BAC Information

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BAC

Clone NameB6Ng01-242N16
Chromosome15 (Build37)
Map Location 47,522,228 - 47,635,165
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242N16.bB6Ng01-242N16.g
ACCGA052389GA052390
length1,0861,115
definitionB6Ng01-242N16.b B6Ng01-242N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,634,085 - 47,635,165)(47,522,228 - 47,523,356)
sequence
gaattccaaaagagtagatttttacctaaatggtattctcttctgcaata
tgatataaattagtatgtaaagagccaagctttgtggaatgagaatatat
tttttgtataccagaaaatatcttgtgccacataaatatttgacatagat
ttgtacatgatttttctataagcataattccttaagaaattcatttttaa
tttatagttgaacaataaattattactgagtttcctctgccttgttggtt
cttttccttggttttgtattacatttagaagaaaacgttcatagttaaat
gagggattgtatctaggaatgttgatttaaacccgaagagtatcactagt
catgaaacggatatttgtagttacatgaacaacatatagtctgctatgta
ctttacctacctgcgacatcagccaatgcactagtccttttcacaacatc
tcatccacaaaatagtattgattttctttatgctgacatgccactgagaa
ttttgtgaacttggaacaaaaaattgccttcctatggatgtttgtagcct
acaccatggagatccatctcagattggccacagtcttcttgatacctcct
cttctggttaaataacattaagagctatattttatggatagtctttaata
ttttttacactgaataagtacttggttgcatttgtttgcttcaaataaac
ttctttccttcccaggaagcatacacatgttctcttgttaatagaattcc
aaagaacaattttagtcagtgcttactacacttgagaagcagctacaggc
atgttagtggctagctttctttgtttaatgaaatccaagccacaaaccat
tgatctcttcatctggtgattgggtttgtattccaattggctacaatcta
acatttcaccatatttgttttgttgttttttcacttttttttttcctggg
agtctgcagtaagttttctgtgaatttccctactttgacatgacgttgat
aataatagtaagtctattacaaagcaaacattgggattgttcacctttgc
agctttctatcattgattttatatactttaatatct

gaattccagccacagatcaggaggaaccattgtgtgcttaataagattcc
cctttttgagaggaaaaaaaaaaagattgttttatattcaggtattagaa
aataaagacagcctagaaaacaaatgaataaatcataaaaccaatagcct
atgttcaaatcaacagaacgggatttcagtgttgtgcttcccatgtctct
cctgcattagtcagacttcacagccattttttatggtgcgccagcacatt
gtgtaaacatacagaacagacacagagcactgtcaacccccaactatccc
agcctgtgtgtcacaataactgagacactaagacatttcgaggtcaagtt
aattaagtgaagtttgttattaaaaataaggtgaactcaaaacaaaattt
tttttggtgttttctttaatgaatcattgaggtggaagaggtggcacatg
cctttaatcccagcactcaggaaacagaggcaggtggatctttgcgagtt
tgaggtcagtgtggtctatagctagctctaagacagccaaggctacacaa
caaaacctgtcttgaaaaataataaataagtaaacaaatatataaatgaa
tgaacaaaaaacaagcaaatacatgaataaataattatttggacagagaa
aaacacatttctatctatgtcctatatctagtctatttctactgcatgtt
tattgctttatgctttactcctgattgtttaaattttaattataatttat
attgttaaaatagaactaataatgattccatgtaatctaggaataactaa
tgcataacaactcctattattctcaaggcatattatctttcagtgaatgg
tggctcttagtaatatggtgatattcaaagttagtgtcagccatttacaa
tggggtttatgagtttatattcacatgtcactacataacaatgtttttaa
ttttatcatctgccaacttccgtctgacccagtagtatattccagtaaag
tcatactgtgtgattgtgttacagtaattgagggggaaacatttctcaat
gaaatattctcagaaagtgaacgtttgtaatcattcattaccataacctt
tggtttgtagctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47634085_47635165
seq2: B6Ng01-242N16.b_44_1129 (reverse)

seq1  AGATATAAAGGTTATATAAAATCAATGATAGAAAGCTGC-AAGGTGAACA  49
      |||||| || | ||||||||||||||||||||||||||| ||||||||||
seq2  AGATATTAAAG-TATATAAAATCAATGATAGAAAGCTGCAAAGGTGAACA  49

seq1  AT-CCAATGTTTGCTTTGTAAATAGACTTACTATTATTATCAACGTCATT  98
      || |||||||||||||||| |||||||||||||||||||||||||||| |
seq2  ATCCCAATGTTTGCTTTGT-AATAGACTTACTATTATTATCAACGTCA-T  97

seq1  GTC-AAGTA-GGAAATTCACAGAAAACTTACTGCAGACT-CCAGG-AAAA  144
      ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||
seq2  GTCAAAGTAGGGAAATTCACAGAAAACTTACTGCAGACTCCCAGGAAAAA  147

seq1  AAAAAGTGAAAAAACAACAAAACAAATATGGTG-AATGTTAGATTGTAGC  193
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAGTGAAAAAACAACAAAACAAATATGGTGAAATGTTAGATTGTAGC  197

seq1  CAATTGGAATACAAA-CCAATCACCAGATGAAGAGATCAATGGTTTGTGG  242
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAATTGGAATACAAACCCAATCACCAGATGAAGAGATCAATGGTTTGTGG  247

seq1  CTTGGATTTCATTAAACAAAGAAAGCTAGCCACTAACATGCCTGTAGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTCATTAAACAAAGAAAGCTAGCCACTAACATGCCTGTAGCTG  297

seq1  CTTCTCAAGTGTAGTAAGCACTGACTAAAATTGTTCTTTGGAATTCTATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGTGTAGTAAGCACTGACTAAAATTGTTCTTTGGAATTCTATT  347

seq1  AACAAGAGAACATGTGTATGCTTCCTGGGAAGGAAAGAAGTTTATTTGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGAACATGTGTATGCTTCCTGGGAAGGAAAGAAGTTTATTTGAA  397

seq1  GCAAACAAATGCAACCAAGTACTTATTCAGTGTAAAAAATATTAAAGACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAATGCAACCAAGTACTTATTCAGTGTAAAAAATATTAAAGACT  447

seq1  ATCCATAAAATATAGCTCTTAATGTTATTTAACCAGAAGAGGAGGTATCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAAATATAGCTCTTAATGTTATTTAACCAGAAGAGGAGGTATCA  497

seq1  AGAAGACTGTGGCCAATCTGAGATGGATCTCCATGGTGTAGGCTACAAAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGTGGCCAATCTGAGATGGATCTCCATGGTGTAGGCTACAAAC  547

seq1  ATCCATAGGAAGGCAATTTTTTGTTCCAAGTTCACAAAATTCTCAGTGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAGGAAGGCAATTTTTTGTTCCAAGTTCACAAAATTCTCAGTGGC  597

seq1  ATGTCAGCATAAAGAAAATCAATACTATTTTGTGGATGAGATGTTGTGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCATAAAGAAAATCAATACTATTTTGTGGATGAGATGTTGTGAA  647

seq1  AAGGACTAGTGCATTGGCTGATGTCGCAGGTAGGTAAAGTACATAGCAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTAGTGCATTGGCTGATGTCGCAGGTAGGTAAAGTACATAGCAGA  697

seq1  CTATATGTTGTTCATGTAACTACAAATATCCGTTTCATGACTAGTGATAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTGTTCATGTAACTACAAATATCCGTTTCATGACTAGTGATAC  747

seq1  TCTTCGGGTTTAAATCAACATTCCTAGATACAATCCCTCATTTAACTATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGGTTTAAATCAACATTCCTAGATACAATCCCTCATTTAACTATG  797

seq1  AACGTTTTCTTCTAAATGTAATACAAAACCAAGGAAAAGAACCAACAAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTCTTCTAAATGTAATACAAAACCAAGGAAAAGAACCAACAAGG  847

seq1  CAGAGGAAACTCAGTAATAATTTATTGTTCAACTATAAATTAAAAATGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAACTCAGTAATAATTTATTGTTCAACTATAAATTAAAAATGAA  897

seq1  TTTCTTAAGGAATTATGCTTATAGAAAAATCATGTACAAATCTATGTCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGGAATTATGCTTATAGAAAAATCATGTACAAATCTATGTCAA  947

seq1  ATATTTATGTGGCACAAGATATTTTCTGGTATACAAAAAATATATTCTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGTGGCACAAGATATTTTCTGGTATACAAAAAATATATTCTCA  997

seq1  TTCCACAAAGCTTGGCTCTTTACATACTAATTTATATCATATTGCAGAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAAGCTTGGCTCTTTACATACTAATTTATATCATATTGCAGAAG  1047

seq1  AGAATACCATTTAGGTAAAAATCTACTCTTTTGGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCATTTAGGTAAAAATCTACTCTTTTGGAATTC  1086


seq1: chr15_47522228_47523356
seq2: B6Ng01-242N16.g_68_1182

seq1  GAATTCCAGCCACAGATCAGGAGGAACCATTGTGTGCTTAATAAGATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACAGATCAGGAGGAACCATTGTGTGCTTAATAAGATTCC  50

seq1  CCTTTTTGAGAGGAAAAAAAAAAAGATTGTTTTATATTCAGGTATTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAGAGGAAAAAAAAAAAGATTGTTTTATATTCAGGTATTAGAA  100

seq1  AATAAAGACAGCCTAGAAAACAAATGAATAAATCATAAAACCAATAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACAGCCTAGAAAACAAATGAATAAATCATAAAACCAATAGCCT  150

seq1  ATGTTCAAATCAACAGAACGGGATTTCAGTGTTGTGCTTCCCATGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAATCAACAGAACGGGATTTCAGTGTTGTGCTTCCCATGTCTCT  200

seq1  CCTGCATTAGTCAGACTTCACAGCCATTTTTTATGGTGCGCCAGCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTAGTCAGACTTCACAGCCATTTTTTATGGTGCGCCAGCACATT  250

seq1  GTGTAAACATACAGAACAGACACAGAGCACTGTCAACCCCCAACTATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACATACAGAACAGACACAGAGCACTGTCAACCCCCAACTATCCC  300

seq1  AGCCTGTGTGTCACAATAACTGAGACACTAAGACATTTCGAGGTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGTGTCACAATAACTGAGACACTAAGACATTTCGAGGTCAAGTT  350

seq1  AATTAAGTGAAGTTTGTTATTAAAAATAAGGTGAACTCAAAACAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGAAGTTTGTTATTAAAAATAAGGTGAACTCAAAACAAAATTT  400

seq1  TTTTTGGTGTTTTCTTTAATGAATCATTGAGGTGGAAGAGGTGGCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTGTTTTCTTTAATGAATCATTGAGGTGGAAGAGGTGGCACATG  450

seq1  CCTTTAATCCCAGCACTCAGGAAACAGAGGCAGGTGGATCTTTGCGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTCAGGAAACAGAGGCAGGTGGATCTTTGCGAGTT  500

seq1  TGAGGTCAGTGTGGTCTATAGCTAGCTCTAAGACAGCCAAGGCTACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGTGTGGTCTATAGCTAGCTCTAAGACAGCCAAGGCTACACAA  550

seq1  CAAAACCTGTCTTGAAAAATAATAAATAAGTAAACAAATATATAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTGTCTTGAAAAATAATAAATAAGTAAACAAATATATAAATGAA  600

seq1  TGAACAAAAAACAAGCAAATACATGAATAAATAATTATTTGGACAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAAACAAGCAAATACATGAATAAATAATTATTTGGACAGAGAA  650

seq1  AAACACATTTCTATCTATGTCCTATATCTAGTCTATTTCTACTGCATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTCTATCTATGTCCTATATCTAGTCTATTTCTACTGCATGTT  700

seq1  TATTGCTTTATGCTTTACTCCTGATTGTTTAAATTTTAATTATAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTATGCTTTACTCCTGATTGTTTAAATTTTAATTATAATTTAT  750

seq1  ATTGTTAAAATAGAACTAATAATGATTCCATGTAATCTAGGAATAACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAAATAGAACTAATAATGATTCCATGTAATCTAGGAATAACTAA  800

seq1  TGCATAACAACTCCTATTATTCTCAAGGCATATTATCTTTCAGTGAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAACAACTCCTATTATTCTCAAGGCATATTATCTTTCAGTGAATGG  850

seq1  TGGCTCTTAGTAATATGGTGATATTCAAAGTTAGTGTCAGCCATTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTAGTAATATGGTGATATTCAAAGTTAGTGTCAGCCATTTACAA  900

seq1  TGGGGTTTATGAGTTTATATTCAACATGTCACTACATAACAAATGTTTTT  950
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TGGGGTTTATGAGTTTATATTC-ACATGTCACTACATAAC-AATGTTTTT  948

seq1  AATTTTTATCATCTGCCAACTTCCGTCTGACCCAGTAGTATATTCCAAGT  1000
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AA-TTTTATCATCTGCCAACTTCCGTCTGACCCAGTAGTATATTCC-AGT  996

seq1  AAAGTTCATACTGTTGTGGATTGTGTTACAGTAATTGAGGGGGAAAACAT  1050
      |||| |||||||| ||| ||||||||||||||||||||||||| ||||||
seq2  AAAG-TCATACTG-TGT-GATTGTGTTACAGTAATTGAGGGGG-AAACAT  1042

seq1  TTCCTCAAATGAAATA-TCTCAGGAAAAGTG-ACCTTTGTATTCTATTCA  1098
      || ||| ||||||||| ||||||  |||||| || |||||| || |||||
seq2  TT-CTC-AATGAAATATTCTCAG--AAAGTGAACGTTTGTAATC-ATTCA  1087

seq1  TTACACATAACTTTTGTTTTGTAAAGCTTTT  1129
      |||| |||||| |||| |||||  |||||||
seq2  TTAC-CATAACCTTTGGTTTGT--AGCTTTT  1115


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