BAC Information

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BAC

Clone NameB6Ng01-246C17
Chromosome15 (Build37)
Map Location 77,353,034 - 77,354,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615
Downstream gene2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246C17.bB6Ng01-246C17.g
ACCGA054862GA054863
length1,168759
definitionB6Ng01-246C17.b B6Ng01-246C17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtggatccctatggggtacagggacagtagtgtgaaggtaag
aaagaatttttggttatatatgtattgcttttaatgttcacctagtggtc
aaactgctctctacactgtggaagcttaacttgtaattcctcccttggga
ctctaggatcatgtagaaacaaaatggattacaattttcctctaatggtc
tcaggataaaatctaacttcagcttctggtttcctgtttgcttcagatga
acccctaccgccccctcacccctccctcctccagtggacagggtagcagg
agggagcacacattgcagaagctgctggaaccttgtaagccctgcttctg
taagcacacctagctcagtggacctttgccctgtaccgccctctgcaggc
ggctgcgtagggaacaaattcagtatggctgtcagcttggaattcttcag
ttcaagttggggctgcactttgcaaagcactaaacaggtccaggccagag
agcatgagatgatcctgggccctccagctctccgtgtacggcctgatcct
ttgctggccaggttttacacaatagcacattgcaggggagtgggtgcaga
ctgactttatcagaagccaaacatattgaggtcagcagcgtcgaccaatt
tggggtcaagagccacatttttggcttggaaggactgctgaaaggatgaa
gaggcagaaattggcagctactgtctcactggtcttaaggatgtcaggtg
tgtgtctaatactgacagcacagggtcctgtcgtaaggttccatgtgcca
ctgaaatggcaggagcctgggccgaaagagcaggagggacatctaatggc
cattcttgatggctgcatctcaagattcctgcagtcaagccaagctggat
ccccacagtgacacactgagcctgtgttgtgtcagctgactggctccctg
agtaccagatatatgacttcccttcactgtgaacctgcacccaggatgtc
agggaactgagtctccatggctctgtgcattcacactgtctcccttcagt
cagcacctcccttggtcttcttgccatcttcagaccaaacttggttacat
gttgcaaccatgcttgtctggtctgacagggcacaggcatcctcaagtca
tcatgcaaggccaggact
gaattctggccacttccccaatgggcctggggtagcaggggaagggttta
ggagtgcccagcttttcaaggcattttaaaattagctggtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccactcatgaatccagata
attcctgggtgggtgtgcacatgtgacccacagcctgagctagccagact
ctcacccgggtgggaaccacccagcaccttcttcccgtgccccttttccc
tttggccctggggcagactcagctcttctgcggtgtccagcgacatcctg
caatgcccaagagctagaacctgtcatccctggactctgtgaggcccagg
gaccctggactgctccctctctacccccttggactggggtcctgtggctt
cccacagccagatgccctttcgggcagtatgaagaacccgtgtcagtccc
ccatgtctgcctgcccagagccctgtaactctggcgagactcgggtcatc
tctcctatcccttttatttccccatgagtggcgcctcacagggctatgca
gtggcaagggtcattatcgatgtctgtggctcgtgttatcactagagaaa
atggggatgtccctggtcagggtagccactgggaaccgcctagatgtcca
agggttgtgcatatatggctctgctcatcactgtgatgtagtgctttttt
atagctggtctcattctctcagtggtggcagcactctggagagcaagcac
tgttgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77353034_77354206
seq2: B6Ng01-246C17.b_48_1215 (reverse)

seq1  AGTCCTGGCCTTGCATGATGGC-TGAGGAATGCCCCTGTGCCCTGTCAGG  49
      |||||||||||||||||||| | ||||| |||  ||||||||||||||| 
seq2  AGTCCTGGCCTTGCATGATGACTTGAGG-ATG--CCTGTGCCCTGTCAGA  47

seq1  CCAGACAGGCATGGGTTGCAACCATGTA--CCAGTGTGGTCTGAAGATGG  97
      ||||||| |||| |||||||| ||||||  | ||| ||||||||||||||
seq2  CCAGACAAGCAT-GGTTGCAA-CATGTAACCAAGTTTGGTCTGAAGATGG  95

seq1  CA--GAGACCAAAGGGAGTGCCTGACTG-AGGGAGACAGTGTGAATGCAC  144
      ||   ||||| |||||||   ||||||| |||||||||||||||||||||
seq2  CAAGAAGACC-AAGGGAGGTGCTGACTGAAGGGAGACAGTGTGAATGCAC  144

seq1  AGGAGGCCATGGAGGACTCAGTTCCCTGACATCCTGGGTGCAGGTTCACA  194
      ||   |||||||| ||||||||||||||||||||||||||||||||||||
seq2  AG--AGCCATGGA-GACTCAGTTCCCTGACATCCTGGGTGCAGGTTCACA  191

seq1  GTGAAGGGAAGTCATATATCTGGTACTCAGGGAGCCAGTCAGCTGACACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGAAGTCATATATCTGGTACTCAGGGAGCCAGTCAGCTGACACA  241

seq1  ACACAGGCTCAGTGTGTCACTGTGGGGATCCAGCTTGGCTTGACTGCAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCTCAGTGTGTCACTGTGGGGATCCAGCTTGGCTTGACTGCAGG  291

seq1  AATCTTGAGATGCAGCCATCAAGAATGGCCATTAGATGTCCCTCCCTGCT  344
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATCTTGAGATGCAGCCATCAAGAATGGCCATTAGATGTCCCT-CCTGCT  340

seq1  CTTTCGGCCCAGGCTCCCTGCCATTTCAGTGGCACATGGAACCTTACGAC  394
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTCGGCCCAGGCT-CCTGCCATTTCAGTGGCACATGGAACCTTACGAC  389

seq1  AGGACCCTGTGCTGTCAGTATTAGACACACACCTGACATCCTTAAGACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTGTGCTGTCAGTATTAGACACACACCTGACATCCTTAAGACCA  439

seq1  GTGAGACAGTAGCTGCCAATTTCTGCCTCTTCATCCTTTCAGCAGTCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGTAGCTGCCAATTTCTGCCTCTTCATCCTTTCAGCAGTCCTT  489

seq1  CCAAGCCAAAAATGTGGCTCTTGACCCCAAATTGGTCGACGCTGCTGACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAAAAATGTGGCTCTTGACCCCAAATTGGTCGACGCTGCTGACC  539

seq1  TCAATATGTTTGGCTTCTGATAAAGTCAGTCTGCACCCACTCCCCTGCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTTTGGCTTCTGATAAAGTCAGTCTGCACCCACTCCCCTGCAA  589

seq1  TGTGCTATTGTGTAAAACCTGGCCAGCAAAGGATCAGGCCGTACACGGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTGTGTAAAACCTGGCCAGCAAAGGATCAGGCCGTACACGGAG  639

seq1  AGCTGGAGGGCCCAGGATCATCTCATGCTCTCTGGCCTGGACCTGTTTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGGCCCAGGATCATCTCATGCTCTCTGGCCTGGACCTGTTTAG  689

seq1  TGCTTTGCAAAGTGCAGCCCCAACTTGAACTGAAGAATTCCAAGCTGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAAAGTGCAGCCCCAACTTGAACTGAAGAATTCCAAGCTGACA  739

seq1  GCCATACTGAATTTGTTCCCTACGCAGCCGCCTGCAGAGGGCGGTACAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACTGAATTTGTTCCCTACGCAGCCGCCTGCAGAGGGCGGTACAGG  789

seq1  GCAAAGGTCCACTGAGCTAGGTGTGCTTACAGAAGCAGGGCTTACAAGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTCCACTGAGCTAGGTGTGCTTACAGAAGCAGGGCTTACAAGGT  839

seq1  TCCAGCAGCTTCTGCAATGTGTGCTCCCTCCTGCTACCCTGTCCACTGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGCTTCTGCAATGTGTGCTCCCTCCTGCTACCCTGTCCACTGGA  889

seq1  GGAGGGAGGGGTGAGGGGGCGGTAGGGGTTCATCTGAAGCAAACAGGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGGTGAGGGGGCGGTAGGGGTTCATCTGAAGCAAACAGGAAA  939

seq1  CCAGAAGCTGAAGTTAGATTTTATCCTGAGACCATTAGAGGAAAATTGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTGAAGTTAGATTTTATCCTGAGACCATTAGAGGAAAATTGTA  989

seq1  ATCCATTTTGTTTCTACATGATCCTAGAGTCCCAAGGGAGGAATTACAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTTGTTTCTACATGATCCTAGAGTCCCAAGGGAGGAATTACAAG  1039

seq1  TTAAGCTTCCACAGTGTAGAGAGCAGTTTGACCACTAGGTGAACATTAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTCCACAGTGTAGAGAGCAGTTTGACCACTAGGTGAACATTAAA  1089

seq1  AGCAATACATATATAACCAAAAATTCTTTCTTACCTTCACACTACTGTCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATACATATATAACCAAAAATTCTTTCTTACCTTCACACTACTGTCC  1139

seq1  CTGTACCCCATAGGGATCCACTTGAATTC  1173
      |||||||||||||||||||||||||||||
seq2  CTGTACCCCATAGGGATCCACTTGAATTC  1168