BAC Information

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BAC

Clone NameB6Ng01-242N05
Chromosome15 (Build37)
Map Location 17,589,862 - 17,705,721
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242N05.bB6Ng01-242N05.g
ACCGA052367GA052368
length1,1101,077
definitionB6Ng01-242N05.b B6Ng01-242N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,704,648 - 17,705,721)(17,589,862 - 17,590,942)
sequence
gaattcatgtaagaaagcaaaagattttaaggaacaccaaataagactat
ctagacatatgtaaaactcactgtgacaaataattatagagagaaattca
aaattacccattttacaacattctatataaacattcatatctttagtcta
atatctcaacattgaagaattaaaaaaataataactatactaataacaag
ccatagaaagtgataaaagaagtagagtttcattgtgtttaatattgaca
aaactgaatggaactgaagattttctgtgtttatttttactttatttgta
tatattcctgtactcatgataataagtatcatttgaaagtaacttaattg
aaatgtaaatatgttatttcataatcttcatgaaaactaaaatgtatcaa
ataattttagataaaaaaatacaagtaaatcaaaacataatcatagaaga
gttgacttgaccatcaatgaagactctaggaaatggagaaagaacaaaag
gaactgccaccaaaccaataaactcataagttaatactcatgaagatgtc
tttcctatacataattaatacaaacacaaattgttaaaatatttgattag
aaataatagtggctacatgagttggtttttttgtttgtttgtttgttttg
ttttgtttttttgttttttttagacatgtaaccatagtttgtaagaattt
cacttcacctctaagaattcaggtagatgtcagatcaaaaaagttttttt
ttttgtttgtttgttttgcttttctaaagcaggaaaggacacaaagacac
aaatagattacaaaaagtcagggtggtgtattagtcagtgtttgtattcc
tgcacaaaacatcatgtccaagaagcaagctggggaggaaagaatttatt
cagcttacatttctacattgctgatcatcaccaacggaagtcaggacagg
aactcacacagagccagaacctggaggcagtgttgtccttggccctgagg
tgattgatgcccagtatagagaatgcagctaatgagtgggtgagtaggtg
gtgatgcaccctcatagaggcagaggagatgaactggctgtagagttttc
tgatgggaga

gaattctccacacatccatagaaaaggaattattcaatctacaaagcaat
aataaggtattaatttaaggcttggatgatcatatatatttataaaataa
aattcaatattattttgtctagattactaaatctacacttttttagacag
taatcatgtgtttataatattttatttatattatttatattcattttatt
aaaagtgcaagaagtattctttcacaaaacacagtttcttagaatttatt
ctccactttttctgatttctaatgtgtgtcttgcatcagagttgttggtt
tttttatgttttgggtttttttttctttgttcacaggtattaagaattaa
gtgaagatgcagtaacctaagacaggacaaaaaaaaattgaatcctgcag
aagtctctcaacatgtagtttcaggggaagaaattagttttcaatgtaga
tgtttgagtaaaaacaaacttttagaaaaatatcgaactacagtttaagt
gaaagccaaaactacttcccagacctaagggaaagtcccttgatgtgcta
gtcaatttgccatttaaagcactgtccagcagttatgcacatgcttcctt
tatccccttcaaaccctttaccaaaggtattaagagaaaatagtttcttt
cttttctaggtcttttccttttgctgatttccatagcttttgttgtatat
gtagagttcacttcatctactctgaacaacataaattatttttcgtattt
ctcataggataggcaaaaactgacaagatcttctgtttttcccagattta
agttttttccccctaattttaatttaaaatcaatttttataacccacaaa
taaataaacaagagtttaaacaaattcttagggacaaaaatatattttta
tcaccacatttcagacttttacgggttttgtttatcatgggagcaaaaca
aagcatctgaaatttgtattagattggaccaacagacgtagagactggtg
agcatctgcctcatacagaagcaaatacttgcagccacattgactgagca
cagtgttccacaatggagagtagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17704648_17705721
seq2: B6Ng01-242N05.b_90_1155 (reverse)

seq1  TCTCCCCTTCAGAAAACTCCTACA-CCAGTCCATCTCCCTCTGCCTCTAT  49
      ||| ||| |||||||||| ||||| ||||| ||||| |||||||||||||
seq2  TCT-CCCATCAGAAAACT-CTACAGCCAGTTCATCT-CCTCTGCCTCTAT  47

seq1  GAGGGTGCATCCACACCTACTCACCCACTCATTTAGCCCTGCCATTTCTC  99
      |||||||||||  |||||||||||||||||| ||||  ||||   |||||
seq2  GAGGGTGCATCACCACCTACTCACCCACTCA-TTAG--CTGC--ATTCTC  92

seq1  TATACTGGGGCATCAATCACCCTCAGGGCCAAGGACAACACTGCCTCCAG  149
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TATACT-GGGCATCAATCA-CCTCAGGGCCAAGGACAACACTGCCTCCAG  140

seq1  GTTCTGGCTCTGTGTGAGTTCCTGTCCTGACTTCCGTTGGTGATGATCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCTCTGTGTGAGTTCCTGTCCTGACTTCCGTTGGTGATGATCAG  190

seq1  CAATGTAGAAATGTAAGCTGAATAAATTCTTTCCTCCCCAGCTTGCTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGAAATGTAAGCTGAATAAATTCTTTCCTCCCCAGCTTGCTTCT  240

seq1  TGGACATGATGTTTTGTGCAGGAATACAAACACTGACTAATACACCACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGATGTTTTGTGCAGGAATACAAACACTGACTAATACACCACCC  290

seq1  TGACTTTTTGTAATCTATTTGTGTCTTTGTGTCCTTTCCTGCTTTAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTGTAATCTATTTGTGTCTTTGTGTCCTTTCCTGCTTTAGAAA  340

seq1  AGCAAAACAAACAAAC-AAAAAAAAAACTTTTTTGATCTGACATCTACCT  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCAAAACAAACAAACAAAAAAAAAAACTTTTTTGATCTGACATCTACCT  390

seq1  GAATTCTTAGAGGTGAAGTGAAATTCTTACAAACTATGGTTACATGTCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGTGAAGTGAAATTCTTACAAACTATGGTTACATGTCTA  440

seq1  AAAAAAACAAAAAAACAAAACAAAACAAACAAACAAACAAAAAAACCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAAAACAAAACAAAACAAACAAACAAACAAAAAAACCAAC  490

seq1  TCATGTAGCCACTATTATTTCTAATCAAATATTTTAACAATTTGTGTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCCACTATTATTTCTAATCAAATATTTTAACAATTTGTGTTTG  540

seq1  TATTAATTATGTATAGGAAAGACATCTTCATGAGTATTAACTTATGAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATGTATAGGAAAGACATCTTCATGAGTATTAACTTATGAGTT  590

seq1  TATTGGTTTGGTGGCAGTTCCTTTTGTTCTTTCTCCATTTCCTAGAGTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTGGTGGCAGTTCCTTTTGTTCTTTCTCCATTTCCTAGAGTCT  640

seq1  TCATTGATGGTCAAGTCAACTCTTCTATGATTATGTTTTGATTTACTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATGGTCAAGTCAACTCTTCTATGATTATGTTTTGATTTACTTGT  690

seq1  ATTTTTTTATCTAAAATTATTTGATACATTTTAGTTTTCATGAAGATTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATCTAAAATTATTTGATACATTTTAGTTTTCATGAAGATTAT  740

seq1  GAAATAACATATTTACATTTCAATTAAGTTACTTTCAAATGATACTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACATATTTACATTTCAATTAAGTTACTTTCAAATGATACTTATT  790

seq1  ATCATGAGTACAGGAATATATACAAATAAAGTAAAAATAAACACAGAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGTACAGGAATATATACAAATAAAGTAAAAATAAACACAGAAAA  840

seq1  TCTTCAGTTCCATTCAGTTTTGTCAATATTAAACACAATGAAACTCTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTCCATTCAGTTTTGTCAATATTAAACACAATGAAACTCTACT  890

seq1  TCTTTTATCACTTTCTATGGCTTGTTATTAGTATAGTTATTATTTTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCACTTTCTATGGCTTGTTATTAGTATAGTTATTATTTTTTTA  940

seq1  ATTCTTCAATGTTGAGATATTAGACTAAAGATATGAATGTTTATATAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAATGTTGAGATATTAGACTAAAGATATGAATGTTTATATAGAA  990

seq1  TGTTGTAAAATGGGTAATTTTGAATTTCTCTCTATAATTATTTGTCACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAAATGGGTAATTTTGAATTTCTCTCTATAATTATTTGTCACAG  1040

seq1  TGAGTTTTACATATGTCTAGATAGTC  1074
      ||||||||||||||||||||||||||
seq2  TGAGTTTTACATATGTCTAGATAGTC  1066


seq1: chr15_17589862_17590942
seq2: B6Ng01-242N05.g_69_1145

seq1  GAATTCTCCACACATCCATAGAAAAGGAATTATTCAATCTACAAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACACATCCATAGAAAAGGAATTATTCAATCTACAAAGCAAT  50

seq1  AATAAGGTATTAATTTAAGGCTTGGATGATCATATATATTTATAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTATTAATTTAAGGCTTGGATGATCATATATATTTATAAAATAA  100

seq1  AATTCAATATTATTTTGTCTAGATTACTAAATCTACACTTTTTTAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATATTATTTTGTCTAGATTACTAAATCTACACTTTTTTAGACAG  150

seq1  TAATCATGTGTTTATAATATTTTATTTATATTATTTATATTCATTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTGTTTATAATATTTTATTTATATTATTTATATTCATTTTATT  200

seq1  AAAAGTGCAAGAAGTATTCTTTCACAAAACACAGTTTCTTAGAATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCAAGAAGTATTCTTTCACAAAACACAGTTTCTTAGAATTTATT  250

seq1  CTCCACTTTTTCTGATTTCTAATGTGTGTCTTGCATCAGAGTTGTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTTTCTGATTTCTAATGTGTGTCTTGCATCAGAGTTGTTGGTT  300

seq1  TTTTTATGTTTTGGGTTTTTTTTTCTTTGTTCACAGGTATTAAGAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTTTGGGTTTTTTTTTCTTTGTTCACAGGTATTAAGAATTAA  350

seq1  GTGAAGATGCAGTAACCTAAGACAGGACAAAAAAAAATTGAATCCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGCAGTAACCTAAGACAGGACAAAAAAAAATTGAATCCTGCAG  400

seq1  AAGTCTCTCAACATGTAGTTTCAGGGGAAGAAATTAGTTTTCAATGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTCAACATGTAGTTTCAGGGGAAGAAATTAGTTTTCAATGTAGA  450

seq1  TGTTTGAGTAAAAACAAACTTTTAGAAAAATATCGAACTACAGTTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGTAAAAACAAACTTTTAGAAAAATATCGAACTACAGTTTAAGT  500

seq1  GAAAGCCAAAACTACTTCCCAGACCTAAGGGAAAGTCCCTTGATGTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAAAACTACTTCCCAGACCTAAGGGAAAGTCCCTTGATGTGCTA  550

seq1  GTCAATTTGCCATTTAAAGCACTGTCCAGCAGTTATGCACATGCTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTGCCATTTAAAGCACTGTCCAGCAGTTATGCACATGCTTCCTT  600

seq1  TATCCCCTTCAAACCCTTTACCAAAGGTATTAAGAGAAAATAGTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTTCAAACCCTTTACCAAAGGTATTAAGAGAAAATAGTTTCTTT  650

seq1  CTTTTCTAGGTCTTTTCCTTTTGCTGATTTCCATAGCTTTTGTTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGGTCTTTTCCTTTTGCTGATTTCCATAGCTTTTGTTGTATAT  700

seq1  GTAGAGTTCACTTCATCTACTCTGAACAACATAAATTATTTTTCGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTCACTTCATCTACTCTGAACAACATAAATTATTTTTCGTATTT  750

seq1  CTCATAGGATAGGCAAAAACTGACAAGATCTTCTGTTTTTCCCAGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGATAGGCAAAAACTGACAAGATCTTCTGTTTTTCCCAGATTTA  800

seq1  AGTTTTTTCCCCCTAATTTTAATTTAAAATCAATTTTTATAACCCACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTCCCCCTAATTTTAATTTAAAATCAATTTTTATAACCCACAAA  850

seq1  TAAAATAAACAAGAGTTTAAACAAATTCTTAGGGAC-AAAATATATTTTT  899
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  T-AAATAAACAAGAGTTTAAACAAATTCTTAGGGACAAAAATATATTTTT  899

seq1  ATCACCACATTTCAGACTTTTAC-GGTTTTGTTTATCAT-GGAGCAAAAC  947
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  ATCACCACATTTCAGACTTTTACGGGTTTTGTTTATCATGGGAGCAAAAC  949

seq1  AAAGCATCTGAAATTTGTATTAAGAATGGACCAACAAGACGTAGAGACT-  996
      ||||||||||||||||||||| ||| ||||||||| ||||||||||||| 
seq2  AAAGCATCTGAAATTTGTATT-AGATTGGACCAAC-AGACGTAGAGACTG  997

seq1  GTGAGCATCTGCCTCAATACAGAAGCAAATACTTGCAGCCAACCAATTGA  1046
      ||||||||||||||| |||||||||||||||||||||||||    |||||
seq2  GTGAGCATCTGCCTC-ATACAGAAGCAAATACTTGCAGCCA---CATTGA  1043

seq1  CTGAGCACAGTG-TCCACAATGGAGGAGTTAGAGAA  1081
      |||||||||||| ||||||||||| ||| |||||||
seq2  CTGAGCACAGTGTTCCACAATGGA-GAG-TAGAGAA  1077


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