BAC Information

Click to search

BAC

Clone NameB6Ng01-247D17
Chromosome15 (Build37)
Map Location 103,031,162 - 103,187,055
singlet/doubletdoublet
Overlap geneCbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
Upstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
Downstream gene1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247D17.bB6Ng01-247D17.g
ACCGA055621GA055622
length1,1031,104
definitionB6Ng01-247D17.b B6Ng01-247D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,031,162 - 103,032,273)(103,185,960 - 103,187,055)
sequence
gaattctcaattttacactctttcttcgtagcaaaaatacaactgtaaag
tgaagcacaattcctctcaccatttcattaagaacattaagtcaccgcag
gaatctgttgctccgatgatcttttctggttccagtcctctctcaaagcc
ccgagcgatatcattgctttgctataaataggacaggagagattagagct
tgtagaaatcaaggaaaaaccaaaccaaaccaaacctgtttttcagaaca
acaaatcatcgcctttgttagtatcacctggtatcatttgtcttcagttc
agaaaaatccttacaactcaagaaatataataccgacctaggtcaatcag
agacagcaatgttaagagatacttttgcaataagatgtagtcatcttttc
tggtattccttgcaaatgattaagaagggacccccacgccgggcatggtg
gtgcacgcttttactcccagtactcggaaggcagaggcaggtggatttct
gagttcgaggccagcctgatctacaaagtgagttccaggacagccagggc
tatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaa
aaaaaggaagggacccccacaagtctttagcaccccaggagtctcaagag
aatcacctgggcactccatccctctaatccactcaatctcatcagcacta
cagacaccacacaagctcattttcactctctcaaacttcagatatgcttt
ctcaactatatgcttttagacttctaatttatcttaacagtgaccaacag
ttttaatatttcacaatcatctatactgtaaagcaggtaagaagaatgca
agacccatagtctaaaaagggcaaatttcaaagatcacaaacactagttc
gcatataacttgagagaggtctgctcagacaggctattaacattaactgg
gattgatctgagactgcaaacaactgaatggataactcaggagaatggat
gatccagtgtaatgcagggtcaaacaaaagtctaattttatacatatcac
atttttctaaattacaagagaataatgcaagctcatcatcagcacacaag
aaa
gaattcattttgtagaccaggctggccttgaactcagagatcctcttgcc
tctgcctctcaactgctgggattaaatgcatctgccaccactgcccagct
ttgatccatacttctaaaatcctactcagtctccccaaagcctctgtgac
ctccccctgcccatcaccctgctccccttccaggccagatcctgtccgcc
actcaagagcagatctcggagtcctattacccagagtatctcatcaaccc
tgttcaggggcagctgcagacccgccaggccagctccgtctatgatgaca
gctacttgggtaggcaagcaggtggggaggaaatgggaggggaaatcagg
ggcctctagcctcactcagttccctgcttctcccactcagtgccaccagc
tctgctgccatacttgtgtacaggctgacaatgaagggattgagggccag
agagtaggggtccccaaggaggcaatgctaacatccacacactctgtccc
caggatactctgtggctgtgggtgaattcagtggtgatgacacagaaggt
aagtcaatcttcaagccaaagtggggactgaaaagaaagccagaaacaac
attctgagtccaccctgtcctcacctccacccatcagtttctcttctctt
tgcagactttgttgctggcgtgcccaaggggaacctcacctatggctatg
taagaccctgcccgccacccgctgcctctcacccaggctaagtgcagagc
cttgtgtggtagtttgttgggtatatcaaggaaagagatcagagcatagg
ctctgggagaacacatcagatttctgaagtctgggttcaaagggaaggaa
gtgtgtgaagtcagactcaagttcaaattctggcactgactctggataat
gaatctgttcttttattgctacactgtcccctgcttgaccgctctaagct
gtttcttccatgtacaatgggggtaataatagttctgacctcaccaggca
cttggtgaggggattgcaagcactgttaatttgttagacggtggtgcaag
ccactcaagctatatagaccatggacagggtggccacactcggtcgctca
atta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103031162_103032273
seq2: B6Ng01-247D17.b_44_1146

seq1  GAATTCTCAATTTTACACTCTTTCTTCGTAGCAAAAATACAACTGTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTTTACACTCTTTCTTCGTAGCAAAAATACAACTGTAAAG  50

seq1  TGAAGCACAATTCCTCTCACCATTTCATTAAGAACATTAAGTCACCGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAATTCCTCTCACCATTTCATTAAGAACATTAAGTCACCGCAG  100

seq1  GAATCTGTTGCTCCGATGATCTTTTCTGGTTCCAGTCCTCTCTCAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTTGCTCCGATGATCTTTTCTGGTTCCAGTCCTCTCTCAAAGCC  150

seq1  CCGAGCGATATCATTGCTTTGCTATAAATAGGACAGGAGAGATTAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCGATATCATTGCTTTGCTATAAATAGGACAGGAGAGATTAGAGCT  200

seq1  TGTAGAAATCAAGGAAAAACCAAACCAAACCAAACCTGTTTTTCAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATCAAGGAAAAACCAAACCAAACCAAACCTGTTTTTCAGAACA  250

seq1  ACAAATCATCGCCTTTGTTAGTATCACCTGGTATCATTTGTCTTCAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCATCGCCTTTGTTAGTATCACCTGGTATCATTTGTCTTCAGTTC  300

seq1  AGAAAAATCCTTACAACTCAAGAAATATAATACCGACCTAGGTCAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCCTTACAACTCAAGAAATATAATACCGACCTAGGTCAATCAG  350

seq1  AGACAGCAATGTTAAGAGATACTTTTGCAATAAGATGTAGTCATCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAATGTTAAGAGATACTTTTGCAATAAGATGTAGTCATCTTTTC  400

seq1  TGGTATTCCTTGCAAATGATTAAGAAGGGACCCCCACGCCGGGCATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCCTTGCAAATGATTAAGAAGGGACCCCCACGCCGGGCATGGTG  450

seq1  GTGCACGCTTTTACTCCCAGTACTCGGAAGGCAGAGGCAGGTGGATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGCTTTTACTCCCAGTACTCGGAAGGCAGAGGCAGGTGGATTTCT  500

seq1  GAGTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGC  550

seq1  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  600

seq1  AAAAAGGAAGGGACCCCCACAAGTCTTTAGCACCCCAGGAGTCTCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAGGGACCCCCACAAGTCTTTAGCACCCCAGGAGTCTCAAGAG  650

seq1  AATCACCTGGGCACTCCATCCCTCTAATCCACTCAATCTCATCAGCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTGGGCACTCCATCCCTCTAATCCACTCAATCTCATCAGCACTA  700

seq1  CAGACACCACACAAGCTCATTTTCACTCTCTCAAACTTCAGATATGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCACACAAGCTCATTTTCACTCTCTCAAACTTCAGATATGCTTT  750

seq1  CTCAACTATATGCTTTTAGACTTCTAATTTATCTTAACAGTGACCAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTATATGCTTTTAGACTTCTAATTTATCTTAACAGTGACCAACAG  800

seq1  TTTTAATATTTCACAATCATCTATACTGTAAAGCAGGTAAGAAGAATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATTTCACAATCATCTATACTGTAAAGCAGGTAAGAAGAATGCA  850

seq1  AGACCCATAGTCTAAAAAGGGCAAATTTCAAAGATCACAAACACTAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATAGTCTAAAAAGGGCAAATTTCAAAGATCACAAACACTAGTTC  900

seq1  GCATATAACTTGAGAGAGGTCTGCTCAGACAGGCTATTAACATTAACTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAACTTGAGAGAGGTCTGCTCAGACAGGCTATTAACATTAACTGG  950

seq1  GATTGATCTGAGACTGCAAACAACTGAATGGATAACTCAGGAGAATGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATCTGAGACTGCAAACAACTGAATGGATAACTCAGGAGAATGGAT  1000

seq1  GATCCAGGTGTAATGCAGGGGTCAAAACAAAAAGTCTAATTTTATACATA  1050
      |||||| |||||||||| ||||||||   |||||||||||||||||||||
seq2  GATCCA-GTGTAATGCA-GGGTCAAA--CAAAAGTCTAATTTTATACATA  1046

seq1  TCACAATTTTTCTAAAATTTACAAGAG-ATAATGCAAGCTCATTCATCAG  1099
      |||| |||||||||||  ||||||||| |||||||||||||| |||||||
seq2  TCAC-ATTTTTCTAAA--TTACAAGAGAATAATGCAAGCTCA-TCATCAG  1092

seq1  CAACACAAAGAAA  1112
      | |||| ||||||
seq2  C-ACAC-AAGAAA  1103

seq1: chr15_103185960_103187055
seq2: B6Ng01-247D17.g_69_1172 (reverse)

seq1  TAATTGAGCGACCGAGTGTGGC--ACTTGT-CATGGTCTAATAATAGCT-  46
      ||||||||||||||||||||||   | ||| |||||||||   |||||| 
seq2  TAATTGAGCGACCGAGTGTGGCCACCCTGTCCATGGTCTA--TATAGCTT  48

seq1  -GGTGGC-TGCA-CACGGTCTAACAATTTACAAGTGCTTTCATTCCCCTC  93
        ||||| |||| ||| ||||||||| |||  ||||||| || |||||||
seq2  GAGTGGCTTGCACCACCGTCTAACAAATTAACAGTGCTTGCAATCCCCTC  98

seq1  A-CAAGTGCCTTGTGAGGTCAGAACTATTATTA-CCCCATTGTACATGGA  141
      | ||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ACCAAGTGCCTGGTGAGGTCAGAACTATTATTACCCCCATTGTACATGGA  148

seq1  AGAAACAGCTTAGAGCGGTCAAGCAGGGGACAGTGTAGCAATAAAAGAAC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTTAGAGCGGTCAAGCAGGGGACAGTGTAGCAATAAAAGAAC  198

seq1  AGATTCATTTATCCAGAGTCAGTGCCAGAATTTGAACTTGAGTCTGACTT  241
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCA-TTATCCAGAGTCAGTGCCAGAATTTGAACTTGAGTCTGACTT  247

seq1  CACACACTTCCTTCCC-TTGAA-CCAGACTTCAGAAATCTGATGTGTTCT  289
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CACACACTTCCTTCCCTTTGAACCCAGACTTCAGAAATCTGATGTGTTCT  297

seq1  CCCAGAGCCTATGCTCTGATCTCTTTCCTTGATATACCCAACAAACTACC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCCTATGCTCTGATCTCTTTCCTTGATATACCCAACAAACTACC  347

seq1  ACACAAGGCTCTGCACTTAGCCTGGGTGAGAGGCAGCGGGTGGCGGGCAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCTCTGCACTTAGCCTGGGTGAGAGGCAGCGGGTGGCGGGCAG  397

seq1  GGTCTTACATAGCCATAGGTGAGGTTCCCCTTGGGCACGCCAGCAACAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACATAGCCATAGGTGAGGTTCCCCTTGGGCACGCCAGCAACAAA  447

seq1  GTCTGCAAAGAGAAGAGAAACTGATGGGTGGAGGTGAGGACAGGGTGGAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAAAGAGAAGAGAAACTGATGGGTGGAGGTGAGGACAGGGTGGAC  497

seq1  TCAGAATGTTGTTTCTGGCTTTCTTTTCAGTCCCCACTTTGGCTTGAAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTTGTTTCTGGCTTTCTTTTCAGTCCCCACTTTGGCTTGAAGA  547

seq1  TTGACTTACCTTCTGTGTCATCACCACTGAATTCACCCACAGCCACAGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTACCTTCTGTGTCATCACCACTGAATTCACCCACAGCCACAGAG  597

seq1  TATCCTGGGGACAGAGTGTGTGGATGTTAGCATTGCCTCCTTGGGGACCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGGGACAGAGTGTGTGGATGTTAGCATTGCCTCCTTGGGGACCC  647

seq1  CTACTCTCTGGCCCTCAATCCCTTCATTGTCAGCCTGTACACAAGTATGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCTGGCCCTCAATCCCTTCATTGTCAGCCTGTACACAAGTATGG  697

seq1  CAGCAGAGCTGGTGGCACTGAGTGGGAGAAGCAGGGAACTGAGTGAGGCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGCTGGTGGCACTGAGTGGGAGAAGCAGGGAACTGAGTGAGGCT  747

seq1  AGAGGCCCCTGATTTCCCCTCCCATTTCCTCCCCACCTGCTTGCCTACCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCCTGATTTCCCCTCCCATTTCCTCCCCACCTGCTTGCCTACCC  797

seq1  AAGTAGCTGTCATCATAGACGGAGCTGGCCTGGCGGGTCTGCAGCTGCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGTCATCATAGACGGAGCTGGCCTGGCGGGTCTGCAGCTGCCC  847

seq1  CTGAACAGGGTTGATGAGATACTCTGGGTAATAGGACTCCGAGATCTGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGGTTGATGAGATACTCTGGGTAATAGGACTCCGAGATCTGCT  897

seq1  CTTGAGTGGCGGACAGGATCTGGCCTGGAAGGGGAGCAGGGTGATGGGCA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGGCGGACAGGATCTGGCCTGGAAGGGGAGCAGGGTGATGGGCA  947

seq1  GGGGGAGGTCACAGAGGCTTTGGGGAGACTGAGTAGGATTTTAGAAGTAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGTCACAGAGGCTTTGGGGAGACTGAGTAGGATTTTAGAAGTAT  997

seq1  GGATCAAAGCTGGGCAGTGGTGGCAGATGCATTTAATCCCAGCAGTTGAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAGCTGGGCAGTGGTGGCAGATGCATTTAATCCCAGCAGTTGAG  1047

seq1  AGGCAGAGGCAAGAGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAAAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAAGAGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAAAA  1097

seq1  TGAATTC  1096
      |||||||
seq2  TGAATTC  1104