BAC Information

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BAC

Clone NameB6Ng01-244A11
Chromosome15 (Build37)
Map Location 101,525,356 - 101,526,416
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a
Downstream geneKrt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244A11.bB6Ng01-244A11.g
ACCGA053263GA053264
length1,1261,060
definitionB6Ng01-244A11.b B6Ng01-244A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttgaatcttg
tcgaatgctttttccgtatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgagtatttttgc
atcgatattcataagggaaattggtctgaagttccctatctttgttggat
ctttctgtggtttatgtatcagagtaattgtggcttcttagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
aattagatattctttgaaggtctggtagaactctgcactaaacccatctg
gtcctgggctttattttggcttggagactattaatgactgcttctatttc
tttaggggatatgggactgtttagatcgttaacttgatcctgatttaact
ttggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttttagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgctaa
ttaggatgttgtccctgtgccctctagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccttctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgctagtgtgtgctcttcttggaggcac
tcagagctattagtttccctcttaagaaatgctttcatgtgtccatagtt
ggggtatgttggggcttcatttcactaattcctaaaaagtccttaaatct
cttcttgatccctcctgacccaagcaatcattgagaaagaggtgtgttgt
ccacatttatacatgaagaagtgttg
gaattctcttggctttgcatattagtcttggttgccatggtgtggagcag
ttagagacactgaaatagccacacactaggaaagggggatgccacgtgct
tcatcaactggcttcctcaccttgcagccctgccacacccagggccccta
actcgggagagtagagaatcggagctccaaaccacgagggcacttgtttc
ccagaactgggtggaagcacattcttggtgaagaattgtgcaacagggtg
gagggagggcagctgtttccgttgtctgaggaaggtatctctctcctgtc
agacgctgagttagcacctttgaggggtagggagcttcctaccttcctgg
atgctggatcccagtgtgtctgagaactgcaattgaattcaaaacaggac
cttacacaggtactgctcagtgtgggagttagcctttcctcccacagcag
cgtctccagctacatcttctcagggaacaacacgcctagaattgttctgt
ttccttcacgcatggttcctaacatgtagactggaaaaagtgaatctcac
tcccctggaaagcaagctttcctttgaaatttggcttttcaagaagcgag
actagaaaaataaattgctatctgacttatgaaatcaccacacctgtaag
ggcacatctcagtgattcattgctggcctccaggcccctcgactttctct
gcacatcctactaacattttcagattcctgatccctaagaagtgtccaaa
tcgatggttaaaaaaatagttacaaaaaagcctgggaacctgtggtcctg
attatttggggttctaaggtttaagtgccaaggaaacatcttaacgcacc
agaggagggtgcctatgaatgtaactgtggaataaggatggcataaggaa
acattgtaacagaggacagtgtctgtgaatgagatgtggaatgactactt
tactcaagaattcagactgatggaaagcaaacagcgaggtagggaaggcg
ctgctgagcagagcacctggcgaggtcaggtgctggtctgcctctgtcct
caggaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101525356_101526416
seq2: B6Ng01-244A11.g_66_1125 (reverse)

seq1  ACTCTTCCCTGAGGACAGAGGCAGA-CAGCACCTGACCTCCGCAGGTGCT  49
      |||||| |||||||||||||||||| ||||||||||||||  ||||||||
seq2  ACTCTT-CCTGAGGACAGAGGCAGACCAGCACCTGACCTCGCCAGGTGCT  49

seq1  CTGCCCCAGCCGGCGCC-TCCCT-CCTCGCTGTTTGCTTTCCCATCAGTC  97
      ||| | ||| | ||||| ||||| |||||||||||||||| |||||||||
seq2  CTG-CTCAG-CAGCGCCTTCCCTACCTCGCTGTTTGCTTT-CCATCAGTC  96

seq1  TG-ATTCTTGAGTAAAGTAGTCATTCCACATTCTCATTCACAGACACTGT  146
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAATTCTTGAGTAAAGTAGTCATTCCACA-TCTCATTCACAGACACTGT  145

seq1  CCTCTGTTACAATGTTTCCTTATGCCATCCTTATTCCACAGTTACATTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTACAATGTTTCCTTATGCCATCCTTATTCCACAGTTACATTCA  195

seq1  TAGGCACCCTCCTCTGGTGCGTTAAGATGTTTCCTTGGCACTTAAACCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACCCTCCTCTGGTGCGTTAAGATGTTTCCTTGGCACTTAAACCTT  245

seq1  AGAACCCCAAATAATCAGGACCACAGGTTCCCAGGCTTTTTTGTAACTAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCCAAATAATCAGGACCACAGGTTCCCAGGCTTTTTTGTAACTAT  295

seq1  TTTTTTAACCATCGATTTGGACACTTCTTAGGGATCAGGAATCTGAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAACCATCGATTTGGACACTTCTTAGGGATCAGGAATCTGAAAAT  345

seq1  GTTAGTAGGATGTGCAGAGAAAGTCGAGGGGCCTGGAGGCCAGCAATGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAGGATGTGCAGAGAAAGTCGAGGGGCCTGGAGGCCAGCAATGAA  395

seq1  TCACTGAGATGTGCCCTTACAGGTGTGGTGATTTCATAAGTCAGATAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGATGTGCCCTTACAGGTGTGGTGATTTCATAAGTCAGATAGCA  445

seq1  ATTTATTTTTCTAGTCTCGCTTCTTGAAAAGCCAAATTTCAAAGGAAAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTCTAGTCTCGCTTCTTGAAAAGCCAAATTTCAAAGGAAAGC  495

seq1  TTGCTTTCCAGGGGAGTGAGATTCACTTTTTCCAGTCTACATGTTAGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCAGGGGAGTGAGATTCACTTTTTCCAGTCTACATGTTAGGAA  545

seq1  CCATGCGTGAAGGAAACAGAACAATTCTAGGCGTGTTGTTCCCTGAGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGTGAAGGAAACAGAACAATTCTAGGCGTGTTGTTCCCTGAGAAG  595

seq1  ATGTAGCTGGAGACGCTGCTGTGGGAGGAAAGGCTAACTCCCACACTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGGAGACGCTGCTGTGGGAGGAAAGGCTAACTCCCACACTGAG  645

seq1  CAGTACCTGTGTAAGGTCCTGTTTTGAATTCAATTGCAGTTCTCAGACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTGTGTAAGGTCCTGTTTTGAATTCAATTGCAGTTCTCAGACAC  695

seq1  ACTGGGATCCAGCATCCAGGAAGGTAGGAAGCTCCCTACCCCTCAAAGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATCCAGCATCCAGGAAGGTAGGAAGCTCCCTACCCCTCAAAGGT  745

seq1  GCTAACTCAGCGTCTGACAGGAGAGAGATACCTTCCTCAGACAACGGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCAGCGTCTGACAGGAGAGAGATACCTTCCTCAGACAACGGAAA  795

seq1  CAGCTGCCCTCCCTCCACCCTGTTGCACAATTCTTCACCAAGAATGTGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCCTCCCTCCACCCTGTTGCACAATTCTTCACCAAGAATGTGCT  845

seq1  TCCACCCAGTTCTGGGAAACAAGTGCCCTCGTGGTTTGGAGCTCCGATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAGTTCTGGGAAACAAGTGCCCTCGTGGTTTGGAGCTCCGATTC  895

seq1  TCTACTCTCCCGAGTTAGGGGCCCTGGGTGTGGCAGGGCTGCAAGGTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTCCCGAGTTAGGGGCCCTGGGTGTGGCAGGGCTGCAAGGTGAG  945

seq1  GAAGCCAGTTGATGAAGCACGTGGCATCCCCCTTTCCTAGTGTGTGGCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTTGATGAAGCACGTGGCATCCCCCTTTCCTAGTGTGTGGCTA  995

seq1  TTTCAGTGTCTCTAACTGCTCCACACCATGGCAACCAAGACTAATATGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTCTCTAACTGCTCCACACCATGGCAACCAAGACTAATATGCA  1045

seq1  AAGCCAAGAGAATTC  1061
      |||||||||||||||
seq2  AAGCCAAGAGAATTC  1060