BAC Information

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BAC

Clone NameB6Ng01-246B09
Chromosome15 (Build37)
Map Location 20,692,646 - 20,794,903
singlet/doubletdoublet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246B09.bB6Ng01-246B09.g
ACCGA054802GA054803
length980283
definitionB6Ng01-246B09.b B6Ng01-246B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,794,146 - 20,794,903)(20,692,646 - 20,692,926)
sequence
tggaagccagaaattggctttgaatcctagggaacaggagttacagatgt
ttattattcttcaggtgggtgatgggaatcaaacctggctccacttggag
atcagccagtgctcgtaagtgttgagtcatgtcttcaaccaagcaggtca
atgttttcttatttacataaaagaaaactggatggaaataaaaattctat
cccattgcatgagcacacatctgttttaattgatttctatatcatagtct
ttgaaaaccatcttctctagtgcattcaattgcactttgatagaaataaa
acaagtaagtatttctcaactgaaaaataaaaagtaaacaggcattgctt
attttctggggatgctttaacaaagtgttgcctgttaagtttcaaatcca
gagcaagtggctgagatgcatattcaacatatcaaagcagacctgaacaa
ggtatgctggaatacctggccctttacactgaattctttagccctatata
agccagatattttggttaccttcactatctctgcctctcttttgctggtt
ttataccttgccctgcttgctgctgttctttgctctctttcccttttaca
tctccctctccccacctggttcagggtcatgatcatcctgaactctcaca
gatatctctttctctggctatgcagtcccacatatctgtagtaaactttt
tcgcccaccatacctaggaaaagttacatccttttctttcctcttctttt
tatttcttttgttcattcactgcacactggtcagcttaaacaacaataaa
atgttactgtctcaaaagtgcaaagttcataatcaagacaggcaggtttg
gtcccttaggaaagttttggatgaaaggacctgctccaggcccattctta
tatgtgtgaaagttatctcttccatctagattttttaaatgatcttccaa
aatacctacaaaaaacttccttctttcata

attgggcaccattttgttgtagtaaatctccaacaaagaaagcacaactc
aattaatatgaatacatgctgtgtgcctggattgagcagatctaccacta
ccatcttccacatctatgagaccccttagaacttacggtttctccaggcc
atgtgctcctgtcccattttccttcattttccttctttctcctcctccgt
gttctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctttctgtcactctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20794146_20794903
seq2: B6Ng01-246B09.b_40_797 (reverse)

seq1  AAGAAATAAAAAGAAGAGGAAAGAAAAGGATGTAACTTTTCCTAGGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAAAAGAAGAGGAAAGAAAAGGATGTAACTTTTCCTAGGTATG  50

seq1  GTGGGCGAAAAAGTTTACTACAGATATGTGGGACTGCATAGCCAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGAAAAAGTTTACTACAGATATGTGGGACTGCATAGCCAGAGAAA  100

seq1  GAGATATCTGTGAGAGTTCAGGATGATCATGACCCTGAACCAGGTGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTGTGAGAGTTCAGGATGATCATGACCCTGAACCAGGTGGGGA  150

seq1  GAGGGAGATGTAAAAGGGAAAGAGAGCAAAGAACAGCAGCAAGCAGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATGTAAAAGGGAAAGAGAGCAAAGAACAGCAGCAAGCAGGGCA  200

seq1  AGGTATAAAACCAGCAAAAGAGAGGCAGAGATAGTGAAGGTAACCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAAAACCAGCAAAAGAGAGGCAGAGATAGTGAAGGTAACCAAAAT  250

seq1  ATCTGGCTTATATAGGGCTAAAGAATTCAGTGTAAAGGGCCAGGTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTATATAGGGCTAAAGAATTCAGTGTAAAGGGCCAGGTATTCC  300

seq1  AGCATACCTTGTTCAGGTCTGCTTTGATATGTTGAATATGCATCTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACCTTGTTCAGGTCTGCTTTGATATGTTGAATATGCATCTCAGCC  350

seq1  ACTTGCTCTGGATTTGAAACTTAACAGGCAACACTTTGTTAAAGCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCTGGATTTGAAACTTAACAGGCAACACTTTGTTAAAGCATCCC  400

seq1  CAGAAAATAAGCAATGCCTGTTTACTTTTTATTTTTCAGTTGAGAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAAGCAATGCCTGTTTACTTTTTATTTTTCAGTTGAGAAATAC  450

seq1  TTACTTGTTTTATTTCTATCAAAGTGCAATTGAATGCACTAGAGAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTTTTATTTCTATCAAAGTGCAATTGAATGCACTAGAGAAGATG  500

seq1  GTTTTCAAAGACTATGATATAGAAATCAATTAAAACAGATGTGTGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAGACTATGATATAGAAATCAATTAAAACAGATGTGTGCTCAT  550

seq1  GCAATGGGATAGAATTTTTATTTCCATCCAGTTTTCTTTTATGTAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGATAGAATTTTTATTTCCATCCAGTTTTCTTTTATGTAAATAA  600

seq1  GAAAACATTGACCTGCTTGGTTGAAGACATGACTCAACACTTACGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTGACCTGCTTGGTTGAAGACATGACTCAACACTTACGAGCAC  650

seq1  TGGCTGATCTCCAAGTGGAGCCAGGTTTGATTCCCATCACCCACCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATCTCCAAGTGGAGCCAGGTTTGATTCCCATCACCCACCTGAAG  700

seq1  AATAATAAACATCTGTAACTCCTGTTCCCTAGGATTCAAAGCCAATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAACATCTGTAACTCCTGTTCCCTAGGATTCAAAGCCAATTTCT  750

seq1  GGCTTCCA  758
      ||||||||
seq2  GGCTTCCA  758


seq1: chr15_20692646_20692926
seq2: B6Ng01-246B09.g_66_354

seq1  GAATTCATTGGGCACCATTTTGTTGTAGTAAATCTCCAACAAAGAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGCACCATTTTGTTGTAGTAAATCTCCAACAAAGAAAGCA  50

seq1  CAACTCAATTAATATGAATACATGCTGTGTGCCTGGATTGAGCAGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAATTAATATGAATACATGCTGTGTGCCTGGATTGAGCAGATCTA  100

seq1  CCACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTACGGTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTACGGTTTCTC  150

seq1  CAGGCCATGTGCTCCTGTCCCATTTTCCTTCATTTTCCTTCTTTCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATGTGCTCCTGTCCCATTTTCCTTCATTTTCCTTCTTTCTCCTC  200

seq1  CTCCGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCCCTCT--------CTCTCTCTCTCTCT  281
      |||||||||||| ||||        ||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTGTCACTCTCTCTCTCTCT  289


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