BAC Information

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BAC

Clone NameB6Ng01-247M11
Chromosome3 (Build37)15 (Build37)
Map Location 128,915,652 - 128,916,61691,103,851 - 91,103,943
singlet/doubletsingletsinglet
Overlap genePitx2
Upstream geneEG668828, LOC100043393, EG668831
Downstream geneEnpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247M11.bB6Ng01-247M11.g
ACCGA056025GA056026
length97197
definitionB6Ng01-247M11.b B6Ng01-247M11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,915,652 - 128,916,616)(91,103,851 - 91,103,943)
sequence
gaattctgctcctgcccagccaaaggctattcggcttttggttaggacta
taaggtgggggagaggagacttggaatcagagggttagggtaaagaagca
agaaagtctaagactgagaggtataggtttagccagcaagcaccccctct
cttccttttgtgtctcactacatccatttctagaccagcccccccccccc
ccaacttccacaccccaggtcaggacagaaaggcgatgtgctacctaaag
ctaaagttaaaaacatcagcaaatcacctttctcatcttaattccgccct
ccctcccattcgcctgtcaggtgaatgtcgcgctaatctgaggaagcttt
actttaattgcaaagaagacagagtcttgaaaaggcaggctaataaatta
gaaatcgagaagaaaatggacccgtcaaaagaaaattaccttgactttag
tcgaacaactgcttggtggttcactctggatttatacatgaataaaataa
gtcgcctcacatcacgtcctctgtaatgcttattagtccccagacagaaa
actcacaatagagtagaaaccctaacccagcgttttcaaaatgccgaaag
cttatccattctacttaacgttgattaagacacaacctacgtctttcaaa
ttccttgcacactgtattaagctcgtcctagccagagagaagctacgctt
taaattcgactctcttgtttactttattatcaatcagattcaaatccagg
ctttagccggtagaatcaacaaccttgagctaattatatagaaaatatgc
cttaatgaattttccatacaattaagaacgttgccaaatgaccaatttca
agggatgattctttaacagtcattttcttttcctagggagctcaaaggct
gccttgaatcattaaagcacaagtaggcagaaacagtagatttgcactgg
gggtgggggggtgggggtggg
cagaacagtcagggctatacagagaaaccctgtctcaaaagaaccaaaga
aagaaagaaagagagagagagggagggagggagggagggagggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128915652_128916616
seq2: B6Ng01-247M11.b_44_1014 (reverse)

seq1  CCCACCC---CACCCCCACCCCCAGTGCAAATCTACTGTTTCTGCCTACT  47
      |||||||   | ||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCACCCCCCCACCCCCAGTGCAAATCTACTGTTTCTGCCTACT  50

seq1  TGTGCTTTAATGATTCAAGGCAGCC-TTGAGCTCCCTAGGAAAAGAAAAT  96
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTGCTTTAATGATTCAAGGCAGCCTTTGAGCTCCCTAGGAAAAGAAAAT  100

seq1  GACTGTTAAAGAATCAT-CCTTGAAATTGGTCATTTGGCAACGTTCTTAA  145
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACTGTTAAAGAATCATCCCTTGAAATTGGTCATTTGGCAACGTTCTTAA  150

seq1  TTGTATGG-AAATTCATTAAGGCATATTTTCTATATAATTAGCTCAAGGT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGAAAATTCATTAAGGCATATTTTCTATATAATTAGCTCAAGGT  200

seq1  TGTTGATTCTACCGGCTAAAGCCTGGATTTGAATCTGATTGATAATAAAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTCTACCGGCTAAAGCCTGGATTTGAATCTGATTGATAATAAAG  250

seq1  TAAACAAGAGAGTCGAATTTAAAGCGTAGCTTCTCTCTGGCTAGGACGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAGAGTCGAATTTAAAGCGTAGCTTCTCTCTGGCTAGGACGAG  300

seq1  CTTAATACAGTGTGCAAGGAATTTGAAAGACGTAGGTTGTGTCTTAATCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACAGTGTGCAAGGAATTTGAAAGACGTAGGTTGTGTCTTAATCA  350

seq1  ACGTTAAGTAGAATGGATAAGCTTTCGGCATTTTGAAAACGCTGGGTTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAAGTAGAATGGATAAGCTTTCGGCATTTTGAAAACGCTGGGTTAG  400

seq1  GGTTTCTACTCTATTGTGAGTTTTCTGTCTGGGGACTAATAAGCATTACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTACTCTATTGTGAGTTTTCTGTCTGGGGACTAATAAGCATTACA  450

seq1  GAGGACGTGATGTGAGGCGACTTATTTTATTCATGTATAAATCCAGAGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGTGATGTGAGGCGACTTATTTTATTCATGTATAAATCCAGAGTG  500

seq1  AACCACCAAGCAGTTGTTCGACTAAAGTCAAGGTAATTTTCTTTTGACGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAAGCAGTTGTTCGACTAAAGTCAAGGTAATTTTCTTTTGACGG  550

seq1  GTCCATTTTCTTCTCGATTTCTAATTTATTAGCCTGCCTTTTCAAGACTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTTCTTCTCGATTTCTAATTTATTAGCCTGCCTTTTCAAGACTC  600

seq1  TGTCTTCTTTGCAATTAAAGTAAAGCTTCCTCAGATTAGCGCGACATTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTGCAATTAAAGTAAAGCTTCCTCAGATTAGCGCGACATTCA  650

seq1  CCTGACAGGCGAATGGGAGGGAGGGCGGAATTAAGATGAGAAAGGTGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGGCGAATGGGAGGGAGGGCGGAATTAAGATGAGAAAGGTGATT  700

seq1  TGCTGATGTTTTTAACTTTAGCTTTAGGTAGCACATCGCCTTTCTGTCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTTTTTAACTTTAGCTTTAGGTAGCACATCGCCTTTCTGTCCT  750

seq1  GACCTGGGGTGTGGAAGTTGGGGGGGGGGGGGGCTGGTCTAGAAATGGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGGTGTGGAAGTTGGGGGGGGGGGGGGCTGGTCTAGAAATGGAT  800

seq1  GTAGTGAGACACAAAAGGAAGAGAGGGGGTGCTTGCTGGCTAAACCTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGACACAAAAGGAAGAGAGGGGGTGCTTGCTGGCTAAACCTATA  850

seq1  CCTCTCAGTCTTAGACTTTCTTGCTTCTTTACCCTAACCCTCTGATTCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTCTTAGACTTTCTTGCTTCTTTACCCTAACCCTCTGATTCCA  900

seq1  AGTCTCCTCTCCCCCACCTTATAGTCCTAACCAAAAGCCGAATAGCCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTCTCCCCCACCTTATAGTCCTAACCAAAAGCCGAATAGCCTTT  950

seq1  GGCTGGGCAGGAGCAGAATTC  965
      |||||||||||||||||||||
seq2  GGCTGGGCAGGAGCAGAATTC  971

seq1: chr15_91103851_91103943
seq2: B6Ng01-247M11.g_77_168 (reverse)

seq1  CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTTTCGT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||  
seq2  CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTTTCTTTCTTTC--  48

seq1  TTTTGTT-TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  93
      ||| ||| ||| ||||||||||||||||||||||||||| ||||
seq2  TTTGGTTCTTTTGAGACAGGGTTTCTCTGTATAGCCCTGACTGT  92