATCCAAATTTCAGATTTCACTAAGTCTTATCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTGATATTTATAAATCCAAATTTCAGATTTCACTAAGTCTTATCA  494

seq1  GTGTTTTCAAGTGAATTTTGTTATGTATAATTGTTTTCCTGCTGTTATTC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAAGTGAATTTTGTTATGTATAATTGTTTTCCTGCTGTTATTC  544

seq1  CCATTAGGGTAGTTTTAAAAATTAGGTTGCATGATAGCATTGAAAGTGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGGTAGTTTTAAAAATTAGGTTGCATGATAGCATTGAAAGTGTA  594

seq1  AACGAGGAAAATACCTAATAAAAAAATAAAAATTAAAAAAAAATAAATTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGAAAATACCTAATAAAAAAATAAAAATTAAAAAAAAATAAATTA  644

seq1  AAAAAATCTTGGTTTATATCTCTCTGCGTGTACAAGTATGTAAGTTTGCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTGGTTTATATCTCTCTGCGTGTACAAGTATGTAAGTTTGCA  694

seq1  CATGTTCATGAAGATCAGAAGAGGGCGTCAGACACCCTGAAGCTGAAATG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATGAAGATCAGAAGAGGGCGTCAGACACCCTGAAGCTGAAATG  744

seq1  AAAAGATCTGAGGCGAGAGTGCTTTCCACGCCTCAGGACCTTGGGAACAC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTGAGGCGAGAGTGCTTTCCACGCCTCAGGACCTTGGGAACAC  794

seq1  CTCGGGATCACAAGTGAATGGAACACAATAAGAATCAGGGAAGGTCTTGT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATCACAAGTGAATGGAACACAATAAGAATCAGGGAAGGTCTTGT  844

seq1  GCCCACAGGAACAGGGACAAAGGAACCTCACCCCACCAGAGGCTAGGATC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGGAACAGGGACAAAGGAACCTCACCCCACCAGAGGCTAGGATC  894

seq1  CGTTCAGGTAGGGGCCATCCCCTGCCATCTTCCTTCTGAGCCCAGTGGAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGGTAGGGGCCATCCCCTGCCATCTTCCTTCTGAGCCCAGTGGAG  944

seq1  GCAGCTAAGGGCTCCAGAGTGCTCTCCACATGGCAAGACCTCGGGATCGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAAGGGCTCCAGAGTGCTCTCCACATGGCAAGACCTCGGGATCGC  994

seq1  CTCGGGATCATGGGTGAGTGGAATGCAACATCAGCTCCAAAGAATCACAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATCATGGGTGAGTGGAATGCAACATCAGCTCCAAAGAATCACAG  1044

seq1  AGGGTGGTGTACGCCTTTAATCCAGCACTTGGGAGGCAGAGGCAGGCAGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGTGTACGCCTTTAATCCAGCACTTGGGAGGCAGAGGCAGGCAGA  1094

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1123
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1134