BAC Information

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BAC

Clone NameB6Ng01-246K17
Chromosome15 (Build37)
Map Location 30,541,391 - 30,732,438
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246K17.bB6Ng01-246K17.g
ACCGA055225GA055226
length1,1931,105
definitionB6Ng01-246K17.b B6Ng01-246K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,731,255 - 30,732,438)(30,541,391 - 30,542,500)
sequence
gaattcctctgggtaaatccaagagagtgattgttgaatcttatgaaaat
aagcagttttgtaaatgcagccaaacagccctggcaagcagctgtcccag
tgtgcacagcttcctgtcactccatgactacagagcatttaaagttctca
gggcttagattctcactactccataagtgcgcagtgcaatgacattgtat
ttcccgtcttttaagatttcctgcatgactcggatttatttgcagcaatg
caaatggctgaatcaaatcaatattgacatacagatgggatgatcataga
ttcatttgaatagactacatctctgaacctgatagaatcagaaaatgatt
tcaaagggtttttattcctcagccagataggcagccttaattcacttatc
acatagatctttgatatatgatatgtttggtcagtggtttctatgtcaat
atctcatatctatttctctgcttagttgggatctggtccatgaagaatta
aaagggtagaggcagatggccttggcccccagtgataaagtgtaaattag
ccaatgaaagcaaaactatgccctattatcctgaaatgtcctgttgggtt
gttgacagacaggatatactttgttcttttttttcccctttaacttttaa
gtaacccaggctggtcgtgaactcaagatctttatgctcctgaatgcgga
gcttatgggattaaatcagtgaagcaacagatgtctccagagaatctgaa
ttaacataggtccatgtacttacctgtgaatgataagaaggcatactaca
aaaagaccagactatgctgtagttacatgctagaatgccttttgaagaat
ttgagagattccatttgctctttctctccccgcagctacgtgaaactgtt
tgctttccttttcctaataggtaagtcaaatgagttatatttgtttttaa
atcatgtaccagagatggagcacagtgtgaggatatgctatcccagcatc
taaattgtgcttccttattaccttttctaaaaatgtgtttgttccataaa
catgacatcacagcaatgcttcaacagaagttggttcaagatcaatgaag
atattaaaacgtggttccaaccaaccgtacctccagtaactattctctgt
ctaggccacctgtttctccaagtcatccacctatcctcggctc
gaattctctcctccgctcctgctaatgctcagaaaggaagcattggagtt
catcaacatctgaccgaggtacagaggatgtcagagttgactgatcagcg
tagcagtgagcagcccagtagagctgacacagaaacagcacaatggttca
attaaatgctttggagagtactttacaatagtacccctagtgatcaaaga
ttgcgacttatgttattccaatttgtggaatgcccactggcagagatatt
atgatagtttattttctaatgtggttagatatatgtctccaactacaata
aatgccttctgtactagtaaaattgtttaaaaataattcctagcccatgc
atgagaaggttctcaagaatctgtgaaaggaaatatagtatgaggaattc
atattttatagaaccccatttgttgctccttccagtattggatattatac
ataatatgcctcttgtaatatagctacggtcaactctgaatctataaaat
taatttcaagaagagaaacttgaatgtgtttccttcccatggtaaaagct
tggcttttgtattgctagcacattttggatgatggagcctcaggctaatt
ctttgtgtttgtgacaaactggagtatttatttagagagaattaaaccca
aactgaatacatgctctttctgctttgtacagctctaagtggctgtttcc
cacatgggacagtactgtggtcctttgtgacacacacaggagccacttac
gtccaggcccccctgtgggagcattagtctttttgctgtatcaactgctt
gcatattttgccagtcatcaaagccaacaaaattaggttagggctgtgaa
cttcttctgcctcaaactgaaaagaaattcataatagaaatttgaggtag
atatatttttctcacacatgatttctgaaaacagaaaatgttccttggtg
ttagctatagcaagatgatggccaactccaggagagacttgttcttaaag
tggctgaatggacagacttaggttagaagcaagcatctttctttttcaag
aatatacttctttttagtcgtttatagttggtgaagaaaggcataattct
ttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30731255_30732438
seq2: B6Ng01-246K17.b_49_1241 (reverse)

seq1  GAGCCGA-GAT-GGTGGATGGCTTGAAGAAAACAGTGTTGCCTAGACAGA  48
      ||||||| ||| |||||||| |||| || |||||| || |||||||||||
seq2  GAGCCGAGGATAGGTGGATGACTTGGAG-AAACAG-GTGGCCTAGACAGA  48

seq1  GAATAATTACTG--AGTACG--TTGTTG--AACACGTTTT-ATATCTCAT  91
      ||||| ||||||   |||||  | ||||  | |||||||| ||||||   
seq2  GAATAGTTACTGGAGGTACGGTTGGTTGGAACCACGTTTTAATATCTTCA  98

seq1  TTGATCCTGAAACCAAC-TCTG-TGAAGCATTGCTGTGATGTCATGTTTA  139
      |||||| || ||||||| |||| |||||||||||||||||||||||||||
seq2  TTGATCTTG-AACCAACTTCTGTTGAAGCATTGCTGTGATGTCATGTTTA  147

seq1  TGG-ACAAACACATTTTTAG-AAAGGTATTAAGGAAGCACAATTTAGATG  187
      ||| |||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TGGAACAAACACATTTTTAGAAAAGGTAATAAGGAAGCACAATTTAGATG  197

seq1  CTGGGATAGCATAATCCTCACACTGTGCTCCATCTCTGGTACATGATTTA  237
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGGATAGCAT-ATCCTCACACTGTGCTCCATCTCTGGTACATGATTTA  246

seq1  AAAACAAATATAACTCATTTTGACTTACCTATTAGGAAAAGG-AAGCAAA  286
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  AAAACAAATATAACTCA-TTTGACTTACCTATTAGGAAAAGGAAAGCAAA  295

seq1  CAGTTTCACGTAGCTGCGGGGAGAGAAAGAGCAAATGGAATCTCTCAAAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCACGTAGCTGCGGGGAGAGAAAGAGCAAATGGAATCTCTCAAAT  345

seq1  TCTTCAAAAGGCATTCTAGCATGTAACTACAGCATAGTCTGGTCTTTTTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAGGCATTCTAGCATGTAACTACAGCATAGTCTGGTCTTTTTG  395

seq1  TAGTATGCCTTCTTATCATTCACAGGTAAGTACATGGACCTATGTTAATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGCCTTCTTATCATTCACAGGTAAGTACATGGACCTATGTTAATT  445

seq1  CAGATTCTCTGGAGACATCTGTTGCTTCACTGATTTAATCCCATAAGCTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTCTGGAGACATCTGTTGCTTCACTGATTTAATCCCATAAGCTC  495

seq1  CGCATTCAGGAGCATAAAGATCTTGAGTTCACGACCAGCCTGGGTTACTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCAGGAGCATAAAGATCTTGAGTTCACGACCAGCCTGGGTTACTT  545

seq1  AAAAGTTAAAGGGGAAAAAAAAGAACAAAGTATATCCTGTCTGTCAACAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAAGGGGAAAAAAAAGAACAAAGTATATCCTGTCTGTCAACAA  595

seq1  CCCAACAGGACATTTCAGGATAATAGGGCATAGTTTTGCTTTCATTGGCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGACATTTCAGGATAATAGGGCATAGTTTTGCTTTCATTGGCT  645

seq1  AATTTACACTTTATCACTGGGGGCCAAGGCCATCTGCCTCTACCCTTTTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACTTTATCACTGGGGGCCAAGGCCATCTGCCTCTACCCTTTTA  695

seq1  ATTCTTCATGGACCAGATCCCAACTAAGCAGAGAAATAGATATGAGATAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATGGACCAGATCCCAACTAAGCAGAGAAATAGATATGAGATAT  745

seq1  TGACATAGAAACCACTGACCAAACATATCATATATCAAAGATCTATGTGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGAAACCACTGACCAAACATATCATATATCAAAGATCTATGTGA  795

seq1  TAAGTGAATTAAGGCTGCCTATCTGGCTGAGGAATAAAAACCCTTTGAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAATTAAGGCTGCCTATCTGGCTGAGGAATAAAAACCCTTTGAAA  845

seq1  TCATTTTCTGATTCTATCAGGTTCAGAGATGTAGTCTATTCAAATGAATC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTGATTCTATCAGGTTCAGAGATGTAGTCTATTCAAATGAATC  895

seq1  TATGATCATCCCATCTGTATGTCAATATTGATTTGATTCAGCCATTTGCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCATCCCATCTGTATGTCAATATTGATTTGATTCAGCCATTTGCA  945

seq1  TTGCTGCAAATAAATCCGAGTCATGCAGGAAATCTTAAAAGACGGGAAAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCAAATAAATCCGAGTCATGCAGGAAATCTTAAAAGACGGGAAAT  995

seq1  ACAATGTCATTGCACTGCGCACTTATGGAGTAGTGAGAATCTAAGCCCTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCATTGCACTGCGCACTTATGGAGTAGTGAGAATCTAAGCCCTG  1045

seq1  AGAACTTTAAATGCTCTGTAGTCATGGAGTGACAGGAAGCTGTGCACACT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTAAATGCTCTGTAGTCATGGAGTGACAGGAAGCTGTGCACACT  1095

seq1  GGGACAGCTGCTTGCCAGGGCTGTTTGGCTGCATTTACAAAACTGCTTAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCTGCTTGCCAGGGCTGTTTGGCTGCATTTACAAAACTGCTTAT  1145

seq1  TTTCATAAGATTCAACAATCACTCTCTTGGATTTACCCAGAGGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAGATTCAACAATCACTCTCTTGGATTTACCCAGAGGAATTC  1193

seq1: chr15_30541391_30542500
seq2: B6Ng01-246K17.g_70_1174

seq1  GAATTCTCTCCTCCGCTCCTGCTAATGCTCAGAAAGGAAGCATTGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCCGCTCCTGCTAATGCTCAGAAAGGAAGCATTGGAGTT  50

seq1  CATCAACATCTGACCGAGGTACAGAGGATGTCAGAGTTGACTGATCAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATCTGACCGAGGTACAGAGGATGTCAGAGTTGACTGATCAGCG  100

seq1  TAGCAGTGAGCAGCCCAGTAGAGCTGACACAGAAACAGCACAATGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGAGCAGCCCAGTAGAGCTGACACAGAAACAGCACAATGGTTCA  150

seq1  ATTAAATGCTTTGGAGAGTACTTTACAATAGTACCCCTAGTGATCAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGCTTTGGAGAGTACTTTACAATAGTACCCCTAGTGATCAAAGA  200

seq1  TTGCGACTTATGTTATTCCAATTTGTGGAATGCCCACTGGCAGAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGACTTATGTTATTCCAATTTGTGGAATGCCCACTGGCAGAGATATT  250

seq1  ATGATAGTTTATTTTCTAATGTGGTTAGATATATGTCTCCAACTACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTTTATTTTCTAATGTGGTTAGATATATGTCTCCAACTACAATA  300

seq1  AATGCCTTCTGTACTAGTAAAATTGTTTAAAAATAATTCCTAGCCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCTGTACTAGTAAAATTGTTTAAAAATAATTCCTAGCCCATGC  350

seq1  ATGAGAAGGTTCTCAAGAATCTGTGAAAGGAAATATAGTATGAGGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGGTTCTCAAGAATCTGTGAAAGGAAATATAGTATGAGGAATTC  400

seq1  ATATTTTATAGAACCCCATTTGTTGCTCCTTCCAGTATTGGATATTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATAGAACCCCATTTGTTGCTCCTTCCAGTATTGGATATTATAC  450

seq1  ATAATATGCCTCTTGTAATATAGCTACGGTCAACTCTGAATCTATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGCCTCTTGTAATATAGCTACGGTCAACTCTGAATCTATAAAAT  500

seq1  TAATTTCAAGAAGAGAAACTTGAATGTGTTTCCTTCCCATGGTAAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAGAAGAGAAACTTGAATGTGTTTCCTTCCCATGGTAAAAGCT  550

seq1  TGGCTTTTGTATTGCTAGCACATTTTGGATGATGGAGCCTCAGGCTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTATTGCTAGCACATTTTGGATGATGGAGCCTCAGGCTAATT  600

seq1  CTTTGTGTTTGTGACAAACTGGAGTATTTATTTAGAGAGAATTAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTGTGACAAACTGGAGTATTTATTTAGAGAGAATTAAACCCA  650

seq1  AACTGAATACATGCTCTTTCTGCTTTGTACAGCTCTAAGTGGCTGTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATACATGCTCTTTCTGCTTTGTACAGCTCTAAGTGGCTGTTTCC  700

seq1  CACATGGGACAGTACTGTGGTCCTTTGTGACACACACAGGAGCCACTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGACAGTACTGTGGTCCTTTGTGACACACACAGGAGCCACTTAC  750

seq1  GTCCAGGCCCCCCTGTGGGAGCATTAGTC-TTTTGCTGTATCAACTGCTT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCAGGCCCCCCTGTGGGAGCATTAGTCTTTTTGCTGTATCAACTGCTT  800

seq1  GCATATTTTGCCAGTCATCAAAGCCAACAAAATTAGGTTAGGGCTGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTGCCAGTCATCAAAGCCAACAAAATTAGGTTAGGGCTGTGAA  850

seq1  CTTCTTCTGCCTCAAACTGAAAAGAAATTCATAATAGAAATTTGAGGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGCCTCAAACTGAAAAGAAATTCATAATAGAAATTTGAGGTAG  900

seq1  ATATA-TTTTCTCACACATGA-TTCTGAAAACAGAAAATGTTCC-TGGTG  946
      ||||| ||||||||||||||| |||||||||||||||||||||| |||||
seq2  ATATATTTTTCTCACACATGATTTCTGAAAACAGAAAATGTTCCTTGGTG  950

seq1  TTAGCTATAGCAAGAATGATGGCAAACTCCAGGAGAGACT--GTCTAAAA  994
      |||||||||||||| |||||||| ||||||||||||||||   ||| |||
seq2  TTAGCTATAGCAAG-ATGATGGCCAACTCCAGGAGAGACTTGTTCTTAAA  999

seq1  GGTGCTGAATGGACAGACTTAGGGTTTAGAAGCAAGCCATCTTTCTTTTT  1044
      |  ||||||||||||||||||||  ||||||||||| |||||||||||||
seq2  GTGGCTGAATGGACAGACTTAGG--TTAGAAGCAAG-CATCTTTCTTTTT  1046

seq1  CAAAGAATATACTCCTTTTTTAGTTCCTATTATAGTTTTGGTGAAAGAAA  1094
      | ||||||||||| | ||||||||  |  ||||||  ||||||||  || 
seq2  C-AAGAATATACTTC-TTTTTAGT--CGTTTATAG--TTGGTGAAGAAAG  1090

seq1  GCATAAATTCTTTAGA  1110
      |||| |||||||||||
seq2  GCAT-AATTCTTTAGA  1105