BAC Information

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BAC

Clone NameB6Ng01-241O12
Chromosome15 (Build37)
Map Location 50,277,956 - 50,425,120
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O12.bB6Ng01-241O12.g
ACCGA051701GA051702
length1,1151,037
definitionB6Ng01-241O12.b B6Ng01-241O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,277,956 - 50,279,062)(50,424,071 - 50,425,120)
sequence
gaattcaccaaattctcagagcatagctctcagtagctaatggccttcta
caggtcccattctgtgatgcttccatgatggctttcaattactccatatg
ctggagtgtgggcacccaagtgatagcaccagctaagtgatagctgtgag
catgagtatgcagaacacctacaggaacaagcaacatgcttcagatagtg
ggaataaccatggacttttcatcttctctttcaaacattctgctagcata
tcccattgtcacactgatcaaatctaaataggtaccagttgacacatgag
tgtgaaaagtgtttattatgtagtcaaactctctgcaccatgagtgaagt
aggcaaagataattcagagagccaccatgtctaagtaggtcatgtatatt
atgttaaaacactagatggggttgagcaggaacatatgattagcatttag
gaagtgataaaaaaaattagtaaattcttcatactcaattttgaaatgaa
agaaaagagggaagaaggtagagagagagaaggaagggggaaagaaggta
gtgaaggaaagaggaagaaagggcagaaaggataagtgaaagagagagac
gaaaaataaaaaatgtttatgtgctaactttatttctttaaaaagggagt
ctgcaggggaagagtacttataatttattgtctatattttgtattggtga
aaaataaatattaggtactagtatatgaaatagtgcaaggtacttttcca
caaaagtggaaatttggagaatgccactagcaaagagaattttttttctg
aactaatttttgtacaatacaaaatgtttgggagaaaaaaactttaaatt
tattcttatgtctttcaggtagaagaaataataaaaaattattagtaggc
aaactttcatttgtaaatattattatattctatattagactctcaaggaa
ttcaagtaataaactataatttgtattagtaatatttattttatgttaca
aacatatacttaatcgacaaatgtgaaaaggtgttatgaccatgcatgcc
tcatgcctcttgtgaattaactagcccatagggttcaaaaacctatgatc
caccgtggaataaaa
gaattcttcagactgatacatttctttttttttttttttttttttttttt
ggttttctagatatctgagtagtaattcaatgtcctccggtaattttgta
ttgttggagggctaaacaatttcaccaggaaacagttggtactaaatgca
atttctctctatgtcttacactgtggttcaccaaattactttttaaaatg
gcagtgaaacagtttgaaagacaacgcaaggagaatttcaacgattttca
cttcatagaaaagaacattcgtccagatgcattccttgctttctcttgct
tctgggtttgtcatcctttgaggatgtggaatcacgtaaaaataaaatct
cctttttcatcttataagtcatcttacatatgaaaaacaatcacaatgtt
tataaacaacaattagcctgtatctaattaacagggaaacctgttgttgc
tatggaacaagggtaagacattacttatcctgcttctccactctagatga
caagtagtatggctatcagaaaacagagttccaacatttaaattaaaaag
aaaaaaatcaaagttaatggcttgtattagagtgaatttgtaattgaaaa
gatattaatgttcttttgagaatatttttaggacttgaagaatagggatg
acaatatgtataattaataagcggctacaaaacagaggtgagtctacagt
aggcactcaagacattcctgaaatgaataagatgaacatcttgatcattg
tcagggaatatgtagcagaaatctaccatttaatatgaacatcttattta
agagtgtttcataagttagcaaatgatttgggaaaaccaattccagactc
aatattgggaagagattgaagaaaaatacagaccggaatatgggactttg
attttggaataaagtttgcaagctggtgtaacaaaatagtacttaggatg
ttaagggagataaacctacagaaaagaagcaagactgagaacatctatga
gacccctagactgcgatcaccaagcaatgtgcttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50277956_50279062
seq2: B6Ng01-241O12.b_51_1165

seq1  GAATTCACCAAATTCTCAGAGCATAGCTCTCAGTAGCTAATGGCCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAATTCTCAGAGCATAGCTCTCAGTAGCTAATGGCCTTCTA  50

seq1  CAGGTCCCATTCTGTGATGCTTCCATGATGGCTTTCAATTACTCCATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCATTCTGTGATGCTTCCATGATGGCTTTCAATTACTCCATATG  100

seq1  CTGGAGTGTGGGCACCCAAGTGATAGCACCAGCTAAGTGATAGCTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGTGGGCACCCAAGTGATAGCACCAGCTAAGTGATAGCTGTGAG  150

seq1  CATGAGTATGCAGAACACCTACAGGAACAAGCAACATGCTTCAGATAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATGCAGAACACCTACAGGAACAAGCAACATGCTTCAGATAGTG  200

seq1  GGAATAACCATGGACTTTTCATCTTCTCTTTCAAACATTCTGCTAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAACCATGGACTTTTCATCTTCTCTTTCAAACATTCTGCTAGCATA  250

seq1  TCCCATTGTCACACTGATCAAATCTAAATAGGTACCAGTTGACACATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGTCACACTGATCAAATCTAAATAGGTACCAGTTGACACATGAG  300

seq1  TGTGAAAAGTGTTTATTATGTAGTCAAACTCTCTGCACCATGAGTGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGTGTTTATTATGTAGTCAAACTCTCTGCACCATGAGTGAAGT  350

seq1  AGGCAAAGATAATTCAGAGAGCCACCATGTCTAAGTAGGTCATGTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGATAATTCAGAGAGCCACCATGTCTAAGTAGGTCATGTATATT  400

seq1  ATGTTAAAACACTAGATGGGGTTGAGCAGGAACATATGATTAGCATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAACACTAGATGGGGTTGAGCAGGAACATATGATTAGCATTTAG  450

seq1  GAAGTGATAAAAAAAATTAGTAAATTCTTCATACTCAATTTTGAAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATAAAAAAAATTAGTAAATTCTTCATACTCAATTTTGAAATGAA  500

seq1  AGAAAAGAGGGAAGAAGGTAGAGAGAGAGAAGGAAGGGGGAAAGAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGGGAAGAAGGTAGAGAGAGAGAAGGAAGGGGGAAAGAAGGTA  550

seq1  GTGAAGGAAAGAGGAAGAAAGGGCAGAAAGGATAAGTGAAAGAGAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAAAGAGGAAGAAAGGGCAGAAAGGATAAGTGAAAGAGAGAGAC  600

seq1  GAAAAATAAAAAATGTTTATGTGCTAACTTTATTTCTTTAAAAAGGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAAAAATGTTTATGTGCTAACTTTATTTCTTTAAAAAGGGAGT  650

seq1  CTGCAGGGGAAGAGTACTTATAATTTATTGTCTATATTTTGTATTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGGAAGAGTACTTATAATTTATTGTCTATATTTTGTATTGGTGA  700

seq1  AAAATAAATATTAGGTACTAGTATATGAAATAGTGCAAGGTACTTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATATTAGGTACTAGTATATGAAATAGTGCAAGGTACTTTTCCA  750

seq1  CAAAAGTGGAAATTTGGAGAATGCCACTAGCAAAGAGAATTTTTTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGGAAATTTGGAGAATGCCACTAGCAAAGAGAATTTTTTTTCTG  800

seq1  AACTAATTTTTGTACAATACAAAATGTTT-GGAGAAAAAAACTTTAAATT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTAATTTTTGTACAATACAAAATGTTTGGGAGAAAAAAACTTTAAATT  850

seq1  TATTCTTATGTC-TTCAGGTAGAAG-AATAAT-AAAGATTATTAGTAGGC  896
      |||||||||||| |||||||||||| |||||| ||| |||||||||||||
seq2  TATTCTTATGTCTTTCAGGTAGAAGAAATAATAAAAAATTATTAGTAGGC  900

seq1  AAACTTTCA-TTGTAAATATTATTTATATTCTATATTAGACTCTCAAAGG  945
      ||||||||| |||||||||||| |||||||||||||||||||||| ||||
seq2  AAACTTTCATTTGTAAATATTA-TTATATTCTATATTAGACTCTC-AAGG  948

seq1  AATTCAAGTATAAAATTAT-ATTTGTA-TAGTATAATTTATTTTATGTTA  993
      ||||||||||  ||| ||| ||||||| |||||  |||||||||||||||
seq2  AATTCAAGTAATAAACTATAATTTGTATTAGTAATATTTATTTTATGTTA  998

seq1  CAAACATATACTTAATCGACAAAGGTGAAAAGGTGTTAGGACCATGCATG  1043
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CAAACATATACTTAATCGACAAATGTGAAAAGGTGTTATGACCATGCATG  1048

seq1  -CTCATG-CTCTTGTGAAAATAAACTAG-CCATAGG--TCAAAAACATAT  1088
       |||||| ||||||||  ||| |||||| |||||||  |||||||| |||
seq2  CCTCATGCCTCTTGTG--AATTAACTAGCCCATAGGGTTCAAAAACCTAT  1096

seq1  GAATCCACAGTGG-ATAAAA  1107
      | |||||| |||| ||||||
seq2  G-ATCCACCGTGGAATAAAA  1115

seq1: chr15_50424071_50425120
seq2: B6Ng01-241O12.g_67_1103 (reverse)

seq1  CTGAAGCACATGGCCTGGTGAAACCGCAAGTTCTAAGGGGTCTCATAGAT  50
      ||||||||||| || |||||  | ||||   ||| |||||||||||||||
seq2  CTGAAGCACATTGCTTGGTG--ATCGCA--GTCT-AGGGGTCTCATAGAT  45

seq1  GTTTCTCAGTCTTGCTTTCTTTTCCTGTAGGTTTTAATCTCCCCTTAACA  100
      | ||||||||||||| ||||||| ||||||||||  |||| |||||||||
seq2  G-TTCTCAGTCTTGC-TTCTTTT-CTGTAGGTTT--ATCT-CCCTTAACA  89

seq1  TCCTAAGTACTTAATTTTGTTACACCCAGCTTGCAAACTTTATTCCAAAA  150
      |||||||||||  ||||||||||| |||||||||||||||||||||||||
seq2  TCCTAAGTACT--ATTTTGTTACA-CCAGCTTGCAAACTTTATTCCAAAA  136

seq1  TCAAAAGTCCCATATT-CGGTCTGTATTTTTCTTCAATCTCTT-CCAATA  198
      || ||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TC-AAAGTCCCATATTCCGGTCTGTATTTTTCTTCAATCTCTTCCCAATA  185

seq1  TTGAGTCTTGAATTGGTTTT-CCAAATCATTTGCTAACTTATGAAACACT  247
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAGTCTGGAATTGGTTTTCCCAAATCATTTGCTAACTTATGAAACACT  235

seq1  CCTAAATAAGATGTTCATATTAAATGGTAGATTTCTGCTACATATTCCCC  297
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTAAATAAGATGTTCATATTAAATGGTAGATTTCTGCTACATATT-CCC  284

seq1  TGACAATGATCAAGATGTTCATCTTATTCATTTCAGGAATGTCTTGAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGATCAAGATGTTCATCTTATTCATTTCAGGAATGTCTTGAGTG  334

seq1  CCTACTGTAGACTCACCTCTGTTTTGTAGCCGCTTATTAATTATACATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTAGACTCACCTCTGTTTTGTAGCCGCTTATTAATTATACATAT  384

seq1  TGTCATCCCTATTCTTCAAGTCCTAAAAATATTCTCAAAAGAACATTAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCCTATTCTTCAAGTCCTAAAAATATTCTCAAAAGAACATTAAT  434

seq1  ATCTTTTCAATTACAAATTCACTCTAATACAAGCCATTAACTTTGATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCAATTACAAATTCACTCTAATACAAGCCATTAACTTTGATTTT  484

seq1  TTTCTTTTTAATTTAAATGTTGGAACTCTGTTTTCTGATAGCCATACTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAATTTAAATGTTGGAACTCTGTTTTCTGATAGCCATACTAC  534

seq1  TTGTCATCTAGAGTGGAGAAGCAGGATAAGTAATGTCTTACCCTTGTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTAGAGTGGAGAAGCAGGATAAGTAATGTCTTACCCTTGTTCC  584

seq1  ATAGCAACAACAGGTTTCCCTGTTAATTAGATACAGGCTAATTGTTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACAACAGGTTTCCCTGTTAATTAGATACAGGCTAATTGTTGTTT  634

seq1  ATAAACATTGTGATTGTTTTTCATATGTAAGATGACTTATAAGATGAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTGTGATTGTTTTTCATATGTAAGATGACTTATAAGATGAAAA  684

seq1  AGGAGATTTTATTTTTACGTGATTCCACATCCTCAAAGGATGACAAACCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTTTATTTTTACGTGATTCCACATCCTCAAAGGATGACAAACCC  734

seq1  AGAAGCAAGAGAAAGCAAGGAATGCATCTGGACGAATGTTCTTTTCTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGAGAAAGCAAGGAATGCATCTGGACGAATGTTCTTTTCTATG  784

seq1  AAGTGAAAATCGTTGAAATTCTCCTTGCGTTGTCTTTCAAACTGTTTCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAATCGTTGAAATTCTCCTTGCGTTGTCTTTCAAACTGTTTCAC  834

seq1  TGCCATTTTAAAAAGTAATTTGGTGAACCACAGTGTAAGACATAGAGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTAAAAAGTAATTTGGTGAACCACAGTGTAAGACATAGAGAGA  884

seq1  AATTGCATTTAGTACCAACTGTTTCCTGGTGAAATTGTTTAGCCCTCCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTTAGTACCAACTGTTTCCTGGTGAAATTGTTTAGCCCTCCAA  934

seq1  CAATACAAAATTACCGGAGGACATTGAATTACTACTCAGATATCTAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAAATTACCGGAGGACATTGAATTACTACTCAGATATCTAGAAA  984

seq1  ACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTATCAGTCTGAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTATCAGTCTGAAGAA  1034

seq1  TTC  1050
      |||
seq2  TTC  1037