BAC Information

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BAC

Clone NameB6Ng01-246G23
Chromosome15 (Build37)
Map Location 44,597,187 - 44,754,998
singlet/doubletdoublet
Overlap gene5730410E15Rik, A930017M01Rik
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9
Downstream geneEG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246G23.bB6Ng01-246G23.g
ACCGA055050GA055051
length9121,177
definitionB6Ng01-246G23.b B6Ng01-246G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,597,187 - 44,598,102)(44,753,810 - 44,754,998)
sequence
gaattcacatcttaatactacaaacctctccacctccataaactatggtg
aatgaacaaaatcgcaaaagaaactttgtgattctttctttgttccatta
aagtaagcctagacaaagcattttagcacatctatttcctgttataagaa
acatttggttagttaaaaaacaatagtattaataaggaatagtgtggatt
ttagtcattttgcttgtatatatatattttaatggcaaaataaattgata
aaggaaatgtatctagcagaggctagagtagattctttcctgtacttggt
atatgtatgagaatgtcaactttagtataaaattaattatttcatatcac
agaggctgagaggatgtagcatgctgcttaaactctcttagatgtatttc
gaaggtgtacatttcatgcaaacttcctcaaccttggttatttgctttaa
gaaaagccttaaagagccattattctaagtgctgatattaaagctgtcat
ttgttgataaacactatgcaaggttaaacaaatgctcacccatctaacac
ttaagggttccttgaggtgaggttacaacccacatctgataaggaaaagg
agactccttgtgctaaagttgcttgtagaaaatgatgactccagtaaaag
gaaacttctctttatacaatttgaatgccaaaattcaagttcattctggg
aggtttcctgattccagaggactctgagtgagacctgccctgattccaca
ggcctttggtttcacggaggctaatgggtttttttttttttttgttgttt
gtttgtttgtttttgtttggcaaggcagcagaatttcaccaagagaagaa
agtggaaggagaaggactaggatgaggaagaagaaaaaggatggtggtgg
tgggtggtggtg
gaattcaaataagaaaatatctttgttctctacataattaccaacttcag
cttctagcctccagtgatttttagaaaaaaaatcaggcattagtatagag
aacgtactttccactttaaaagaattatcaagtctccatactgcttattt
taatgttcccttgggaactgaaatgtattggggactttccaaaatctcac
ttagttgacagtcagtacaaatctgctctcttaagtggagattcaggata
tgatcttccataattgaagttctatagccaaggaatatgaacaaagaact
tatgtttgatgatccaatattatactcaccaagaagacattcctacttag
aaattttctaactaaatgaaatgaagtaaaaatggaacctaacatttctg
aactgtgctcttttatgacattttggggtaaacctgcttttcttatagca
gctcatatagtcttatttagtttgactgtgacagcattagatttaattca
caattgcaaatacacaatttatgaagagaaaagttttattttgactcatg
gctacataaatttccatttgaattaccttggttctcagtcttcctaatac
tatgactctttaatacatttcctcatgttatggtaacccccaaccataaa
attatttctttgctacatcataactgctgtttgggattataatgtaaata
tctgatatacaagatatctggtattcaatttccaaagaagttgtaaccca
caggttgagaaatgctgggttagaggctttgcttaaggccgattgcatat
aatgcaagaaaaacatggtgggtgaccaactggggatccatcccatttac
aaccaccaaacccagacactactttcatatgccagaaagattttctgaca
ggaccctggccatagctttctcttctgagttatgccaatgcctggcaaat
acagaaatggatgttcccagtcatctatatagacacaggctcctaatgaa
agagctatggaaagtacccaaggagctaaaggggtctgcactctatagag
gaacataggataaactacagttactccccagaagtggtgtctcctaggtt
gccatatgtagccgaagatgcttatcttggcatcattggagtaggtcctt
ggtattgcaactcttatacctggtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44597187_44598102
seq2: B6Ng01-246G23.b_49_960

seq1  GAATTCACATCTTAATACTACAAACCTCTCCACCTCCATAAACTATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTTAATACTACAAACCTCTCCACCTCCATAAACTATGGTG  50

seq1  AATGAACAAAATCGCAAAAGAAACTTTGTGATTCTTTCTTTGTTCCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAAATCGCAAAAGAAACTTTGTGATTCTTTCTTTGTTCCATTA  100

seq1  AAGTAAGCCTAGACAAAGCATTTTAGCACATCTATTTCCTGTTATAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCCTAGACAAAGCATTTTAGCACATCTATTTCCTGTTATAAGAA  150

seq1  ACATTTGGTTAGTTAAAAAACAATAGTATTAATAAGGAATAGTGTGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTTAGTTAAAAAACAATAGTATTAATAAGGAATAGTGTGGATT  200

seq1  TTAGTCATTTTGCTTGTATATATATATTTTAATGGCAAAATAAATTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTTTGCTTGTATATATATATTTTAATGGCAAAATAAATTGATA  250

seq1  AAGGAAATGTATCTAGCAGAGGCTAGAGTAGATTCTTTCCTGTACTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGTATCTAGCAGAGGCTAGAGTAGATTCTTTCCTGTACTTGGT  300

seq1  ATATGTATGAGAATGTCAACTTTAGTATAAAATTAATTATTTCATATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGAGAATGTCAACTTTAGTATAAAATTAATTATTTCATATCAC  350

seq1  AGAGGCTGAGAGGATGTAGCATGCTGCTTAAACTCTCTTAGATGTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAGAGGATGTAGCATGCTGCTTAAACTCTCTTAGATGTATTTC  400

seq1  GAAGGTGTACATTTCATGCAAACTTCCTCAACCTTGGTTATTTGCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTACATTTCATGCAAACTTCCTCAACCTTGGTTATTTGCTTTAA  450

seq1  GAAAAGCCTTAAAGAGCCATTATTCTAAGTGCTGATATTAAAGCTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTTAAAGAGCCATTATTCTAAGTGCTGATATTAAAGCTGTCAT  500

seq1  TTGTTGATAAACACTATGCAAGGTTAAACAAATGCTCACCCATCTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATAAACACTATGCAAGGTTAAACAAATGCTCACCCATCTAACAC  550

seq1  TTAAGGGTTCCTTGAGGTGAGGTTACAACCCACATCTGATAAGGAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTTCCTTGAGGTGAGGTTACAACCCACATCTGATAAGGAAAAGG  600

seq1  AGACTCCTTGTGCTAAAGTTGCTTGTAGAAAATGATGACTCCAGTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTTGTGCTAAAGTTGCTTGTAGAAAATGATGACTCCAGTAAAAG  650

seq1  GAAACTTCTCTTTATACAATTTGAATGCCAAAATTCAAGTTCATTCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCTCTTTATACAATTTGAATGCCAAAATTCAAGTTCATTCTGGG  700

seq1  AGGTTTCCTGATTCCAGAGGACTCTGAGTGAGACCTGCCCTGATTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCTGATTCCAGAGGACTCTGAGTGAGACCTGCCCTGATTCCACA  750

seq1  GGCCTTTGGTTTCACGGAGGCTAATGGGTTTTTTTTTTTTTTGTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GGCCTTTGGTTTCACGGAGGCTAATGGGTTTTTTTTTTTTTTTGTTGTTT  800

seq1  GTTTTGTTTTGTTTTTTTGTTTGGCAAGGCAGCAGAATTTCACCAAGAGA  850
      | ||||||   | |||||||||||||||||||||||||||||||||||| 
seq2  G-TTTGTT---TGTTTTTGTTTGGCAAGGCAGCAGAATTTCACCAAGAG-  845

seq1  AAGAAAGTGGAAGGAGAAGGACCAGGATGAGGAAGAAGAAAAAGGATGGT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAAAGTGGAAGGAGAAGGACTAGGATGAGGAAGAAGAAAAAGGATGGT  895

seq1  GGTGGT-GGTGGTGGTG  916
      |||||| ||||||||||
seq2  GGTGGTGGGTGGTGGTG  912

seq1: chr15_44753810_44754998
seq2: B6Ng01-246G23.g_68_1244 (reverse)

seq1  TGTACCAGGGTATATGATTTTTGCAATACCAAGGGCCTTTCCTCCCATTG  50
      ||||||| |||||| ||   |||||||||||||| ||  | || ||| ||
seq2  TGTACCA-GGTATAAGA--GTTGCAATACCAAGGACC--TACT-CCAATG  44

seq1  ATGGCCAAG-TAGGCCATCCTCTGCTACATAT-GCAA-CTA-GAGACACA  96
      || |||||| || | |||| || ||||||||| |||| ||| ||||||| 
seq2  AT-GCCAAGATAAG-CATCTTCGGCTACATATGGCAACCTAGGAGACACC  92

seq1  AC-TCTGGGGAGT-ACTGGTTAGTTTATACTATTGTTCCTCCTATAGAGT  144
      || |||||||||| ||||  |||||||| ||| ||||||| |||||||| 
seq2  ACTTCTGGGGAGTAACTG--TAGTTTATCCTA-TGTTCCT-CTATAGAG-  137

seq1  TGCAGACCCCTTTAGCTCCTTGGGTACTTTCCATAGCTCTTTCATTAGGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCAGACCCCTTTAGCTCCTTGGGTACTTTCCATAGCTCTTTCATTAGGA  187

seq1  GCCCTGTGTTCCTTATAATAGATGACTGGGAACATCCATTTCTGTATTTG  244
      | |||||||    ||| |||||||||||||||||||||||||||||||||
seq2  G-CCTGTGT---CTAT-ATAGATGACTGGGAACATCCATTTCTGTATTTG  232

seq1  CCAGGCATTGGCATAAACTCAGAAGAGAAAGCTAT-GCCAGGGTCCTGTC  293
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  CCAGGCATTGGCAT-AACTCAGAAGAGAAAGCTATGGCCAGGGTCCTGTC  281

seq1  AGGAAAATCTTTCTGGCATATG-AAGTAGTGTCTGGGTTTGGTGGTTGTA  342
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  A-GAAAATCTTTCTGGCATATGAAAGTAGTGTCTGGGTTTGGTGGTTGTA  330

seq1  AATGGGATGGATCCCCAGTTGGTCACCCACCATGTTTTTCTTGCATTATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATGGATCCCCAGTTGGTCACCCACCATGTTTTTCTTGCATTATA  380

seq1  TGCAATCGGCCTTAAGCAAAGCCTCTAACCCAGCATTTCTCAACCTGTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCGGCCTTAAGCAAAGCCTCTAACCCAGCATTTCTCAACCTGTGG  430

seq1  GTTACAACTTCTTTGGAAATTGAATACCAGATATCTTGTATATCAGATAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACTTCTTTGGAAATTGAATACCAGATATCTTGTATATCAGATAT  480

seq1  TTACATTATAATCCCAAACAGCAGTTATGATGTAGCAAAGAAATAATTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATAATCCCAAACAGCAGTTATGATGTAGCAAAGAAATAATTTT  530

seq1  ATGGTTGGGGGTTACCATAACATGAGGAAATGTATTAAAGAGTCATAGTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGGGGTTACCATAACATGAGGAAATGTATTAAAGAGTCATAGTA  580

seq1  TTAGGAAGACTGAGAACCAAGGTAATTCAAATGGAAATTTATGTAGCCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGACTGAGAACCAAGGTAATTCAAATGGAAATTTATGTAGCCAT  630

seq1  GAGTCAAAATAAAACTTTTCTCTTCATAAATTGTGTATTTGCAATTGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAATAAAACTTTTCTCTTCATAAATTGTGTATTTGCAATTGTGA  680

seq1  ATTAAATCTAATGCTGTCACAGTCAAACTAAATAAGACTATATGAGCTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTAATGCTGTCACAGTCAAACTAAATAAGACTATATGAGCTGC  730

seq1  TATAAGAAAAGCAGGTTTACCCCAAAATGTCATAAAAGAGCACAGTTCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAAAGCAGGTTTACCCCAAAATGTCATAAAAGAGCACAGTTCAG  780

seq1  AAATGTTAGGTTCCATTTTTACTTCATTTCATTTAGTTAGAAAATTTCTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGGTTCCATTTTTACTTCATTTCATTTAGTTAGAAAATTTCTA  830

seq1  AGTAGGAATGTCTTCTTGGTGAGTATAATATTGGATCATCAAACATAAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATGTCTTCTTGGTGAGTATAATATTGGATCATCAAACATAAGT  880

seq1  TCTTTGTTCATATTCCTTGGCTATAGAACTTCAATTATGGAAGATCATAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCATATTCCTTGGCTATAGAACTTCAATTATGGAAGATCATAT  930

seq1  CCTGAATCTCCACTTAAGAGAGCAGATTTGTACTGACTGTCAACTAAGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTCCACTTAAGAGAGCAGATTTGTACTGACTGTCAACTAAGTG  980

seq1  AGATTTTGGAAAGTCCCCAATACATTTCAGTTCCCAAGGGAACATTAAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGAAAGTCCCCAATACATTTCAGTTCCCAAGGGAACATTAAAA  1030

seq1  TAAGCAGTATGGAGACTTGATAATTCTTTTAAAGTGGAAAGTACGTTCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTATGGAGACTTGATAATTCTTTTAAAGTGGAAAGTACGTTCTC  1080

seq1  TATACTAATGCCTGATTTTTTTTCTAAAAATCACTGGAGGCTAGAAGCTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAATGCCTGATTTTTTTTCTAAAAATCACTGGAGGCTAGAAGCTG  1130

seq1  AAGTTGGTAATTATGTAGAGAACAAAGATATTTTCTTATTTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTAATTATGTAGAGAACAAAGATATTTTCTTATTTGAATTC  1177