BAC Information

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BAC

Clone NameB6Ng01-246C20
Chromosome15 (Build37)
Map Location 5,857,710 - 5,984,186
singlet/doubletdoublet
Overlap geneLOC100039358
Upstream gene4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246C20.bB6Ng01-246C20.g
ACCGA054868GA054869
length1,1311,173
definitionB6Ng01-246C20.b B6Ng01-246C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,983,056 - 5,984,186)(5,857,710 - 5,858,834)
sequence
gaattctaaggttaataccaaaacactagagactttcacaacgctatctc
ttgtgaggcaagagcacagcttctgccttcttatttgcccacatcttgcc
tttagctggctttggatccctacaaaagttcactttgtgataacatgaag
taattaactatcatgatttttttgtgtgccattttctggtgtatgtgtgt
gatgaggattttgccttttagattcccatatttcattcttggcctttctt
gcaacattgttgttattagaaatgttagaggaatgaaaagcagctgtccg
tatattataaaaggatattcagtattagcctctctggcttgttatcagtc
aacattcatagttgatttctgtaggggatttagtttctttgctttaaata
tttcttgtaaataactaagttatgagcttatgtatctaacagaagttcta
aataaaacttagagttaatgttgttatttaaaataactatctcttctgct
agatgacaggacaggggagaaaaatgtatggatactcccacgagagaata
attgacatatttctggaaatttacttgtctgatctctctttagattctac
accaattgctagtatgttttaaaagagagaaataaatctaattttgagta
taaaatatatttcaaaatattttttgagaatcacctattctttttcatat
gtataatttagacaattgtgtatataaacatatatttacatatttgtata
tatagtacaacataaggaaaatagaataggaaaagctaaattaatttaat
gagagtggattgaatgcaagtagtatttaggagttacaaacatgaacata
atccaaattgtttttctagttctgttggtctgttagatttttctggtttt
ggttatgggataagtgcataaatataaaaagatacagaaatataaatttg
atgtttactttcacagatttcagatgagtgccttattctggcaacataga
ggttcattcagttgtagagatactgggttcaagttaatttgggttgtgtt
gaccgctttcttttttgggaaagttattttaataataaagctttataaac
gacacatatttgaaggtttgtttcctcagtt
gaattccctcgcacagagcaagaatatccacttaggtggcttttggtcat
cccagtacctcaatgcaactcttagatctctcaggatatcttgcttcact
agtcttgctgtcattgagatgtgataatattgggcaggactactgatagc
ttctctcccttgcaggttgtgtggctactgctcatactaagaactagaac
acacagaggggggcttcctcataacgtccaagtcaatgcctccaagtcct
gtgcctgaattatgtggtttcttaactcttgtatttctgaaaggcaccaa
gggtcacaagagcctattttgtttgagagttctcctgtactcccctgacc
agcaactcaaatggaagtttttttatgcttagcactgagtatttttgtta
gattgtctatgctgttcttaggagcattgtcacctcaagtggcataactt
caattaagccattaaaatcatctctcatctattttttccaatttcccttt
tcctgaaaactgttgtactattcatcctgtcatgggtgctcatcaactca
cctccactgtatggtcccttagcactatccaggtatctgtggtcagtcca
gttcttaaccagtgacttttcaagattcttaaatttaccatcttctgact
aatgaaactttcattatgttagctacttatgatatatatatatatatata
tatatatatatatatatatgcatttattttaacctttgtaatgaaacttg
gagtttctttgactgggcccacgacctattcatttttatagctaacccca
tgccctttccccccccccccccgctttctgtatagagctgaatgaaagaa
acacagagaagaaaaagatgtggcgggagacaaggatgtgtttgcagagt
taaaatgggcttgcagcaggcagagcatgaaggcctgagaacgttactgt
tgtttagctccagaaatgagagcggtgatagaacaacagaattctggaag
catgaacattctatgattaaaaatgcccattgggggagcattggaaaagt
ggaaaccgcatcccataggggaacagagctgtctatcagcatcttataat
ttattgttaaaagtgtcacatagcatcggagaagtgtaaggtgatgtaca
tgtagagcatggtctacagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5983056_5984186
seq2: B6Ng01-246C20.b_43_1173 (reverse)

seq1  AACTGAGAAACAAAACCTATCAAATATGTTTTTTGTTTTTAATAAGCTTT  50
      ||||||| ||  |||||| |||||||||  | | |||| ||  |||||||
seq2  AACTGAGGAAACAAACCT-TCAAATATG--TGTCGTTTATA--AAGCTTT  45

seq1  ATTA-TAAAATAACTTT-CCAAAAAAGAAAGC-GTC-ACAC-ACCCAAAT  95
      |||| |||||||||||| |||||||||||||| ||| |||| ||||||||
seq2  ATTATTAAAATAACTTTCCCAAAAAAGAAAGCGGTCAACACAACCCAAAT  95

seq1  TAACTTGAA-CCAGTATCTCTACAACTGAATGAACCTCTATGTTGCCAGA  144
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGAACCCAGTATCTCTACAACTGAATGAACCTCTATGTTGCCAGA  145

seq1  ATAAGGCACTCATCTGAAATCTGTGAAAGTTAACATCAAATTTTATATTT  194
      |||||||||||||||||||||||||||||| ||||||||| |||||| ||
seq2  ATAAGGCACTCATCTGAAATCTGTGAAAGTAAACATCAAA-TTTATA-TT  193

seq1  TCTGTATCTTTTATAT-TTTATGCACTTAT-CCATAACCAAAACCAGAAA  242
      |||||||||||| ||| ||||||||||||| |||||||||||||||||||
seq2  TCTGTATCTTTT-TATATTTATGCACTTATCCCATAACCAAAACCAGAAA  242

seq1  AATCTAACAGACCAACAGAACTAGAAAAACAATTTGGATTATGTTCATGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAACAGACCAACAGAACTAGAAAAACAATTTGGATTATGTTCATGT  292

seq1  TTGTAACTCCTAAATACTACTTGCATTCAATCCACTCTCATTAAATTAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTCCTAAATACTACTTGCATTCAATCCACTCTCATTAAATTAAT  342

seq1  TTAGCTTTTCCTATTCTATTTTCCTTATGTTGTACTATATATACAAATAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTCCTATTCTATTTTCCTTATGTTGTACTATATATACAAATAT  392

seq1  GTAAATATATGTTTATATACACAATTGTCTAAATTATACATATGAAAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATATGTTTATATACACAATTGTCTAAATTATACATATGAAAAAG  442

seq1  AATAGGTGATTCTCAAAAAATATTTTGAAATATATTTTATACTCAAAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGATTCTCAAAAAATATTTTGAAATATATTTTATACTCAAAATT  492

seq1  AGATTTATTTCTCTCTTTTAAAACATACTAGCAATTGGTGTAGAATCTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTCTCTCTTTTAAAACATACTAGCAATTGGTGTAGAATCTAA  542

seq1  AGAGAGATCAGACAAGTAAATTTCCAGAAATATGTCAATTATTCTCTCGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATCAGACAAGTAAATTTCCAGAAATATGTCAATTATTCTCTCGT  592

seq1  GGGAGTATCCATACATTTTTCTCCCCTGTCCTGTCATCTAGCAGAAGAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATCCATACATTTTTCTCCCCTGTCCTGTCATCTAGCAGAAGAGA  642

seq1  TAGTTATTTTAAATAACAACATTAACTCTAAGTTTTATTTAGAACTTCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTTAAATAACAACATTAACTCTAAGTTTTATTTAGAACTTCTG  692

seq1  TTAGATACATAAGCTCATAACTTAGTTATTTACAAGAAATATTTAAAGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATACATAAGCTCATAACTTAGTTATTTACAAGAAATATTTAAAGCA  742

seq1  AAGAAACTAAATCCCCTACAGAAATCAACTATGAATGTTGACTGATAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTAAATCCCCTACAGAAATCAACTATGAATGTTGACTGATAACA  792

seq1  AGCCAGAGAGGCTAATACTGAATATCCTTTTATAATATACGGACAGCTGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGAGGCTAATACTGAATATCCTTTTATAATATACGGACAGCTGC  842

seq1  TTTTCATTCCTCTAACATTTCTAATAACAACAATGTTGCAAGAAAGGCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCCTCTAACATTTCTAATAACAACAATGTTGCAAGAAAGGCCA  892

seq1  AGAATGAAATATGGGAATCTAAAAGGCAAAATCCTCATCACACACATACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAATATGGGAATCTAAAAGGCAAAATCCTCATCACACACATACA  942

seq1  CCAGAAAATGGCACACAAAAAAATCATGATAGTTAATTACTTCATGTTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATGGCACACAAAAAAATCATGATAGTTAATTACTTCATGTTAT  992

seq1  CACAAAGTGAACTTTTGTAGGGATCCAAAGCCAGCTAAAGGCAAGATGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTGAACTTTTGTAGGGATCCAAAGCCAGCTAAAGGCAAGATGTG  1042

seq1  GGCAAATAAGAAGGCAGAAGCTGTGCTCTTGCCTCACAAGAGATAGCGTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATAAGAAGGCAGAAGCTGTGCTCTTGCCTCACAAGAGATAGCGTT  1092

seq1  GTGAAAGTCTCTAGTGTTTTGGTATTAACCTTAGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTCTCTAGTGTTTTGGTATTAACCTTAGAATTC  1131

seq1: chr15_5857710_5858834
seq2: B6Ng01-246C20.g_67_1239

seq1  GAATTCCCTCGCACAGAGCAAGAATATCCACTTAGGTGGCTTTTGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCGCACAGAGCAAGAATATCCACTTAGGTGGCTTTTGGTCAT  50

seq1  CCCAGTACCTCAATGCAACTCTTAGATCTCTCAGGATATCTTGCTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACCTCAATGCAACTCTTAGATCTCTCAGGATATCTTGCTTCACT  100

seq1  AGTCTTGCTGTCATTGAGATGTGATAATATTGGGCAGGACTACTGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCTGTCATTGAGATGTGATAATATTGGGCAGGACTACTGATAGC  150

seq1  TTCTCTCCCTTGCAGGTTGTGTGGCTACTGCTCATACTAAGAACTAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCTTGCAGGTTGTGTGGCTACTGCTCATACTAAGAACTAGAAC  200

seq1  ACACAGAGGGGGGCTTCCTCATAACGTCCAAGTCAATGCCTCCAAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGGGGGCTTCCTCATAACGTCCAAGTCAATGCCTCCAAGTCCT  250

seq1  GTGCCTGAATTATGTGGTTTCTTAACTCTTGTATTTCTGAAAGGCACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAATTATGTGGTTTCTTAACTCTTGTATTTCTGAAAGGCACCAA  300

seq1  GGGTCACAAGAGCCTATTTTGTTTGAGAGTTCTCCTGTACTCCCCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAAGAGCCTATTTTGTTTGAGAGTTCTCCTGTACTCCCCTGACC  350

seq1  AGCAACTCAAATGGAAGTTTTTTTATGCTTAGCACTGAGTATTTTTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCAAATGGAAGTTTTTTTATGCTTAGCACTGAGTATTTTTGTTA  400

seq1  GATTGTCTATGCTGTTCTTAGGAGCATTGTCACCTCAAGTGGCATAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCTATGCTGTTCTTAGGAGCATTGTCACCTCAAGTGGCATAACTT  450

seq1  CAATTAAGCCATTAAAATCATCTCTCATCTATTTTTTCCAATTTCCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGCCATTAAAATCATCTCTCATCTATTTTTTCCAATTTCCCTTT  500

seq1  TCCTGAAAACTGTTGTACTATTCATCCTGTCATGGGTGCTCATCAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAACTGTTGTACTATTCATCCTGTCATGGGTGCTCATCAACTCA  550

seq1  CCTCCACTGTATGGTCCCTTAGCACTATCCAGGTATCTGTGGTCAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTGTATGGTCCCTTAGCACTATCCAGGTATCTGTGGTCAGTCCA  600

seq1  GTTCTTAACCAGTGACTTTTCAAGATTCTTAAATTTACCATCTTCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAACCAGTGACTTTTCAAGATTCTTAAATTTACCATCTTCTGACT  650

seq1  AATGAAACTTTCATTATGTTAGCTACTTATGATATATATATATATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTTTCATTATGTTAGCTACTTATGATATATATATATATATATA  700

seq1  TATATATATATATATATATGCA-TTATTTTAACCTTTGTAATGAAACTTG  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATATATATATATATATATGCATTTATTTTAACCTTTGTAATGAAACTTG  750

seq1  GAG-TTCTTTGACTGGGCCCACGACCTA-TCATTTTTATAGCTAACCCCA  797
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGTTTCTTTGACTGGGCCCACGACCTATTCATTTTTATAGCTAACCCCA  800

seq1  TGCCCTT--CCCCCCCCCCCCCGC-TTCTGTATAGAGCTGAATGAA--GA  842
      |||||||  ||||||||||||||| |||||||||||||||||||||   |
seq2  TGCCCTTTCCCCCCCCCCCCCCGCTTTCTGTATAGAGCTGAATGAAAGAA  850

seq1  ACACAGAGAAGAAAAAGATG-GGCGGGAGAC-AGGA-GTGTTTGCAGAGT  889
      |||||||||||||||||||| |||||||||| |||| |||||||||||||
seq2  ACACAGAGAAGAAAAAGATGTGGCGGGAGACAAGGATGTGTTTGCAGAGT  900

seq1  TAAGAT-GGCTTGCAGCAGGCAGAGCATG-AGGCCTGAGACGTTTACTGT  937
      ||| || |||||||||||||||||||||| ||||||||||   |||||||
seq2  TAAAATGGGCTTGCAGCAGGCAGAGCATGAAGGCCTGAGAACGTTACTGT  950

seq1  TG-TTAGCTTCAG-AATGAGAGCGGTGATAGAACAACAG-ATTCT-GAAG  983
      || |||||| ||| ||||||||||||||||||||||||| ||||| ||||
seq2  TGTTTAGCTCCAGAAATGAGAGCGGTGATAGAACAACAGAATTCTGGAAG  1000

seq1  CATGGACA-TCTATGATTAAAAATGCCCATT-GTGGAGCATT-GAAAAGT  1030
      |||| ||| |||||||||||||||||||||| | |||||||| |||||||
seq2  CATGAACATTCTATGATTAAAAATGCCCATTGGGGGAGCATTGGAAAAGT  1050

seq1  GGAAA-CGCA-CCCATAGGGAACTAGACCTG-CTATCAGCATCTTATAAT  1077
      ||||| |||| ||||||||| |  ||| ||| ||||||||||||||||||
seq2  GGAAACCGCATCCCATAGGGGAACAGAGCTGTCTATCAGCATCTTATAAT  1100

seq1  TTA-TGT--AAAGTGTCAC-TAGCA-GTGAG-AGTGGAAGGTGATG----  1117
      ||| |||  |||||||||| |||||   ||| |||| |||||||||    
seq2  TTATTGTTAAAAGTGTCACATAGCATCGGAGAAGTGTAAGGTGATGTACA  1150

seq1  ---------------ACAGAGAG  1125
                     ||||||||
seq2  TGTAGAGCATGGTCTACAGAGAG  1173