BAC Information

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BAC

Clone NameB6Ng01-245O06
Chromosome15 (Build37)
Map Location 51,262,640 - 51,410,794
singlet/doubletdoublet
Overlap geneLOC100039662
Upstream geneTrps1, LOC100039644
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245O06.bB6Ng01-245O06.g
ACCGA054655GA054656
length6541,176
definitionB6Ng01-245O06.b B6Ng01-245O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,262,640 - 51,263,293)(51,409,636 - 51,410,794)
sequence
gaattctgaaaactcattccagagtttcttccagtaatacatcacgtctc
aagatcagagtactcacctcacaattttcccatatagccagagtacctgg
taagttctgggtaaagagaagtcctctgataaatatctgttgaagctggg
ttgactcgtggtgaatatgacaacctggggctggctgttgcctcaagagt
ttcctatgagaataattgcttctaaagtctattctaaagtttctattgcc
atgagaaaaagatatccaaaaatcctcaaggaactcgcacgaaaaatgga
actattgcaaaatgaaagtaaattcagactcatgaaaatgattaaacatc
tttagaacatttgtgggtttaaaattccgctttggttttaatcagtcttt
tcaccttagcataacacatacacacacacacacacacacacacacacaca
caccaacacacaaacatgcacacatgtacacacacaaatccccaacttta
gatttaattatccaagcaatccgttttacaaccaaagatctacattctac
aaagatttgaccagttccagaagatacctaattgtttggctggcttcttc
atttgtattttatttctcttgtgtgtgtgtgtgtgtgtgtgtgtgtatgt
gtgt

gaattcatttgggtttgcttatggaatcatgggtaaacggtcattattag
gagtgaaccctgtacagacataccatcaaaaaatgtgacctcagagtgga
tgatggtgtccccatgattcgatcaaaggagttcccctccagttaatgtt
aacctcccaatgtctatgtatactctagtacttcccaagacttctgtgta
gtgggccagaattacatccagctggaagggggcacaagtgtaagggaata
gctagaaagcctgttaggagcctaaggatcctctctccctctccttttta
tgagagaacggcagcaggcccagcttactgaaggtctctgcggggtgatc
acagctgctgtgatgaagacaataatggctggtatattgggacagagttc
acaacagggagacagtctgaagaccacaggatactgagactcaaattcag
gggataaaacacttagccctctaggctgcttggagccggggtgaactctg
actaggagctgtgatgccatctgtcaattgtacatgaagtatctgagaga
gaaggagaatcaagtttctttgtctaaaggcaaagaaaagtccaggccca
tctccccagccctgcctgcctgcttgggtaatattttgagcttaagcaag
aatttctatcttctctctataatccctagatcggtgtactagcttaatgc
aatttaacacaattccaaccttcgaaggaaaatgtctctaaaattatctg
gaacattaaataggtgaaaatagctaatacaattttgaaaaatgaaagta
atgaggggttcttctcacataatagagaatgcattctattctataacatg
gactatattatgtgaagtaaagggagagagcatgtggacaggtaaatggg
aaaatagatcattacaggaaacttaggtccacgttgtgatatataggaaa
cttaatcatgtcagtgcatacatcacaatgataggaaagaagattagttt
aattagtagataaattttgccatattattaaaaaaatatggaagttctta
gcaccttaccaatgtagcaaattcttttaaaaaaatgggagtgggtgcct
agttattgtagaatttaagatttaacctaccatcttaaagaatacaactt
tgtttacaacattccttttaggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51262640_51263293
seq2: B6Ng01-245O06.b_46_699

seq1  GAATTCTGAAAACTCATTCCAGAGTTTCTTCCAGTAATACATCACGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAACTCATTCCAGAGTTTCTTCCAGTAATACATCACGTCTC  50

seq1  AAGATCAGAGTACTCACCTCACAATTTTCCCATATAGCCAGAGTACCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGAGTACTCACCTCACAATTTTCCCATATAGCCAGAGTACCTGG  100

seq1  TAAGTTCTGGGTAAAGAGAAGTCCTCTGATAAATATCTGTTGAAGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTGGGTAAAGAGAAGTCCTCTGATAAATATCTGTTGAAGCTGGG  150

seq1  TTGACTCGTGGTGAATATGACAACCTGGGGCTGGCTGTTGCCTCAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCGTGGTGAATATGACAACCTGGGGCTGGCTGTTGCCTCAAGAGT  200

seq1  TTCCTATGAGAATAATTGCTTCTAAAGTCTATTCTAAAGTTTCTATTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGAGAATAATTGCTTCTAAAGTCTATTCTAAAGTTTCTATTGCC  250

seq1  ATGAGAAAAAGATATCCAAAAATCCTCAAGGAACTCGCACGAAAAATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAAGATATCCAAAAATCCTCAAGGAACTCGCACGAAAAATGGA  300

seq1  ACTATTGCAAAATGAAAGTAAATTCAGACTCATGAAAATGATTAAACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCAAAATGAAAGTAAATTCAGACTCATGAAAATGATTAAACATC  350

seq1  TTTAGAACATTTGTGGGTTTAAAATTCCGCTTTGGTTTTAATCAGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACATTTGTGGGTTTAAAATTCCGCTTTGGTTTTAATCAGTCTTT  400

seq1  TCACCTTAGCATAACACATACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAGCATAACACATACACACACACACACACACACACACACACACA  450

seq1  CACCAACACACAAACATGCACACATGTACACACACAAATCCCCAACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACACACAAACATGCACACATGTACACACACAAATCCCCAACTTTA  500

seq1  GATTTAATTATCCAAGCAATCCGTTTTACAACCAAAGATCTACATTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATTATCCAAGCAATCCGTTTTACAACCAAAGATCTACATTCTAC  550

seq1  AAAGATTTGACCAGTTCCAGAAGATACCTAATTGTTTGGCTGGCTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTGACCAGTTCCAGAAGATACCTAATTGTTTGGCTGGCTTCTTC  600

seq1  ATTTGTATTTTATTTCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTTTATTTCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  650

seq1  GTGT  654
      ||||
seq2  GTGT  654


seq1: chr15_51409636_51410794
seq2: B6Ng01-245O06.g_67_1242 (reverse)

seq1  AGTTCCTAA---GGATGTTGT-AACAAAGTTGTATCTTTTAGGAT-GTA-  44
      |||||||||   | ||||||| |||||||||||||  |||| ||| ||| 
seq2  AGTTCCTAAAAGGAATGTTGTAAACAAAGTTGTATTCTTTAAGATGGTAG  50

seq1  GTTTAATCT---AATCTACA--TACTAG-----CACACTCATTTTTTTAA  84
      ||| |||||   | ||||||   |||||     ||| | |||||||||||
seq2  GTTAAATCTTAAATTCTACAATAACTAGGCACCCACTCCCATTTTTTTAA  100

seq1  AGAATTTTGCTACA-TGGTAA-GTGCTAAGAACTTCAATA-TTTTTTAAT  131
      |  | ||||||||| |||||| |||||||||||||| ||| |||||||||
seq2  AAGAATTTGCTACATTGGTAAGGTGCTAAGAACTTCCATATTTTTTTAAT  150

seq1  -ATATGGCAAAATTTTATCTACTAATTAAACTATTCTTCTTTTCTTATCA  180
       ||||||||||| |||||||||||||||||||| ||||| |||| |||||
seq2  AATATGGCAAAA-TTTATCTACTAATTAAACTAATCTTC-TTTCCTATCA  198

seq1  TTGTGATGTATGCACTGACATGATTAAGTTTTCCTATATATCACAACGTG  230
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGTGATGTATGCACTGACATGATTAAG-TTTCCTATATATCACAACGTG  247

seq1  GACCTAAGTTTCCTGTAATGATCTATTTTCCCATTTACCTGTCCACATGC  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGTTTCCTGTAATGATCTATTTTCCCATTTACCTGTCCACATGC  297

seq1  TCTCTCCCTTTACTTCACATAATATAGTCCATGTTATAGAATAGAATGCA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTTTACTTCACATAATATAGTCCATGTTATAGAATAGAATGCA  347

seq1  TTCTCTATTATGTGAGAAGAACCCCTCATTACTTTCATTTTTCAAAATTG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTATGTGAGAAGAACCCCTCATTACTTTCATTTTTCAAAATTG  397

seq1  TATTAGCTATTTTCACCTATTTAATGTTCCAGATAATTTTAGAGACATTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTATTTTCACCTATTTAATGTTCCAGATAATTTTAGAGACATTT  447

seq1  TCCTTCGAAGGTTGGAATTGTGTTAAATTGCATTAAGCTAGTACACCGAT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGAAGGTTGGAATTGTGTTAAATTGCATTAAGCTAGTACACCGAT  497

seq1  CTAGGGATTATAGAGAGAAGATAGAAATTCTTGCTTAAGCTCAAAATATT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATTATAGAGAGAAGATAGAAATTCTTGCTTAAGCTCAAAATATT  547

seq1  ACCCAAGCAGGCAGGCAGGGCTGGGGAGATGGGCCTGGACTTTTCTTTGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCAGGCAGGCAGGGCTGGGGAGATGGGCCTGGACTTTTCTTTGC  597

seq1  CTTTAGACAAAGAAACTTGATTCTCCTTCTCTCTCAGATACTTCATGTAC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACAAAGAAACTTGATTCTCCTTCTCTCTCAGATACTTCATGTAC  647

seq1  AATTGACAGATGGCATCACAGCTCCTAGTCAGAGTTCACCCCGGCTCCAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACAGATGGCATCACAGCTCCTAGTCAGAGTTCACCCCGGCTCCAA  697

seq1  GCAGCCTAGAGGGCTAAGTGTTTTATCCCCTGAATTTGAGTCTCAGTATC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGAGGGCTAAGTGTTTTATCCCCTGAATTTGAGTCTCAGTATC  747

seq1  CTGTGGTCTTCAGACTGTCTCCCTGTTGTGAACTCTGTCCCAATATACCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTTCAGACTGTCTCCCTGTTGTGAACTCTGTCCCAATATACCA  797

seq1  GCCATTATTGTCTTCATCACAGCAGCTGTGATCACCCCGCAGAGACCTTC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATTGTCTTCATCACAGCAGCTGTGATCACCCCGCAGAGACCTTC  847

seq1  AGTAAGCTGGGCCTGCTGCCGTTCTCTCATAAAAAGGAGAGGGAGAGAGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTGGGCCTGCTGCCGTTCTCTCATAAAAAGGAGAGGGAGAGAGG  897

seq1  ATCCTTAGGCTCCTAACAGGCTTTCTAGCTATTCCCTTACACTTGTGCCC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGGCTCCTAACAGGCTTTCTAGCTATTCCCTTACACTTGTGCCC  947

seq1  CCTTCCAGCTGGATGTAATTCTGGCCCACTACACAGAAGTCTTGGGAAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCTGGATGTAATTCTGGCCCACTACACAGAAGTCTTGGGAAGT  997

seq1  ACTAGAGTATACATAGACATTGGGAGGTTAACATTAACTGGAGGGGAACT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTATACATAGACATTGGGAGGTTAACATTAACTGGAGGGGAACT  1047

seq1  CCTTTGATCGAATCATGGGGACACCATCATCCACTCTGAGGTCACATTTT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCGAATCATGGGGACACCATCATCCACTCTGAGGTCACATTTT  1097

seq1  TTGATGGTATGTCTGTACAGGGTTCACTCCTAATAATGACCGTTTACCCA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTATGTCTGTACAGGGTTCACTCCTAATAATGACCGTTTACCCA  1147

seq1  TGATTCCATAAGCAAACCCAAATGAATTC  1159
      |||||||||||||||||||||||||||||
seq2  TGATTCCATAAGCAAACCCAAATGAATTC  1176


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